Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036821.1

Orthogroup ID

OG0004664

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 713

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036821.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 622 bp

aacagtgagtgtagtattatggacaacacctttcaaaagaaatcgagcaggtctttgctcaagttggctagccaagcttgatcctgaacaacgtgttcatgttccagtgtggttccagaaaggctcccttcgtcccccaccaccatcacttcctcttattctcgttggacctggaactggatgtgcgccctttcgtggattcattgaggaaagagccatacaaagtttgactggttcaactgctccagtcatgttcttttttggatgcagaaatgaagacaacgatttcttatacaaagagttttggttatctcatttgcaaaacaacggggtactttcagaagcgaagggtggaggcttttatgttgccttctcaagagaccagccacagaaagtctatgtgcagcataagatgctggaacatagccacagggtgtggaatttgcttagtgagggggctgcaatctatgtagctggttcttcgacaaaaatgccctcagatgtattattagcgtttgaggaaattatctccaaagaaagtgggcttcctcaggaatctgcagtcagatggcttagggctctggaaaaggctggcaaataccatgttgaagcatggagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016491 GO:0016651 GO:0022414 GO:0032501 GO:0032502 GO:0035690 GO:0036245 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071310 GO:1901654 GO:1901655 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

206

Amino Acids

23.09

Weight (kDa)

8.77

Isoelectric Point (pI)

60.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02280 AT3G02280 AT3G02280
fragaria_vesca	FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220 FvH4_6g45220
malus_domestica	MD09G1086400.v1.1 MD09G1086700.v1.1 MD09G1087200.v1.1 MD12G1122800.v1.1
prunus_persica	Prupe.3G238300_v2.0.a1 Prupe.3G238300_v2.0.a1
pyrus_communis	pycom09g01200 pycom09g01250 pycom09g01260 pycom12g12160
rosa_chinensis	RchiOBHm_Chr2g0162931
rosa_laevigata	RLG00000021362
rosa_multiflora	Rmu_sc0006129.1_g000002 Rmu_sc0036821.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087700
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565400 Rh2BG578100 Rh2CG547800 Rh2DG588300
rosa_wichuraiana	Rw2G046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	177, 195
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	35, 238, 609
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	77, 474
AluI	AGCT	2 cut(s)	77, 474
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	404, 459
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	168
AsuNHI	GCTAGC	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	416, 446
BccI	CCATC	2 cut(s)	152, 562
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	2 cut(s)	405, 460
BlsI	GCNGC	2 cut(s)	406, 461
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	114, 125
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	255, 403
BmtI	GCTAGC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	2 cut(s)	44, 359
BsaI	GGTCTC	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 195
Bse1I	ACTGG	4 cut(s)	105, 182, 236, 246
Bse21I	CCTNAGG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	186, 270
BseLI	CCNNNNNNNGG	2 cut(s)	177, 195
BseMII	CTCAG	2 cut(s)	511, 564
BseNI	ACTGG	4 cut(s)	105, 182, 236, 246
BseXI	GCAGC	2 cut(s)	416, 446
BsgI	GTGCAG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	177, 195
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	118
Bso31I	GGTCTC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp143I	GATC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	510, 563
BspLI	GGNNCC	2 cut(s)	114, 125
BspMAI	CTGCAG	1 cut(s)	563
BspMI	ACCTGC	1 cut(s)	39
BspOI	GCTAGC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	373
BsrI	ACTGG	4 cut(s)	105, 182, 236, 246
BssMI	GATC	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	70, 593
BstDEI	CTNAG	4 cut(s)	447, 497, 550, 573
BstF5I	GGATG	2 cut(s)	186, 270
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	83
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 413
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	416, 446
BstV2I	GAAGAC	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	186, 270
BtsIMutI	CAGTG	2 cut(s)	10, 112
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	70, 593
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	333
CspCI	CAANNNNNGTGG	2 cut(s)	521, 556
CviAII	CATG	4 cut(s)	99, 251, 603, 613
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	4 cut(s)	447, 497, 550, 573
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
DraIII	CACNNNGTG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	581
Eco31I	GGTCTC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	581
FaeI	CATG	4 cut(s)	102, 254, 606, 616
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	4 cut(s)	98, 250, 602, 612
Fnu4HI	GCNGC	2 cut(s)	405, 460
FokI	GGATG	2 cut(s)	193, 277
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	405, 460
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	405, 460
GsuI	CTGGAG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	102, 254, 606, 616
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	199, 555
Hpy188I	TCNGA	3 cut(s)	341, 500, 567
Hpy188III	TCNNGA	5 cut(s)	84, 116, 376, 552, 582
HpyAV	CCTTC	3 cut(s)	138, 341, 380
HpyCH4III	ACNGT	1 cut(s)	5
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	268, 320, 404, 462, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 413
HpyF3I	CTNAG	4 cut(s)	447, 497, 550, 573
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	4 cut(s)	102, 254, 606, 616
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	129, 248
Lsp1109I	GCAGC	2 cut(s)	416, 446
LweI	GCATC	2 cut(s)	255, 403
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	92
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	2 cut(s)	288, 472
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	2 cut(s)	440, 523
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	163, 200, 348, 446, 506, 512, 559
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	74, 413
NdeII	GATC	1 cut(s)	80
NheI	GCTAGC	1 cut(s)	68
NlaIII	CATG	4 cut(s)	102, 254, 606, 616
NlaIV	GGNNCC	2 cut(s)	114, 125
PfeI	GAWTC	2 cut(s)	199, 555
PkrI	GCNGC	2 cut(s)	406, 461
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	114, 125
PspPI	GGNCC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SatI	GCNGC	2 cut(s)	405, 460
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	581
SetI	ASST	6 cut(s)	32, 53, 79, 95, 173, 476
SfaNI	GCATC	2 cut(s)	255, 403
SfcI	CTRYAG	1 cut(s)	559
SinI	GGWCC	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	59, 374
SmoI	CTYRAG	2 cut(s)	59, 374
Sse9I	AATT	2 cut(s)	440, 523
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	5
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	44, 483
TasI	AATT	2 cut(s)	440, 523
TfiI	GAWTC	2 cut(s)	199, 555
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	2 cut(s)	404, 459
TspDTI	ATGAA	3 cut(s)	87, 191, 289
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	440
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.