Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Reverse (-)

5503777 .. 5505307

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1078500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGATAAAGTTCGACTCTTTATTTCTTGATGTTTATTGTCACGGACGTAAAAAGATAGAGCGTGTATGCTTCAAAATTGTAAGACAAAAGCCTATCAATTTTTCTAGTAACAGAAATTTGAAATGGAATTCAGAGTTAGCCGTTAGTGACAAACATGCCAAGCCTGAGCCTCTCTCTTCCCGCTCCCGCCAAACTCCCACCACCTCCTCCTCTCCGCCCCCCCAGAAAGCCACCAACTTTGACCTTCTCAACAACCGTCTGATCAGCCACATTCATGTCGGCCATCTCCACAAAGCAATCACCACCCTCGATCTCATGGCACAGCGCGGGACGCACACGGACCTCCCCGCCTACTCCCTCCTCCTCAAGTCCTGCATCCGATCCCGGAACTTCGACCTCGATTTCGACATTTCTTCATATGCTCGAACATGGGTTAAGTATTGCTTCGCATCGGTGATTCGGGCGTGTTTGAATGCCCGAAATATTGGGATTGGGAAGATAATTTTTGGGTCAGTGATCAAAAGTGGGTATCTTGGGTCTGATGTGTGTGTTGGGTGCTCATTAATCGATATGTTTGCCAAGGGTAGTGGAGATTTGGGTGAAGCGTATATGTTTGCTCAGATGGGTTTCCCCAGAGAGGCAATTGATTTGTATGTAGATATGTTGTTGAGTGGGCTCATGCCTGACCAGTTTGCACTAAGTGGCGTTATATTGGCGTGCACAAAGTTGGAATCACTATCATTAGGGCAGCAATTGCATTCGTGGGTTATACAGTCTGGATTGGCTTTAGGTCATTGTGTCGGGTGTTGTTTGGTGGACATGTATTCCAAGTGTGCGGCTGATGGATCGATGAATGATGCGAGGAAGGTATTTGATCGGATGCTAAACAATAATGTTGTGTCATGGACTGCAATTATCAATGGATATGTGCAGAGCGGAAAGGGTGATGAGGAAGCCATCAAACTCTTTGTTGAAATGATGTCAGGTCTTGTTCTGCCAAACCATTTCACCTTTTCTAGCATTCTGAAGACTAGTGCAAATCTTTTGGATCTGCGTACGGGTGAACAAGTTCACTCCTTGGAAGTGAAATCAGGCCAGGTGGAAGATGCCCACAAATCTTCTGATGTTCTGTATGAGAAAAATTTGATATCTTATAACACAGTCGTTGATGCATATGCCAAGCATTCAGACGCAGAAGAAGCCTTTGGACTTTTTCATGAAATTCAGGATACAGGATTTGGGGCTGGTGCTTTCACATTTTCTAGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

424

Amino Acids

46.7

Weight (kDa)

7.19

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	298 - 344	2e-10	PPR repeat family
PPR_2	PF13041	381 - 423	1e-06	PPR repeat family
PPR	PF01535	383 - 412	4.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1155
AccBSI	CCGCTC	2 cut(s)	183, 936
AccII	CGCG	1 cut(s)	327
AciI	CCGC	7 cut(s)	181, 187, 215, 327, 348, 836, 936
AclWI	GGATC	3 cut(s)	375, 853, 1056
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	4 cut(s)	115, 127, 1141, 1221
AcuI	CTGAAG	1 cut(s)	1046
AdeI	CACNNNGTG	1 cut(s)	701
AfaI	GTAC	1 cut(s)	1057
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	4 cut(s)	73, 121, 472, 974
AhlI	ACTAGT	1 cut(s)	1031
AjnI	CCWGG	1 cut(s)	1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	1188, 1220
Alw21I	GWGCWC	2 cut(s)	560, 722
Alw44I	GTGCAC	1 cut(s)	718
AlwI	GGATC	3 cut(s)	375, 853, 1056
AoxI	GGCC	2 cut(s)	280, 1093
ApaLI	GTGCAC	1 cut(s)	718
ApeKI	GCWGC	1 cut(s)	748
ApoI	RAATTY	4 cut(s)	115, 127, 1141, 1221
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AseI	ATTAAT	1 cut(s)	563
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	6 cut(s)	292, 466, 611, 956, 1000, 1073
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	1034
Bbv12I	GWGCWC	2 cut(s)	560, 722
BbvI	GCAGC	1 cut(s)	760
BccI	CCATC	4 cut(s)	291, 616, 836, 965
BceAI	ACGGC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	1097
BciVI	GTATCC	1 cut(s)	1222
BclI	TGATCA	2 cut(s)	261, 516
BcnI	CCSGG	1 cut(s)	385
BcuI	ACTAGT	1 cut(s)	1031
BfaI	CTAG	5 cut(s)	105, 1017, 1032, 1263, 1270
BfuI	GTATCC	1 cut(s)	1222
BisI	GCNGC	2 cut(s)	749, 837
BlsI	GCNGC	2 cut(s)	750, 838
Bme1390I	CCNGG	2 cut(s)	385, 1097
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	385, 1097
BmsI	GCATC	6 cut(s)	384, 458, 847, 870, 1096, 1159
BpiI	GAAGAC	1 cut(s)	1034
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	385
Bsa29I	ATCGAT	2 cut(s)	567, 848
BsaJI	CCNNGG	2 cut(s)	579, 1077
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse1I	ACTGG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	1097
BseCI	ATCGAT	2 cut(s)	567, 848
BseDI	CCNNGG	2 cut(s)	579, 1077
BseGI	GGATG	2 cut(s)	375, 885
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMII	CTCAG	2 cut(s)	156, 632
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	4 cut(s)	196, 199, 350, 353
BseSI	GKGCMC	1 cut(s)	722
BseXI	GCAGC	1 cut(s)	760
BsgI	GTGCAG	1 cut(s)	950
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	282, 1095
BshVI	ATCGAT	2 cut(s)	567, 848
BsiHKAI	GWGCWC	2 cut(s)	560, 722
BsiSI	CCGG	1 cut(s)	385
BsiWI	CGTACG	1 cut(s)	1055
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	4 cut(s)	478, 757, 1020, 1183
BsnI	GGCC	2 cut(s)	282, 1095
Bsp1286I	GDGCHC	3 cut(s)	560, 678, 722
Bsp143I	GATC	7 cut(s)	261, 310, 380, 516, 845, 874, 1048
BspACI	CCGC	7 cut(s)	181, 187, 215, 327, 348, 836, 936
BspANI	GGCC	2 cut(s)	282, 1095
BspCNI	CTCAG	2 cut(s)	157, 631
BspDI	ATCGAT	2 cut(s)	567, 848
BspFNI	CGCG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	1216
BspPI	GGATC	3 cut(s)	375, 853, 1056
BsrBI	CCGCTC	2 cut(s)	183, 936
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	579, 1077
BssMI	GATC	7 cut(s)	261, 310, 380, 516, 845, 874, 1048
BssT1I	CCWWGG	2 cut(s)	579, 1077
Bst2UI	CCWGG	1 cut(s)	1097
Bst4CI	ACNGT	3 cut(s)	257, 774, 1162
Bst6I	CTCTTC	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	754
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	3 cut(s)	165, 618, 698
BstF5I	GGATG	2 cut(s)	375, 885
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	7 cut(s)	264, 313, 383, 519, 848, 877, 1051
BstMBI	GATC	7 cut(s)	261, 310, 380, 516, 845, 874, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 754, 1199
BstNI	CCWGG	1 cut(s)	1097
BstNSI	RCATGY	2 cut(s)	158, 823
BstSCI	CCNGG	2 cut(s)	383, 1095
BstSLI	GKGCMC	1 cut(s)	722
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	760
BstV2I	GAAGAC	1 cut(s)	1034
BstX2I	RGATCY	1 cut(s)	1048
BstYI	RGATCY	1 cut(s)	1048
Bsu15I	ATCGAT	2 cut(s)	567, 848
BsuI	GTATCC	1 cut(s)	1222
BsuRI	GGCC	2 cut(s)	282, 1095
BsuTUI	ATCGAT	2 cut(s)	567, 848
BtsCI	GGATG	2 cut(s)	375, 885
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	718
CciI	TCATGA	1 cut(s)	1216
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	340
ClaI	ATCGAT	2 cut(s)	567, 848
CseI	GACGC	2 cut(s)	340, 1199
Csp6I	GTAC	1 cut(s)	1056
CspCI	CAANNNNNGTGG	4 cut(s)	220, 255, 568, 603
CviAII	CATG	8 cut(s)	155, 275, 316, 429, 679, 820, 903, 1217
CviQI	GTAC	1 cut(s)	1056
DdeI	CTNAG	3 cut(s)	165, 618, 698
DpnI	GATC	7 cut(s)	263, 312, 382, 518, 847, 876, 1050
DpnII	GATC	7 cut(s)	261, 310, 380, 516, 845, 874, 1048
DraIII	CACNNNGTG	1 cut(s)	701
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	579, 1077
Eco24I	GRGCYC	1 cut(s)	678
Eco32I	GATATC	1 cut(s)	1149
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	1046
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	1095
EcoRV	GATATC	1 cut(s)	1149
EcoT14I	CCWWGG	2 cut(s)	579, 1077
EcoT22I	ATGCAT	1 cut(s)	1174
EcoT38I	GRGCYC	1 cut(s)	678
ErhI	CCWWGG	2 cut(s)	579, 1077
FaeI	CATG	8 cut(s)	158, 278, 319, 432, 682, 823, 906, 1220
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	8 cut(s)	154, 274, 315, 428, 678, 819, 902, 1216
FauI	CCCGC	4 cut(s)	188, 194, 320, 355
FauNDI	CATATG	2 cut(s)	418, 1174
FbaI	TGATCA	2 cut(s)	261, 516
Fnu4HI	GCNGC	2 cut(s)	749, 837
FokI	GGATG	2 cut(s)	362, 892
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	2 cut(s)	749, 837
FspBI	CTAG	5 cut(s)	105, 1017, 1032, 1263, 1270
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	2 cut(s)	749, 837
HaeIII	GGCC	2 cut(s)	282, 1095
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	2 cut(s)	340, 1199
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	8 cut(s)	158, 278, 319, 432, 682, 823, 906, 1220
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	3 cut(s)	14, 457, 731
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	6 cut(s)	292, 466, 611, 956, 1000, 1073
Hpy166II	GTNNAC	4 cut(s)	720, 817, 1064, 1072
Hpy188I	TCNGA	9 cut(s)	133, 261, 380, 541, 621, 879, 1026, 1123, 1189
Hpy188III	TCNNGA	4 cut(s)	26, 777, 1217, 1226
Hpy8I	GTNNAC	4 cut(s)	720, 817, 1064, 1072
HpyAV	CCTTC	2 cut(s)	254, 859
HpyCH4III	ACNGT	3 cut(s)	257, 774, 1162
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	8 cut(s)	375, 695, 720, 757, 911, 931, 1037, 1172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 754, 1199
HpyF3I	CTNAG	3 cut(s)	165, 618, 698
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	8 cut(s)	158, 278, 319, 432, 682, 823, 906, 1220
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	2 cut(s)	261, 516
Kzo9I	GATC	7 cut(s)	261, 310, 380, 516, 845, 874, 1048
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	1 cut(s)	760
LweI	GCATC	6 cut(s)	384, 458, 847, 870, 1096, 1159
MaeI	CTAG	5 cut(s)	105, 1017, 1032, 1263, 1270
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	3 cut(s)	38, 107, 146
MalI	GATC	7 cut(s)	263, 312, 382, 518, 847, 876, 1050
MbiI	CCGCTC	2 cut(s)	183, 936
MboI	GATC	7 cut(s)	261, 310, 380, 516, 845, 874, 1048
MboII	GAAGA	7 cut(s)	168, 405, 508, 1039, 1110, 1115, 1208
MfeI	CAATTG	2 cut(s)	642, 752
MflI	RGATCY	1 cut(s)	1048
MhlI	GDGCHC	3 cut(s)	560, 678, 722
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	708
Mph1103I	ATGCAT	1 cut(s)	1174
MroXI	GAANNNNTTC	1 cut(s)	1068
MseI	TTAA	2 cut(s)	435, 563
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	385, 1097
MunI	CAATTG	2 cut(s)	642, 752
Mva1269I	GAATGC	4 cut(s)	478, 757, 1020, 1183
MvaI	CCWGG	1 cut(s)	1097
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	331, 754, 1199
NciI	CCSGG	1 cut(s)	385
NdeI	CATATG	2 cut(s)	418, 1174
NdeII	GATC	7 cut(s)	261, 310, 380, 516, 845, 874, 1048
NlaIII	CATG	8 cut(s)	158, 278, 319, 432, 682, 823, 906, 1220
NmuCI	GTSAC	2 cut(s)	38, 146
NsiI	ATGCAT	1 cut(s)	1174
NspI	RCATGY	2 cut(s)	158, 823
PagI	TCATGA	1 cut(s)	1216
PciI	ACATGT	1 cut(s)	819
PctI	GAATGC	4 cut(s)	478, 757, 1020, 1183
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	2 cut(s)	457, 731
Pfl23II	CGTACG	1 cut(s)	1055
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	750, 838
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	819
PshBI	ATTAAT	1 cut(s)	563
PsiI	TTATAA	1 cut(s)	1155
Psp6I	CCWGG	1 cut(s)	1095
PspGI	CCWGG	1 cut(s)	1095
PspLI	CGTACG	1 cut(s)	1055
PspPI	GGNCC	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	1048
RsaI	GTAC	1 cut(s)	1057
RsaNI	GTAC	1 cut(s)	1056
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	435, 563
SatI	GCNGC	2 cut(s)	749, 837
Sau3AI	GATC	7 cut(s)	261, 310, 380, 516, 845, 874, 1048
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	385, 1097
SduI	GDGCHC	3 cut(s)	560, 678, 722
SfaNI	GCATC	6 cut(s)	384, 458, 847, 870, 1096, 1159
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SpeI	ACTAGT	1 cut(s)	1031
SsiI	CCGC	7 cut(s)	181, 187, 215, 327, 348, 836, 936
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	5 cut(s)	105, 1017, 1032, 1263, 1270
StyD4I	CCNGG	2 cut(s)	383, 1095
StyI	CCWWGG	2 cut(s)	579, 1077
TaaI	ACNGT	3 cut(s)	257, 774, 1162
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	8 cut(s)	12, 309, 393, 399, 405, 424, 567, 848
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	2 cut(s)	457, 731
Tru1I	TTAA	2 cut(s)	435, 563
Tru9I	TTAA	2 cut(s)	435, 563
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	2 cut(s)	38, 146
TseI	GCWGC	1 cut(s)	748
Tsp45I	GTSAC	2 cut(s)	38, 146
TspDTI	ATGAA	5 cut(s)	263, 405, 866, 1205, 1233
TspGWI	ACGGA	2 cut(s)	57, 353
TspRI	CASTG	1 cut(s)	519
VneI	GTGCAC	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	340
VspI	ATTAAT	1 cut(s)	563
XapI	RAATTY	4 cut(s)	115, 127, 1141, 1221
XceI	RCATGY	2 cut(s)	158, 823
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	5 cut(s)	105, 1017, 1032, 1263, 1270
Zsp2I	ATGCAT	1 cut(s)	1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.