Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004664

Physical Location & Seq

Genomic Coordinates Forward (+)

925597 .. 927961

Gene Structure 2365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGCATCATTGTGGAATATGTTGAATAAAATCGATCCCAACTACTTCCCCAATGGCCCAGACTTTTTTATTCCATATGAAAATTTTATGGCGAAACCAAAGGTTCAGATTCTATATCACGACATTGACAAGGTGGATTCACAAGTTTCATCTAAATCGGACTTGAATCACAGGGCATTGCAGATTGAAAGGGCATGCAGAATGTCTCCTTTGAAGTTTTCTCTTGACAGGCCTGACTGCATTCTTAAATTGGTAATGTTAGAATGCTATGTTATCGTAAAAAATGAACCACTGACTAAATCAGGTTGTAAAGACAACAAAGTGCATCACTTCGAATTTGAATTTGTTTCATCTGTAAGTTGCCTACTATGTGCTTGTTACCGTTTATTTTTGTTTCAACCAATGTATTGTTACCGTTTGTTTCAAAGTGAATTGTTTCATTTGATATGCCAGCCTATTCCATATGAAGTTGGTGACGTACTTGAGGTTCTCCCCAGTCAAAATCCTGCTGCAGTGGATGCTTTCATACTTAGTTGTAATTTGGACCCTGAATCATTCATCACAAATCAGCTTCCTGATACTTGTATCCCCATCAAATTAAATACTTTTGTTGAATTGACAATGGATGTTGCATCAGCTTCTCCTCGATGCTATTTCTTCGAGGTCATGAGTATGTTTGCATCCGCTGAACATGAAAAAGAAAGACTTAAGTATTTTGTGTCACCAGAAGGAAGAGATGATCTGTACCAATACAATCAGAGGGAACAACGGACTGTTCTGGAGGCTTTAGGGGATTTCCCCTCTGTTCAATTGCCATTTGAATGGCTGATACGGTTGGTTCCTCCTTTGAAAAGGAGGGCTTTCTCCATCTCTTCGTCCCCTTCTGCCCACCTCAATCAAGTTCACTTAACAGTTAATTTAGTATCATGGACAACACTGTTCAAAACAATTCGAGCAGGTCTCTGTTCAAATTGGCTATCCAAGCTTGATCCTGAACAACTGTGGTTTCAGAAAGGTTCCCTTCCTCCCCCACGACCATCACTTCCTCTCATTCTCATTGGACCTGGAACTGGCTGTGTGCCTTTTCGTGGATTTGTGGAGGAAAGAGCTATACAAAGCTTGACCGAATCAACTGGTCCAGTGATATTCTTCTTTGGATGCAGAAACGAGGACAAAGATTTTTGGTTATCCAATTCACAAGATGGTGGGGTACTTTCAGAAGCAAAGGGCGGGGGCTTTTTGTTGCCTTCCAAGAGACCAGTCACAGAAGTCTATGTGCAGGATAAGATGCGGGAACACAGCCAGAAGTTGTGGAAATTGCTGATGGAGGGGGTTGCTATTTACATTGCAGGTTCTTCTACAAAAATGCCAGCAGATGTATTATTAGCCTTTGAGGAGATTATTTACAAAGAAAGTGAGCTTCCACAGGAATCGGCAGTGAGATGGGTTAGAGAATTGGAAAAGGCTGGCAGATACTATGTTGAAGCATGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016491 GO:0016651 GO:0022414 GO:0032501 GO:0032502 GO:0035690 GO:0036245 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071310 GO:1901654 GO:1901655 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

499

Amino Acids

57.02

Weight (kDa)

5.73

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02280 AT3G02280 AT3G02280
fragaria_vesca	FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220
malus_domestica	MD09G1086400.v1.1 MD09G1086700.v1.1 MD09G1087200.v1.1 MD12G1122800.v1.1
prunus_persica	Prupe.3G238300_v2.0.a1 Prupe.3G238300_v2.0.a1
pyrus_communis	pycom09g01200 pycom09g01250 pycom09g01260 pycom12g12160
rosa_chinensis	RchiOBHm_Chr2g0162931
rosa_laevigata	RLG00000021362
rosa_multiflora	Rmu_sc0006129.1_g000002 Rmu_sc0036821.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087700
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565400 Rh2BG578100 Rh2CG547800 Rh2DG588300
rosa_wichuraiana	Rw2G046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	947, 1340
AciI	CCGC	3 cut(s)	684, 1230, 1291
AclWI	GGATC	2 cut(s)	29, 983
AcsI	RAATTY	3 cut(s)	82, 335, 341
AfaI	GTAC	3 cut(s)	480, 746, 1212
AfiI	CCNNNNNNNGG	2 cut(s)	1070, 1088
AflII	CTTAAG	1 cut(s)	707
AjnI	CCWGG	1 cut(s)	1063
AluBI	AGCT	6 cut(s)	571, 638, 985, 1109, 1119, 1420
AluI	AGCT	6 cut(s)	571, 638, 985, 1109, 1119, 1420
Alw26I	GTCTC	3 cut(s)	210, 965, 1249
AlwI	GGATC	2 cut(s)	29, 983
AoxI	GGCC	2 cut(s)	55, 230
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	3 cut(s)	82, 335, 341
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	4 cut(s)	56, 544, 1061, 1136
AsuHPI	GGTGA	2 cut(s)	485, 714
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	3 cut(s)	544, 1061, 1136
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	6 cut(s)	599, 875, 1045, 1196, 1318, 1437
BciT130I	CCWGG	1 cut(s)	1065
BciVI	GTATCC	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	210, 965, 1249
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	707
BfuAI	ACCTGC	2 cut(s)	947, 1340
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	1065
Bme18I	GGWCC	3 cut(s)	544, 1061, 1136
BmgT120I	GGNCC	4 cut(s)	56, 544, 1061, 1136
BmiI	GGNNCC	3 cut(s)	546, 840, 1018
BmrFI	CCNGG	1 cut(s)	1065
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	8 cut(s)	14, 334, 508, 638, 641, 689, 1148, 1278
BmuI	ACTGGG	1 cut(s)	489
BplI	GAGNNNNNCTC	2 cut(s)	945, 977
BpmI	CTGGAG	1 cut(s)	800
Bpu14I	TTCGAA	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	33
BsaI	GGTCTC	2 cut(s)	965, 1249
Bsc4I	CCNNNNNNNGG	2 cut(s)	1070, 1088
Bse1I	ACTGG	5 cut(s)	495, 1075, 1138, 1139, 1259
Bse3DI	GCAATG	2 cut(s)	176, 1344
BseBI	CCWGG	1 cut(s)	1065
BseCI	ATCGAT	1 cut(s)	33
BseGI	GGATG	4 cut(s)	523, 631, 680, 1163
BseLI	CCNNNNNNNGG	2 cut(s)	1070, 1088
BseMI	GCAATG	2 cut(s)	176, 1344
BseNI	ACTGG	5 cut(s)	495, 1075, 1138, 1139, 1259
BseRI	GAGGAG	2 cut(s)	633, 1409
BseXI	GCAGC	1 cut(s)	496
BsgI	GTGCAG	1 cut(s)	1298
BshFI	GGCC	2 cut(s)	57, 232
BshVI	ATCGAT	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	2 cut(s)	1070, 1088
BsmAI	GTCTC	3 cut(s)	210, 965, 1249
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	2 cut(s)	240, 269
BsnI	GGCC	2 cut(s)	57, 232
Bso31I	GGTCTC	2 cut(s)	965, 1249
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	34, 739, 988
BspACI	CCGC	3 cut(s)	684, 1230, 1291
BspANI	GGCC	2 cut(s)	57, 232
BspDI	ATCGAT	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	3 cut(s)	546, 840, 1018
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	2 cut(s)	947, 1340
BspPI	GGATC	2 cut(s)	29, 983
BspT104I	TTCGAA	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	707
BspTNI	GGTCTC	2 cut(s)	965, 1249
BsrDI	GCAATG	2 cut(s)	176, 1344
BsrI	ACTGG	5 cut(s)	495, 1075, 1138, 1139, 1259
BssMI	GATC	3 cut(s)	34, 739, 988
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	7 cut(s)	383, 416, 775, 834, 913, 939, 1002
Bst6I	CTCTTC	2 cut(s)	727, 877
BstAFI	CTTAAG	1 cut(s)	707
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	196, 452, 1371, 1468
BstDEI	CTNAG	1 cut(s)	530
BstF5I	GGATG	4 cut(s)	523, 631, 680, 1163
BstKTI	GATC	3 cut(s)	37, 742, 991
BstMAI	GTCTC	3 cut(s)	210, 965, 1249
BstMBI	GATC	3 cut(s)	34, 739, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 982
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	1063
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	822
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	2 cut(s)	57, 232
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	4 cut(s)	523, 631, 680, 1163
BtsI	GCAGTG	2 cut(s)	519, 1443
BtsIMutI	CAGTG	5 cut(s)	290, 519, 935, 1146, 1443
BveI	ACCTGC	2 cut(s)	947, 1340
Cac8I	GCNNGC	4 cut(s)	196, 452, 1371, 1468
CciI	TCATGA	1 cut(s)	666
Cfr13I	GGNCC	4 cut(s)	56, 544, 1061, 1136
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	479, 745, 1211
CviAII	CATG	5 cut(s)	195, 667, 692, 927, 1488
CviQI	GTAC	3 cut(s)	479, 745, 1211
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	3 cut(s)	36, 741, 990
DpnII	GATC	3 cut(s)	34, 739, 988
Eam1104I	CTCTTC	2 cut(s)	727, 877
EarI	CTCTTC	2 cut(s)	727, 877
Eco147I	AGGCCT	1 cut(s)	232
Eco31I	GGTCTC	2 cut(s)	965, 1249
Eco47I	GGWCC	3 cut(s)	544, 1061, 1136
EcoRII	CCWGG	1 cut(s)	1063
FaeI	CATG	5 cut(s)	198, 670, 695, 930, 1491
FalI	AAGNNNNNCTT	6 cut(s)	690, 722, 844, 876, 1005, 1037
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	5 cut(s)	194, 666, 691, 926, 1487
FauI	CCCGC	2 cut(s)	1223, 1284
FauNDI	CATATG	2 cut(s)	76, 463
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	4 cut(s)	530, 638, 667, 1170
Fsp4HI	GCNGC	1 cut(s)	510
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	800
HaeIII	GGCC	2 cut(s)	57, 232
Hin1II	CATG	5 cut(s)	198, 670, 695, 930, 1491
HindIII	AAGCTT	2 cut(s)	983, 1117
HinfI	GANTC	6 cut(s)	109, 137, 166, 551, 1127, 1430
HphI	GGTGA	2 cut(s)	485, 714
Hpy166II	GTNNAC	1 cut(s)	904
Hpy188I	TCNGA	5 cut(s)	108, 160, 759, 1011, 1219
Hpy188III	TCNNGA	6 cut(s)	119, 224, 575, 667, 779, 992
Hpy8I	GTNNAC	1 cut(s)	904
HpyAV	CCTTC	4 cut(s)	722, 891, 1031, 1257
HpyCH4III	ACNGT	7 cut(s)	383, 416, 775, 834, 913, 939, 1002
HpyCH4IV	ACGT	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 982
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	198, 670, 695, 930, 1491
Kzo9I	GATC	3 cut(s)	34, 739, 988
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	8 cut(s)	14, 334, 508, 638, 641, 689, 1148, 1278
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	5 cut(s)	377, 410, 473, 720, 1261
MalI	GATC	3 cut(s)	36, 741, 990
MboI	GATC	3 cut(s)	34, 739, 988
MboII	GAAGA	5 cut(s)	649, 744, 864, 1141, 1347
MfeI	CAATTG	1 cut(s)	809
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	5 cut(s)	246, 599, 708, 908, 915
MslI	CAYNNNNRTG	3 cut(s)	10, 671, 820
MspA1I	CMGCKG	1 cut(s)	686
MspCI	CTTAAG	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	1065
MunI	CAATTG	1 cut(s)	809
Mva1269I	GAATGC	2 cut(s)	240, 269
MvaI	CCWGG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	2 cut(s)	518, 982
NdeI	CATATG	2 cut(s)	76, 463
NdeII	GATC	3 cut(s)	34, 739, 988
NlaIII	CATG	5 cut(s)	198, 670, 695, 930, 1491
NlaIV	GGNNCC	3 cut(s)	546, 840, 1018
NmuCI	GTSAC	3 cut(s)	473, 720, 1261
NspI	RCATGY	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	198
PagI	TCATGA	1 cut(s)	666
PceI	AGGCCT	1 cut(s)	232
PctI	GAATGC	2 cut(s)	240, 269
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	6 cut(s)	109, 137, 166, 551, 1127, 1430
PkrI	GCNGC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	1063
PspGI	CCWGG	1 cut(s)	1063
PspN4I	GGNNCC	3 cut(s)	546, 840, 1018
PspPI	GGNCC	4 cut(s)	56, 544, 1061, 1136
PsrI	GAACNNNNNNTAC	2 cut(s)	471, 503
PstI	CTGCAG	1 cut(s)	514
RsaI	GTAC	3 cut(s)	480, 746, 1212
RsaNI	GTAC	3 cut(s)	479, 745, 1211
RseI	CAYNNNNRTG	3 cut(s)	10, 671, 820
SaqAI	TTAA	5 cut(s)	246, 599, 708, 908, 915
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	3 cut(s)	34, 739, 988
Sau96I	GGNCC	4 cut(s)	56, 544, 1061, 1136
ScrFI	CCNGG	1 cut(s)	1065
SfaNI	GCATC	8 cut(s)	14, 334, 508, 638, 641, 689, 1148, 1278
SfcI	CTRYAG	1 cut(s)	510
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	3 cut(s)	544, 1061, 1136
SmiMI	CAYNNNNRTG	3 cut(s)	10, 671, 820
SmlI	CTYRAG	2 cut(s)	482, 707
SmoI	CTYRAG	2 cut(s)	482, 707
SphI	GCATGC	1 cut(s)	198
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	3 cut(s)	684, 1230, 1291
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	1063
TaaI	ACNGT	7 cut(s)	383, 416, 775, 834, 913, 939, 1002
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	5 cut(s)	33, 333, 646, 660, 952
TaqII	GACCGA	1 cut(s)	1139
TfiI	GAWTC	6 cut(s)	109, 137, 166, 551, 1127, 1430
Tru1I	TTAA	5 cut(s)	246, 599, 708, 908, 915
Tru9I	TTAA	5 cut(s)	246, 599, 708, 908, 915
TscAI	CASTG	5 cut(s)	297, 519, 942, 1146, 1443
TseFI	GTSAC	3 cut(s)	473, 720, 1261
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	3 cut(s)	473, 720, 1261
TspDTI	ATGAA	9 cut(s)	93, 138, 300, 339, 428, 480, 514, 547, 708
TspGWI	ACGGA	1 cut(s)	784
TspRI	CASTG	5 cut(s)	297, 519, 942, 1146, 1443
Vha464I	CTTAAG	1 cut(s)	707
VpaK11BI	GGWCC	3 cut(s)	544, 1061, 1136
XapI	RAATTY	3 cut(s)	82, 335, 341
XceI	RCATGY	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.