Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Reverse (-)

7438559 .. 7439230

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1104000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATCTCGACGTTTCTTGACATGCTCGAACATGGGTTTTACCCGAATGAGTATTGCTTTGCATCTGTGATTCGGGCGTGTTCGAATGCCCGGAATATTGGGATTGGGAAGATAATTTTTGGGTCGGTGATCAAGGGTGGGTTTCTTGGGTCTGATGTGTGTGTTGGGTGTTCATTGATCGATATGTTTGCGAAGGGTGGTGGAGATTTGGGTGAAGCGTATAAGGTGTTTGAGGAAATGCCTGAGACGGATGCGGTGACGTGGACTTTGATGATTACTAGGTTTGCACAGATGGGTTTCCCCAGAGAGGCTATTGGTTTGTATGTGGATATGTTGTTGAGTGGGTTCATGCCTGACCAGTTTGCACTAAGTGGTGTTATATCGGCGTGTACAAAGTTGGAATCACTTTCACTGGGCCAGCAATTGCATTCGTGGGTTATACGGTCTGGATTGGCTTTAGGTCATTGTGTCGGGTGTTGTTTGGTGGACATGTATGCCAAGTGTGCAGCTGATGGATCGATGAATGATGCAAGGAAGGTATTTGGTCGGATGCCAAACCATAATGTTATGTCATGGACTGCAATTATCAATGGATATGTGCAGAGCGGAAAGGGTGATGAGGAAGCCATCAAACTCTTTGTTGAAATGATGTCAGGTCATGTTCCACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

224

Amino Acids

24.17

Weight (kDa)

5.31

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	84 - 132	1.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	606
AciI	CCGC	2 cut(s)	254, 606
AclWI	GGATC	1 cut(s)	523
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	1 cut(s)	644
AjiI	CACGTC	1 cut(s)	261
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	523
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	4 cut(s)	139, 224, 268, 626
AsuII	TTCGAA	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	3 cut(s)	286, 506, 635
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	4 cut(s)	71, 241, 517, 540
BmuI	ACTGGG	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	91
Bsa29I	ATCGAT	2 cut(s)	180, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	358, 417
BseCI	ATCGAT	2 cut(s)	180, 518
BseGI	GGATG	2 cut(s)	256, 555
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	358, 417
BseXI	GCAGC	1 cut(s)	518
BsgI	GTGCAG	2 cut(s)	525, 620
BshFI	GGCC	1 cut(s)	417
BshVI	ATCGAT	2 cut(s)	180, 518
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmI	GAATGC	2 cut(s)	91, 427
BsnI	GGCC	1 cut(s)	417
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	3, 129, 177, 515
BspACI	CCGC	2 cut(s)	254, 606
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	2 cut(s)	180, 518
BspPI	GGATC	1 cut(s)	523
BspT104I	TTCGAA	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	606
BsrGI	TGTACA	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	358, 417
BssMI	GATC	4 cut(s)	3, 129, 177, 515
Bst4CI	ACNGT	2 cut(s)	444, 669
BstAUI	TGTACA	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	2 cut(s)	243, 368
BstF5I	GGATG	2 cut(s)	256, 555
BstKTI	GATC	4 cut(s)	6, 132, 180, 518
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	4 cut(s)	3, 129, 177, 515
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNSI	RCATGY	2 cut(s)	25, 493
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	518
Bsu15I	ATCGAT	2 cut(s)	180, 518
BsuRI	GGCC	1 cut(s)	417
BsuTUI	ATCGAT	2 cut(s)	180, 518
BtrI	CACGTC	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	256, 555
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	415
ClaI	ATCGAT	2 cut(s)	180, 518
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	6 cut(s)	22, 32, 349, 490, 573, 659
CviJI	RGCY	5 cut(s)	311, 417, 455, 509, 626
CviKI_1	RGCY	5 cut(s)	311, 417, 455, 509, 626
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	243, 368
DpnI	GATC	4 cut(s)	5, 131, 179, 517
DpnII	GATC	4 cut(s)	3, 129, 177, 515
DraIII	CACNNNGTG	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	6 cut(s)	25, 35, 352, 493, 576, 662
FatI	CATG	6 cut(s)	21, 31, 348, 489, 572, 658
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	2 cut(s)	263, 562
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	6 cut(s)	25, 35, 352, 493, 576, 662
HinfI	GANTC	2 cut(s)	70, 401
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	4 cut(s)	139, 224, 268, 626
Hpy166II	GTNNAC	3 cut(s)	264, 390, 487
Hpy188I	TCNGA	2 cut(s)	154, 549
Hpy188III	TCNNGA	3 cut(s)	7, 17, 447
Hpy8I	GTNNAC	3 cut(s)	264, 390, 487
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	187, 529
HpyCH4III	ACNGT	2 cut(s)	444, 669
HpyCH4IV	ACGT	2 cut(s)	11, 260
HpyCH4V	TGCA	8 cut(s)	62, 287, 365, 427, 506, 530, 581, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	2 cut(s)	243, 368
HpySE526I	ACGT	2 cut(s)	11, 260
Hsp92II	CATG	6 cut(s)	25, 35, 352, 493, 576, 662
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	3, 129, 177, 515
LpnPI	CCDG	9 cut(s)	104, 255, 316, 366, 371, 398, 431, 432, 639
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	4 cut(s)	71, 241, 517, 540
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	11, 260
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	4 cut(s)	5, 131, 179, 517
MbiI	CCGCTC	1 cut(s)	606
MboI	GATC	4 cut(s)	3, 129, 177, 515
MboII	GAAGA	1 cut(s)	121
MfeI	CAATTG	1 cut(s)	422
MluCI	AATT	3 cut(s)	114, 422, 582
MmeI	TCCRAC	2 cut(s)	378, 527
MnlI	CCTC	3 cut(s)	226, 301, 613
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	2 cut(s)	91, 427
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	4 cut(s)	3, 129, 177, 515
NlaIII	CATG	6 cut(s)	25, 35, 352, 493, 576, 662
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	2 cut(s)	25, 493
NspV	TTCGAA	1 cut(s)	83
PciI	ACATGT	1 cut(s)	489
PctI	GAATGC	2 cut(s)	91, 427
PfeI	GAWTC	2 cut(s)	70, 401
PkrI	GCNGC	1 cut(s)	508
PscI	ACATGT	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	4 cut(s)	3, 129, 177, 515
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	8 cut(s)	14, 228, 263, 284, 463, 511, 540, 658
SfaNI	GCATC	4 cut(s)	71, 241, 517, 540
SfuI	TTCGAA	1 cut(s)	83
Sse9I	AATT	3 cut(s)	114, 422, 582
SsiI	CCGC	2 cut(s)	254, 606
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	444, 669
TaiI	ACGT	2 cut(s)	14, 263
TaqI	TCGA	5 cut(s)	8, 27, 83, 180, 518
TasI	AATT	3 cut(s)	114, 422, 582
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	70, 401
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	162, 337, 536
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	417
XceI	RCATGY	2 cut(s)	25, 493
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.