Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Forward (+)

35168027 .. 35175462

Gene Structure 7436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45980.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGCTGAACAATCCAAGCCTCACGCTTCCCGCTCCCGCCAAACTCCCTCCTCCTCCTCCTCCTCCGCTAACCTCCGATCATCTCCACCGCCGTCTCATCTCCCAAATCAATGTCGGCCACCTCCCCAAAGCAATCTCCACCCTCGACCTCATGGCCCGCCGCGGCTCCCACCCCGACCTCCCCACCTACTCCCTCCTCCTCAAATCCTGCCTCCGCTCCCGCCGCTTCCACCTCGCCAAGCTCGTCCACGCCCACCTCTCCCGCTCCCACCTCCGCCCCGACTCCCTCATCCTCAACTCCCTCATCAGCGTCTACTCCAAATCCGGCGACTTCGAAACCGCCCGGTCCATCTTCCAAACGATGGGACCAAAGAGAAACCTAGTGTCGTGGAGCGCGATGGTCTCGTGCTTCGCGAACAACGACATCCCATTGGAGGCCATCTCTATGTTTGTTGATATGATTGAGGAGGGTTATAATGCTAACGAGTTTTGCTACGCGTCGGTTATAAGAGCGTGTTCGAATCCGGAGCTTGTTGGGATTGGTAGGGTCGTTTTCGGGATGGTGGTTAAGACCGGGTATCTTGAGTCGGATGTGTGCATTGGGTCTTCGTTGATTGATATGTTTGCGAAGGGAAGTGGGGAATTAGGGGATGCATATAAGGTGTTTGAGAAAATGGCTGAGACGGATGCGGTGACTTGGAGCTTGATGATCACTAGGTTTGTGCAGATGGGTTATCCGAGAAAGGCGGTTGAGTTGTTTATGGAGATGTTGTCGAATGGGCTAATGCCGGACCAGTTTACTTTGAGTGGTGTTGTGTCGGCTTGTACAAAGTTGGGGTCGTTGGCATTGGGAAAGCAGCTGCATTCGTGGGCTGAACGGTCGCGGTTGGTATTGGATCATTGTGTTGGGTGTTGTTTGGTGGATATGTATGCTAAGTGTGGAGGTGATGGGTCTATGAGTGATTCAAGGAAGGTGTTTGATCGGATGCGAGAGCATAGTGTTGTGTCGTGGACTGCTGTTATCACTGGATATGTGCAGAGTGGAGGGGGCGATGAGGAAGCTGTCGAGCTCTTTGTTAAAATGATCTCGGGTGGTCATGTTTCACCTAATCATTTCACGTTTGCTAGCATCCTGAAGGCTTGTGCAAACCTTTCTGATCGGCATAAGGGAGGTCAAGTTCACTCCCTTGCAGTGAAACTTGGCCTTGCATCAGTTAATTGTGTGGGAAATTCGCTTATTAGCATGTATGCAAGGTCTGGCCATGTGGACGATGCTCGTAAAGCTTTTGATGTTCTGTATGAGAAGAATTTGATATCTTATAATGCAATCGTTGATGCATATGCCAAGCATCTTGACACTGAAGGAGCCTTTGGACTTCTCCATGAAATTGAGAATACAGGACTAGGGGCTAGTGCTTTCACATTTGCTAGTCTTTTGAGTGGAGCAGCCAGCCTTTGTGCAGTTGATAAGGGCGAACAGATACATTCCCGGATTATAAAATCAGGATTTGAGTCAAATCAAAGCATTTGCAATGCCTTGGTTTCTATGTATTCCAGGTGTGGAAACATAAACGCTGCTTTTCAAGTGTTTAATAAGATGGAGGATTGGAATGTTATATCATGGACTTCAATGATCACAGGATTTGCAAAACATGGTTATGCGGCTAGAGCTGTGGGACTATTTGACCAAATGCTTGAGGCCGGGTTAAAACCGAATGAGATCACATATATTGCTGTCTTATCAGCATGTAGCCATGCAGGTTTGATTTCTGAGGGGTGGAAACACTTCAAGGAAATGCACCAACAACATGGTATTGTCCCAAGAATGGAACACTATGCATGTATGGTTGATTTATTGGGCCGCTCAGGATCCCTTGTAGAAGCCATTGAATTTATTAACTCAATGCCTTTTGAAGCTGATGCACTAATATGGCGAACATTTCTTGGAGCATGCCGAGTGCATTGTGACGTTGAGCTTGGGAAACATGCAGCAAAGATGATTATGAAGCAGAACCCACATGATTCAGCAGCATATAGCTTACTATCAAATTTGTATGCTTCCACTGGTCAGTGGGAAGAAGTAGCAAATATAAGAAAACAAATGAAAGAGAAAGCTTTGGTCAAAGAAGCAGGTTCTAGCTGGATAGAGGTGAAAAATAAGATGCACAAGTTCCATGTTGGAGATACTTCACACCCAAAAGCACAGGAGATTTATGATGAAATGGACCGATTGGGTTCAAAGATAAAGAAATTGGGTTATGTCCCCGATACAGATTATGTACTTCATGAGGTGGATGAGGAGCAAAAGGAATATTATTTGTTTCAGCACAGTGAGAAATTAGCAGTGACATTTGGTCTTATAAGCACATCAAAATCAAAACCCATAAGAGTATTCAAGAATCTCCGTGTTTGTGGAGATTGTCACACTGCAATCAAGTATATTTCAAAAGCCACGGGAAGAGAAATAGTGGTAAGGGATTCAAATCGGTTTCATCAGTTTATGGATGGGACATGTTCTTGCAATGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

845

Amino Acids

93.37

Weight (kDa)

7.38

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	229 - 276	5.6e-09	PPR repeat family
PPR	PF01535	231 - 261	2.5e-06	PPR repeat
PPR_2	PF13041	333 - 383	2.9e-07	PPR repeat family
PPR_2	PF13041	436 - 482	8.3e-06	PPR repeat family
PPR_2	PF13041	537 - 584	3.3e-11	PPR repeat family
PPR	PF01535	539 - 569	1.7e-06	PPR repeat
E_motif	PF20431	654 - 716	7.8e-17	E motif
Eplus_motif	PF20430	722 - 744	1.5e-06	E+ motif
DYW_deaminase	PF14432	752 - 844	2.9e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	5 cut(s)	474, 506, 1320, 1496, 2360
Acc36I	ACCTGC	2 cut(s)	1748, 2120
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccBSI	CCGCTC	4 cut(s)	32, 216, 264, 1863
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	5 cut(s)	162, 395, 413, 497, 883
AccIII	TCCGGA	1 cut(s)	523
AclWI	GGATC	3 cut(s)	903, 1863, 1876
AcoI	YGGCCR	2 cut(s)	115, 1258
AcsI	RAATTY	4 cut(s)	1228, 1306, 1889, 2047
AcuI	CTGAAG	2 cut(s)	1154, 1380
AfaI	GTAC	2 cut(s)	826, 2280
AfiI	CCNNNNNNNGG	3 cut(s)	361, 433, 1825
AflIII	ACRYGT	2 cut(s)	495, 2510
AhdI	GACNNNNNGTC	1 cut(s)	2352
AjnI	CCWGG	1 cut(s)	1553
AjuI	GAANNNNNNNTTGG	2 cut(s)	1353, 1385
AloI	GAACNNNNNNTCC	2 cut(s)	1161, 1193
Alw21I	GWGCWC	1 cut(s)	1071
Alw26I	GTCTC	3 cut(s)	98, 406, 674
AlwI	GGATC	3 cut(s)	903, 1863, 1876
Ama87I	CYCGRG	1 cut(s)	1087
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	7 cut(s)	115, 153, 435, 1201, 1258, 1698, 1858
ApeKI	GCWGC	6 cut(s)	856, 859, 1445, 1574, 1988, 2027
ApoI	RAATTY	4 cut(s)	1228, 1306, 1889, 2047
ArsI	GACNNNNNNTTYG	2 cut(s)	821, 853
Asp700I	GAANNNNTTC	1 cut(s)	1784
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	6 cut(s)	154, 345, 365, 790, 1858, 2224
AsuC2I	CCSGG	4 cut(s)	343, 574, 1489, 1702
AsuHPI	GGTGA	4 cut(s)	703, 956, 1095, 2161
AsuII	TTCGAA	2 cut(s)	333, 518
AsuNHI	GCTAGC	1 cut(s)	1124
AvaI	CYCGRG	1 cut(s)	1087
AvaII	GGWCC	4 cut(s)	345, 365, 790, 2224
BalI	TGGCCA	1 cut(s)	1260
BamHI	GGATCC	1 cut(s)	1868
BanII	GRGCYC	1 cut(s)	1071
BauI	CACGAG	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	1071
BbvI	GCAGC	6 cut(s)	846, 868, 1457, 1561, 2000, 2039
BccI	CCATC	9 cut(s)	355, 356, 391, 446, 553, 721, 941, 1591, 2498
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	1555
BclI	TGATCA	2 cut(s)	708, 1632
BcnI	CCSGG	4 cut(s)	343, 574, 1489, 1702
BcoDI	GTCTC	3 cut(s)	98, 406, 674
BfaI	CTAG	8 cut(s)	380, 714, 1125, 1403, 1410, 1428, 1665, 2136
BfuAI	ACCTGC	2 cut(s)	1748, 2120
Bme1390I	CCNGG	5 cut(s)	343, 574, 1489, 1555, 1702
Bme18I	GGWCC	4 cut(s)	345, 365, 790, 2224
BmeRI	GACNNNNNGTC	1 cut(s)	2352
BmeT110I	CYCGRG	1 cut(s)	1087
BmgT120I	GGNCC	6 cut(s)	154, 345, 365, 790, 1858, 2224
BmiI	GGNNCC	4 cut(s)	166, 366, 1366, 1870
BmrFI	CCNGG	5 cut(s)	343, 574, 1489, 1555, 1702
BmtI	GCTAGC	1 cut(s)	1128
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
Bpu10I	CCTNAGC	1 cut(s)	1864
Bpu14I	TTCGAA	2 cut(s)	333, 518
BpuEI	CTTGAG	2 cut(s)	602, 1715
BpuMI	CCSGG	4 cut(s)	343, 574, 1489, 1702
BsaBI	GATNNNNATC	1 cut(s)	2481
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	3 cut(s)	160, 1536, 2451
BsaWI	WCCGGW	1 cut(s)	523
BsaXI	ACNNNNNCTCC	4 cut(s)	755, 785, 1161, 1191
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 433, 1825
Bse1I	ACTGG	4 cut(s)	793, 1030, 2068, 2534
Bse3DI	GCAATG	2 cut(s)	1537, 2527
Bse8I	GATNNNNATC	1 cut(s)	2481
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	1555
BseDI	CCNNGG	3 cut(s)	160, 1536, 2451
BseJI	GATNNNNATC	1 cut(s)	2481
BseLI	CCNNNNNNNGG	3 cut(s)	361, 433, 1825
BseMI	GCAATG	2 cut(s)	1537, 2527
BseMII	CTCAG	3 cut(s)	669, 1761, 1878
BseNI	ACTGG	4 cut(s)	793, 1030, 2068, 2534
BseRI	GAGGAG	9 cut(s)	39, 42, 45, 48, 51, 185, 188, 479, 2312
BseXI	GCAGC	6 cut(s)	846, 868, 1457, 1561, 2000, 2039
BsgI	GTGCAG	3 cut(s)	743, 1055, 1479
Bsh1236I	CGCG	5 cut(s)	162, 395, 413, 497, 883
Bsh1285I	CGRYCG	1 cut(s)	881
BshFI	GGCC	7 cut(s)	117, 155, 437, 1203, 1260, 1700, 1860
BsiEI	CGRYCG	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	1071
BsiHKCI	CYCGRG	1 cut(s)	1087
BsiSI	CCGG	7 cut(s)	324, 343, 524, 573, 788, 1489, 1701
BslFI	GGGAC	5 cut(s)	378, 1689, 1802, 2246, 2521
BslI	CCNNNNNNNGG	3 cut(s)	361, 433, 1825
BsmAI	GTCTC	3 cut(s)	98, 406, 674
BsmBI	CGTCTC	2 cut(s)	98, 674
BsmFI	GGGAC	5 cut(s)	378, 1689, 1802, 2246, 2521
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	7 cut(s)	117, 155, 437, 1203, 1260, 1700, 1860
Bso31I	GGTCTC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	1087
Bsp119I	TTCGAA	2 cut(s)	333, 518
Bsp1286I	GDGCHC	1 cut(s)	1071
Bsp13I	TCCGGA	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	824
Bsp143I	GATC	9 cut(s)	76, 708, 895, 979, 1083, 1156, 1632, 1719, 1868
Bsp68I	TCGCGA	1 cut(s)	413
BspANI	GGCC	7 cut(s)	117, 155, 437, 1203, 1260, 1700, 1860
BspCNI	CTCAG	3 cut(s)	670, 1762, 1877
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	5 cut(s)	162, 395, 413, 497, 883
BspHI	TCATGA	1 cut(s)	2284
BspLI	GGNNCC	4 cut(s)	166, 366, 1366, 1870
BspMI	ACCTGC	2 cut(s)	1748, 2120
BspOI	GCTAGC	1 cut(s)	1128
BspPI	GGATC	3 cut(s)	903, 1863, 1876
BspT104I	TTCGAA	2 cut(s)	333, 518
BspTNI	GGTCTC	1 cut(s)	406
BsrBI	CCGCTC	4 cut(s)	32, 216, 264, 1863
BsrDI	GCAATG	2 cut(s)	1537, 2527
BsrGI	TGTACA	1 cut(s)	824
BsrI	ACTGG	4 cut(s)	793, 1030, 2068, 2534
BssECI	CCNNGG	3 cut(s)	160, 1536, 2451
BssMI	GATC	9 cut(s)	76, 708, 895, 979, 1083, 1156, 1632, 1719, 1868
BssSI	CACGAG	1 cut(s)	403
BssT1I	CCWWGG	1 cut(s)	1536
Bst2BI	CACGAG	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	1555
Bst4CI	ACNGT	2 cut(s)	879, 2330
Bst6I	CTCTTC	1 cut(s)	2452
BstAUI	TGTACA	1 cut(s)	824
BstBI	TTCGAA	2 cut(s)	333, 518
BstC8I	GCNNGC	4 cut(s)	157, 1126, 1450, 1951
BstDEI	CTNAG	4 cut(s)	678, 933, 1770, 1864
BstDSI	CCRYGG	2 cut(s)	160, 2451
BstFNI	CGCG	5 cut(s)	162, 395, 413, 497, 883
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	9 cut(s)	79, 711, 898, 982, 1086, 1159, 1635, 1722, 1871
BstMAI	GTCTC	3 cut(s)	98, 406, 674
BstMBI	GATC	9 cut(s)	76, 708, 895, 979, 1083, 1156, 1632, 1719, 1868
BstMCI	CGRYCG	1 cut(s)	881
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 1280, 1667
BstNI	CCWGG	1 cut(s)	1555
BstNSI	RCATGY	6 cut(s)	1246, 1749, 1842, 1953, 1988, 2514
BstSCI	CCNGG	5 cut(s)	341, 572, 1487, 1553, 1700
BstUI	CGCG	5 cut(s)	162, 395, 413, 497, 883
BstV1I	GCAGC	6 cut(s)	846, 868, 1457, 1561, 2000, 2039
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	1868
BstXI	CCANNNNNNTGG	1 cut(s)	1808
BstYI	RGATCY	1 cut(s)	1868
BsuRI	GGCC	7 cut(s)	117, 155, 437, 1203, 1260, 1700, 1860
BtgI	CCRYGG	2 cut(s)	160, 2451
BtgZI	GCGATG	2 cut(s)	410, 1065
BtsI	GCAGTG	3 cut(s)	1197, 2349, 2424
BtsIMutI	CAGTG	8 cut(s)	1023, 1197, 1356, 2061, 2075, 2335, 2349, 2424
BtuMI	TCGCGA	1 cut(s)	413
BveI	ACCTGC	2 cut(s)	1748, 2120
Cac8I	GCNNGC	4 cut(s)	157, 1126, 1450, 1951
CciI	TCATGA	1 cut(s)	2284
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	6 cut(s)	154, 345, 365, 790, 1858, 2224
Cfr42I	CCGCGG	1 cut(s)	163
CseI	GACGC	2 cut(s)	298, 486
Csp6I	GTAC	2 cut(s)	825, 2279
CviQI	GTAC	2 cut(s)	825, 2279
DdeI	CTNAG	4 cut(s)	678, 933, 1770, 1864
DpnI	GATC	9 cut(s)	78, 710, 897, 981, 1085, 1158, 1634, 1721, 1870
DpnII	GATC	9 cut(s)	76, 708, 895, 979, 1083, 1156, 1632, 1719, 1868
DriI	GACNNNNNGTC	1 cut(s)	2352
EaeI	YGGCCR	2 cut(s)	115, 1258
Eam1104I	CTCTTC	1 cut(s)	2452
Eam1105I	GACNNNNNGTC	1 cut(s)	2352
EarI	CTCTTC	1 cut(s)	2452
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	1069
Eco130I	CCWWGG	1 cut(s)	1536
Eco24I	GRGCYC	1 cut(s)	1071
Eco31I	GGTCTC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	1314
Eco47I	GGWCC	4 cut(s)	345, 365, 790, 2224
Eco53kI	GAGCTC	1 cut(s)	1069
Eco57I	CTGAAG	2 cut(s)	1154, 1380
Eco88I	CYCGRG	1 cut(s)	1087
EcoICRI	GAGCTC	1 cut(s)	1069
EcoRII	CCWGG	1 cut(s)	1553
EcoRV	GATATC	1 cut(s)	1314
EcoT14I	CCWWGG	1 cut(s)	1536
EcoT22I	ATGCAT	3 cut(s)	655, 1339, 1840
EcoT38I	GRGCYC	1 cut(s)	1071
ErhI	CCWWGG	1 cut(s)	1536
Esp3I	CGTCTC	2 cut(s)	98, 674
FaqI	GGGAC	5 cut(s)	378, 1689, 1802, 2246, 2521
FauI	CCCGC	5 cut(s)	37, 43, 164, 227, 269
FauNDI	CATATG	1 cut(s)	1339
FbaI	TGATCA	2 cut(s)	708, 1632
FblI	GTMKAC	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	1071
FspBI	CTAG	8 cut(s)	380, 714, 1125, 1403, 1410, 1428, 1665, 2136
GlaI	GCGC	1 cut(s)	394
HaeIII	GGCC	7 cut(s)	117, 155, 437, 1203, 1260, 1700, 1860
HapII	CCGG	7 cut(s)	324, 343, 524, 573, 788, 1489, 1701
HgaI	GACGC	2 cut(s)	298, 486
HhaI	GCGC	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	2 cut(s)	1281, 2112
HinfI	GANTC	8 cut(s)	281, 520, 584, 962, 1511, 2021, 2398, 2477
HpaII	CCGG	7 cut(s)	324, 343, 524, 573, 788, 1489, 1701
HphI	GGTGA	4 cut(s)	703, 956, 1095, 2161
Hpy166II	GTNNAC	6 cut(s)	247, 313, 798, 1011, 1180, 1267
Hpy188I	TCNGA	6 cut(s)	76, 589, 738, 984, 1156, 1771
Hpy8I	GTNNAC	6 cut(s)	247, 313, 798, 1011, 1180, 1267
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	4 cut(s)	622, 964, 1129, 1355
HpyCH4III	ACNGT	2 cut(s)	879, 2330
HpyCH4IV	ACGT	2 cut(s)	1118, 1968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 1280, 1667
HpyF3I	CTNAG	4 cut(s)	678, 933, 1770, 1864
HpySE526I	ACGT	2 cut(s)	1118, 1968
HspAI	GCGC	1 cut(s)	393
Kpn2I	TCCGGA	1 cut(s)	523
Ksp22I	TGATCA	2 cut(s)	708, 1632
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	9 cut(s)	76, 708, 895, 979, 1083, 1156, 1632, 1719, 1868
Lsp1109I	GCAGC	6 cut(s)	846, 868, 1457, 1561, 2000, 2039
MaeI	CTAG	8 cut(s)	380, 714, 1125, 1403, 1410, 1428, 1665, 2136
MaeII	ACGT	2 cut(s)	1118, 1968
MaeIII	GTNAC	4 cut(s)	691, 1964, 2344, 2420
MalI	GATC	9 cut(s)	78, 710, 897, 981, 1085, 1158, 1634, 1721, 1870
MbiI	CCGCTC	4 cut(s)	32, 216, 264, 1863
MboI	GATC	9 cut(s)	76, 708, 895, 979, 1083, 1156, 1632, 1719, 1868
MboII	GAAGA	5 cut(s)	343, 597, 1315, 2087, 2469
MflI	RGATCY	1 cut(s)	1868
MhlI	GDGCHC	1 cut(s)	1071
MlsI	TGGCCA	1 cut(s)	1260
MluCI	AATT	9 cut(s)	641, 1216, 1228, 1306, 1386, 1889, 2047, 2249, 2336
MluI	ACGCGT	1 cut(s)	495
MluNI	TGGCCA	1 cut(s)	1260
MlyI	GAGTC	3 cut(s)	275, 593, 1520
MmeI	TCCRAC	2 cut(s)	567, 2158
Mox20I	TGGCCA	1 cut(s)	1260
Mph1103I	ATGCAT	3 cut(s)	655, 1339, 1840
MroI	TCCGGA	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	1784
MscI	TGGCCA	1 cut(s)	1260
MseI	TTAA	6 cut(s)	567, 1077, 1215, 1590, 1706, 1896
MslI	CAYNNNNRTG	3 cut(s)	443, 1656, 1927
Msp20I	TGGCCA	1 cut(s)	1260
MspA1I	CMGCKG	2 cut(s)	162, 859
MspI	CCGG	7 cut(s)	324, 343, 524, 573, 788, 1489, 1701
MspR9I	CCNGG	5 cut(s)	343, 574, 1489, 1555, 1702
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	1 cut(s)	1555
MvnI	CGCG	5 cut(s)	162, 395, 413, 497, 883
MwoI	GCNNNNNNNGC	3 cut(s)	222, 1280, 1667
NciI	CCSGG	4 cut(s)	343, 574, 1489, 1702
NdeI	CATATG	1 cut(s)	1339
NdeII	GATC	9 cut(s)	76, 708, 895, 979, 1083, 1156, 1632, 1719, 1868
NheI	GCTAGC	1 cut(s)	1124
NlaIV	GGNNCC	4 cut(s)	166, 366, 1366, 1870
NmeAIII	GCCGAG	1 cut(s)	1979
NmuCI	GTSAC	4 cut(s)	691, 1964, 2344, 2420
NruI	TCGCGA	1 cut(s)	413
NsiI	ATGCAT	3 cut(s)	655, 1339, 1840
NspI	RCATGY	6 cut(s)	1246, 1749, 1842, 1953, 1988, 2514
NspV	TTCGAA	2 cut(s)	333, 518
PaeI	GCATGC	1 cut(s)	1953
PagI	TCATGA	1 cut(s)	2284
PciI	ACATGT	1 cut(s)	2510
PcsI	WCGNNNNNNNCGW	4 cut(s)	240, 392, 410, 417
PctI	GAATGC	1 cut(s)	862
PdmI	GAANNNNTTC	1 cut(s)	1784
PfeI	GAWTC	5 cut(s)	520, 962, 2021, 2398, 2477
PflMI	CCANNNNNTGG	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	1487
PleI	GAGTC	3 cut(s)	275, 592, 1519
PpsI	GAGTC	3 cut(s)	275, 592, 1519
PscI	ACATGT	1 cut(s)	2510
PsiI	TTATAA	5 cut(s)	474, 506, 1320, 1496, 2360
Psp124BI	GAGCTC	1 cut(s)	1071
Psp6I	CCWGG	1 cut(s)	1553
PspGI	CCWGG	1 cut(s)	1553
PspN4I	GGNNCC	4 cut(s)	166, 366, 1366, 1870
PspPI	GGNCC	6 cut(s)	154, 345, 365, 790, 1858, 2224
PsuI	RGATCY	1 cut(s)	1868
PvuII	CAGCTG	1 cut(s)	859
RruI	TCGCGA	1 cut(s)	413
RsaI	GTAC	2 cut(s)	826, 2280
RsaNI	GTAC	2 cut(s)	825, 2279
RseI	CAYNNNNRTG	3 cut(s)	443, 1656, 1927
SacI	GAGCTC	1 cut(s)	1071
SacII	CCGCGG	1 cut(s)	163
SaqAI	TTAA	6 cut(s)	567, 1077, 1215, 1590, 1706, 1896
Sau3AI	GATC	9 cut(s)	76, 708, 895, 979, 1083, 1156, 1632, 1719, 1868
Sau96I	GGNCC	6 cut(s)	154, 345, 365, 790, 1858, 2224
SchI	GAGTC	3 cut(s)	275, 593, 1520
ScrFI	CCNGG	5 cut(s)	343, 574, 1489, 1555, 1702
SduI	GDGCHC	1 cut(s)	1071
Sfr303I	CCGCGG	1 cut(s)	163
SfuI	TTCGAA	2 cut(s)	333, 518
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	4 cut(s)	345, 365, 790, 2224
SmiMI	CAYNNNNRTG	3 cut(s)	443, 1656, 1927
SmlI	CTYRAG	2 cut(s)	581, 1694
SmoI	CTYRAG	2 cut(s)	581, 1694
SphI	GCATGC	1 cut(s)	1953
Sse9I	AATT	9 cut(s)	641, 1216, 1228, 1306, 1386, 1889, 2047, 2249, 2336
SspI	AATATT	1 cut(s)	2312
SspMI	CTAG	8 cut(s)	380, 714, 1125, 1403, 1410, 1428, 1665, 2136
SstI	GAGCTC	1 cut(s)	1071
StyD4I	CCNGG	5 cut(s)	341, 572, 1487, 1553, 1700
StyI	CCWWGG	1 cut(s)	1536
TaaI	ACNGT	2 cut(s)	879, 2330
TaiI	ACGT	2 cut(s)	1121, 1971
TaqI	TCGA	5 cut(s)	144, 333, 518, 773, 1065
TaqII	GACCGA	1 cut(s)	2241
TasI	AATT	9 cut(s)	641, 1216, 1228, 1306, 1386, 1889, 2047, 2249, 2336
TatI	WGTACW	2 cut(s)	824, 2278
TauI	GCSGC	5 cut(s)	162, 165, 225, 1664, 1863
TfiI	GAWTC	5 cut(s)	520, 962, 2021, 2398, 2477
Tru1I	TTAA	6 cut(s)	567, 1077, 1215, 1590, 1706, 1896
Tru9I	TTAA	6 cut(s)	567, 1077, 1215, 1590, 1706, 1896
TscAI	CASTG	8 cut(s)	1030, 1197, 1363, 2068, 2075, 2335, 2349, 2431
TseFI	GTSAC	4 cut(s)	691, 1964, 2344, 2420
TseI	GCWGC	6 cut(s)	856, 859, 1445, 1574, 1988, 2027
Tsp45I	GTSAC	4 cut(s)	691, 1964, 2344, 2420
TspDTI	ATGAA	6 cut(s)	1398, 2018, 2117, 2232, 2273, 2480
TspGWI	ACGGA	2 cut(s)	698, 2393
TspRI	CASTG	8 cut(s)	1030, 1197, 1363, 2068, 2075, 2335, 2349, 2431
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	4 cut(s)	345, 365, 790, 2224
XapI	RAATTY	4 cut(s)	1228, 1306, 1889, 2047
XceI	RCATGY	6 cut(s)	1246, 1749, 1842, 1953, 1988, 2514
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	1784
XspI	CTAG	8 cut(s)	380, 714, 1125, 1403, 1410, 1428, 1665, 2136
Zsp2I	ATGCAT	3 cut(s)	655, 1339, 1840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.