Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Forward (+)

73522275 .. 73526051

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG557000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2556 bp

ATGCTGATTCCAAGCCTCTCGCTTCCTGCTCCCGCCAAATTCCCTCCGCCCTCTTCTTCTTCTTTTTCTCTCCGACACCACCAAGACCCAAACTTTGAGCCTCTCCACCGCCGTCTGATCACCCAAATCAATGTCGGCCATCTCCGCAACGCAATCTCCACCCTCGATCTCATGGCCCTCCGCGGCTCCCACCCTGACCTCCCCACCTACTCCCTCCTCCTCAAGTCCTGCCTCCGCTCCCGCAACTTCCACCTCGGGAAGCTCGTCCACGCGCGGCTGACTCAGTCCCAACTCGACCCCGACTCTGTCATTCTCAACTCCTTGATTAGCCTCTACTCGAAATCGGGAGACTTTGAAAAGGCGCGATCGATCTTTCAAACTATGGGAGAGAAGAGAAATTTGGTGTCTTGGAGTGCGATGGTGTCGTGTTTCGCGAACAACGGCATGTCGTTGGAGGCGGTTTCGGCGTTTGTTGATATGCTTGAGGAGGGGTTTTACCCGAACGAGTTTTGCTTTGCGTCGGTTGTTCGGGCGTGTTCGAATTCGGAGCATGTTGCGATTGGGAAGGTGGTTTTCGGGTCGGTGATTAAAACTGGGTATCTTGAGTCGGATGTGTGTGTTGGGTCTTCGTTGATTGATATGTTTGCTAAAGGTGGTGGGGACCTAAGGGATGCATATAAGGTGTTTGAGAAAATGGCTGAGACGGATGTGGTGACTTGGAGCTTGATGATCACCAGGTTTGCGCAGATGGGTGATCCTAGAAAGGCGGTTGAGTTGTATATGGATATGTTGTCAAATGGGCTAATGCCGGACCAGTTTACGATAAGTGGTGTTGTATCGGCTTGTACAAAGTTGGGGTCGTTGGCGTTGGGGCAGCAGTTGCATTCGTGGGCTGTGCGGTCTCGGTTGGGTTTGGATCACTGCGTTGGGTGTTGTTTGGTGGACATGTATGCCAAGTGTGGAGTTGGTGGGTCGATGAGTGATTCGAGGAAGGTGTTTGATCGGATGCGAGAGCATAGTGTTATGTCTTGGACTGCTGTTATCACTGGATATGTGCAGAGTGGAGGGGGCGATGAGGAAGCTGTCAAGCTATTTGTTGAAATGATCTCGTGTGGTCATGTTTCGCCGAATCATTTCACGTTTGCTAGCATTCTGAAGGCTTGTGCAAACCTTTCTGATCTGCGTAAGGGAGAGCAAGTTCACTCCCTTGCGGTGAAACTTGGTCTTGCATCGGTTAATTGTGTGGGGAATTCACTTATTAGCATGTATGCAAAGTCTGGCCAGGTGGAAGATGCGCGGAAAGCTTTTGATCTTCTGTATGAGAAGAATTTGATATCTTATAATACAATCGTTGATGCATATGCCAAGCATCTAGACACAGAAGAAGTTTTTGGACTTCTCCATGAAGTTGAGAATACCGGACTTGGGGCTAGTGCTTTCACATTTGCTAGTCTCTTGAGTGGAGCTGCCAGCCTTTGTGCAGTTGATAAGGGCGAGCAGATACATTCCCGGATTATAAAATCAGGATTTGAGTCAAACCAAAGCATTTGCAATGCCTTGGTTTCCATGTATTCCAGGTGTGGAAACATAGACGCTGCTTTTCTAGTGTTTAATGAGATGGAAGATTGGAATGTTATATCATGGACTTCAATGATCACAGGTTTTGCAAAACATGGTTATGCGGCTAGAGCTGTGGGACTGTTTAACCAAATGCTTGAGGCTGGGTTAAAACCGAATGAGATCACATATATTGCTGTTTTATCAGCATGTAGCCATGCCGGTTTGATTTCTGAGGGGTGGAAACACTTGAAGGAAATGCACCAACAACATGGTATTGTCCCAAAAATGGAACACTACGCATGTATGGTTGATTTATTGGGCCGCTCAGGATCCCTTGTAGAAGCCGTTGAGTTTATTAACTCAATGCCTTTCGAAGCTGATGCACTAATCTGGCGAACATTTCTTGGAGCATGCCGAGTGCATGGTGACATTGAGCTTGGGAAACATGCAGCAAAGATGATTATTAAGCAGAACCCACATGATTCAGCGGCATATAGCTTACTATCAAATTTGTATGCTTCCACGGGTCGGTGGGAAGAAGTAGCAAATATAAGAAAAAATATGAAAGAGAAAGCTTTGGTCAAAGAAGCAGGTTCTAGCTGGATAGAGGTGAAGAATAAGATGCACAAGTTCCATGTTGGAGATACTTCGCACCCAAAAGCACGGGAGATTTATGATGAACTAGACCAATTGGGTTCAAAGATAAAGAAATTGGGTTATGTCCCCGATACAGATTTTGTACTTCATGAGGTGGAAGAGGAGCAAAAGGAATATTATTTGTTTCAGCACAGTGAGAAATTAGCAGTGGCATTTGGTCTTATAAGCACATCGAAATCGAAACCCATAAGAGTATTCAAGAATCTCCGTGTTTGTGGAGATTGTCACACTGCACTTAAGTATATTTCAAAAGCCACGGGAAGAGAAATAGTGGTAAGAGATTCAAATCGGTTTCATCAGTTCAAGGATGGGACATGTTCTTGCAATGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

851

Amino Acids

94.09

Weight (kDa)

6.81

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	133 - 180	4.4e-06	PPR repeat family
PPR_2	PF13041	236 - 283	1.1e-09	PPR repeat family
PPR	PF01535	238 - 268	9.8e-06	PPR repeat
PPR_2	PF13041	340 - 390	3.9e-07	PPR repeat family
PPR_2	PF13041	544 - 591	1.6e-11	PPR repeat family
PPR	PF01535	546 - 576	2e-06	PPR repeat
E_motif	PF20431	661 - 723	1.2e-16	E motif
Eplus_motif	PF20430	729 - 751	8.7e-07	E+ motif
DYW_deaminase	PF14432	759 - 851	2.3e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1341, 1517, 2381
Acc16I	TGCGCA	1 cut(s)	744
Acc36I	ACCTGC	1 cut(s)	2141
AccBSI	CCGCTC	2 cut(s)	237, 1884
AccII	CGCG	6 cut(s)	183, 272, 274, 364, 434, 1297
AclWI	GGATC	4 cut(s)	749, 924, 1884, 1897
AcoI	YGGCCR	2 cut(s)	136, 1279
AcsI	RAATTY	6 cut(s)	38, 397, 541, 1249, 1327, 2068
AcuI	CTGAAG	1 cut(s)	1175
AfaI	GTAC	2 cut(s)	847, 2301
AfiI	CCNNNNNNNGG	3 cut(s)	1425, 1846, 2088
AflII	CTTAAG	1 cut(s)	2453
AflIII	ACRYGT	2 cut(s)	945, 2531
AjnI	CCWGG	3 cut(s)	734, 1281, 1574
AjuI	GAANNNNNNNTTGG	4 cut(s)	383, 415, 1374, 1406
AloI	GAACNNNNNNTCC	2 cut(s)	1182, 1214
Alw26I	GTCTC	4 cut(s)	342, 695, 906, 1457
AlwI	GGATC	4 cut(s)	749, 924, 1884, 1897
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	4 cut(s)	136, 174, 1279, 1879
ApeKI	GCWGC	4 cut(s)	874, 1466, 1595, 2009
ApoI	RAATTY	6 cut(s)	38, 397, 541, 1249, 1327, 2068
ArsI	GACNNNNNNTTYG	4 cut(s)	77, 109, 842, 874
Asp700I	GAANNNNTTC	1 cut(s)	1133
AspLEI	GCGC	4 cut(s)	274, 364, 745, 1297
AspS9I	GGNCC	4 cut(s)	175, 661, 811, 1879
AsuC2I	CCSGG	1 cut(s)	1510
AsuHPI	GGTGA	8 cut(s)	112, 595, 724, 724, 764, 1225, 1997, 2182
AsuII	TTCGAA	2 cut(s)	539, 1932
AsuNHI	GCTAGC	1 cut(s)	1145
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	661, 811
AxyI	CCTNAGG	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	1281
BamHI	GGATCC	1 cut(s)	1889
BauI	CACGAG	1 cut(s)	1108
BbsI	GAAGAC	1 cut(s)	618
BbvI	GCAGC	4 cut(s)	886, 1453, 1582, 2021
BccI	CCATC	5 cut(s)	147, 412, 742, 1612, 2519
BceAI	ACGGC	3 cut(s)	96, 457, 1889
BcgI	CGANNNNNNTGC	2 cut(s)	1922, 1956
BciT130I	CCWGG	3 cut(s)	736, 1283, 1576
BclI	TGATCA	3 cut(s)	117, 729, 1653
BcnI	CCSGG	1 cut(s)	1510
BcoDI	GTCTC	4 cut(s)	342, 695, 906, 1457
BfaI	CTAG	9 cut(s)	759, 1146, 1373, 1431, 1449, 1604, 1686, 2157, 2243
BfrI	CTTAAG	1 cut(s)	2453
BfuAI	ACCTGC	1 cut(s)	2141
BisI	GCNGC	9 cut(s)	184, 275, 875, 1467, 1596, 1683, 1882, 2010, 2049
BlsI	GCNGC	9 cut(s)	185, 276, 876, 1468, 1597, 1684, 1883, 2011, 2050
Bme1390I	CCNGG	4 cut(s)	736, 1283, 1510, 1576
Bme18I	GGWCC	2 cut(s)	661, 811
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	4 cut(s)	175, 661, 811, 1879
BmiI	GGNNCC	3 cut(s)	187, 662, 1891
BmrFI	CCNGG	4 cut(s)	736, 1283, 1510, 1576
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	8 cut(s)	661, 996, 1238, 1282, 1345, 1378, 1930, 2172
BmtI	GCTAGC	1 cut(s)	1149
BmuI	ACTGGG	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	1885
Bpu14I	TTCGAA	2 cut(s)	539, 1932
BpuEI	CTTGAG	5 cut(s)	206, 503, 623, 1477, 1736
BpuMI	CCSGG	1 cut(s)	1510
Bsa29I	ATCGAT	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	2502
BsaI	GGTCTC	1 cut(s)	906
BsaJI	CCNNGG	5 cut(s)	181, 253, 1557, 2082, 2472
BsaWI	WCCGGW	1 cut(s)	1418
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 1182, 1212
Bsc4I	CCNNNNNNNGG	3 cut(s)	1425, 1846, 2088
Bse118I	RCCGGY	1 cut(s)	1778
Bse1I	ACTGG	4 cut(s)	598, 814, 1051, 2555
Bse21I	CCTNAGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	1558, 2548
Bse8I	GATNNNNATC	1 cut(s)	2502
BseBI	CCWGG	3 cut(s)	736, 1283, 1576
BseCI	ATCGAT	1 cut(s)	368
BseDI	CCNNGG	5 cut(s)	181, 253, 1557, 2082, 2472
BseGI	GGATG	5 cut(s)	616, 676, 712, 1011, 2530
BseJI	GATNNNNATC	1 cut(s)	2502
BseLI	CCNNNNNNNGG	3 cut(s)	1425, 1846, 2088
BseMI	GCAATG	2 cut(s)	1558, 2548
BseMII	CTCAG	4 cut(s)	296, 690, 1782, 1899
BseNI	ACTGG	4 cut(s)	598, 814, 1051, 2555
BseRI	GAGGAG	4 cut(s)	206, 209, 500, 2333
BseXI	GCAGC	4 cut(s)	886, 1453, 1582, 2021
BseYI	CCCAGC	1 cut(s)	1721
BsgI	GTGCAG	3 cut(s)	1076, 1500, 2433
Bsh1236I	CGCG	6 cut(s)	183, 272, 274, 364, 434, 1297
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	4 cut(s)	138, 176, 1281, 1881
BshVI	ATCGAT	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	809, 1419, 1510, 1779
BslFI	GGGAC	6 cut(s)	271, 674, 1710, 1823, 2267, 2542
BslI	CCNNNNNNNGG	3 cut(s)	1425, 1846, 2088
BsmAI	GTCTC	4 cut(s)	342, 695, 906, 1457
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	6 cut(s)	271, 674, 1710, 1823, 2267, 2542
BsmI	GAATGC	2 cut(s)	883, 1149
BsnI	GGCC	4 cut(s)	138, 176, 1281, 1881
Bso31I	GGTCTC	1 cut(s)	906
BsoBI	CYCGRG	1 cut(s)	254
Bsp119I	TTCGAA	2 cut(s)	539, 1932
Bsp1407I	TGTACA	1 cut(s)	845
Bsp68I	TCGCGA	1 cut(s)	434
BspANI	GGCC	4 cut(s)	138, 176, 1281, 1881
BspCNI	CTCAG	4 cut(s)	295, 691, 1783, 1898
BspDI	ATCGAT	1 cut(s)	368
BspFNI	CGCG	6 cut(s)	183, 272, 274, 364, 434, 1297
BspHI	TCATGA	1 cut(s)	2305
BspLI	GGNNCC	3 cut(s)	187, 662, 1891
BspMI	ACCTGC	1 cut(s)	2141
BspOI	GCTAGC	1 cut(s)	1149
BspPI	GGATC	4 cut(s)	749, 924, 1884, 1897
BspT104I	TTCGAA	2 cut(s)	539, 1932
BspTI	CTTAAG	1 cut(s)	2453
BspTNI	GGTCTC	1 cut(s)	906
BsrBI	CCGCTC	2 cut(s)	237, 1884
BsrDI	GCAATG	2 cut(s)	1558, 2548
BsrFI	RCCGGY	1 cut(s)	1778
BsrGI	TGTACA	1 cut(s)	845
BsrI	ACTGG	4 cut(s)	598, 814, 1051, 2555
BssAI	RCCGGY	1 cut(s)	1778
BssECI	CCNNGG	5 cut(s)	181, 253, 1557, 2082, 2472
BssSI	CACGAG	1 cut(s)	1108
BssT1I	CCWWGG	1 cut(s)	1557
Bst2BI	CACGAG	1 cut(s)	1108
Bst2UI	CCWGG	3 cut(s)	736, 1283, 1576
Bst4CI	ACNGT	2 cut(s)	1701, 2351
Bst6I	CTCTTC	4 cut(s)	58, 386, 2310, 2473
BstAFI	CTTAAG	1 cut(s)	2453
BstAPI	GCANNNNNTGC	1 cut(s)	880
BstAUI	TGTACA	1 cut(s)	845
BstBI	TTCGAA	2 cut(s)	539, 1932
BstC8I	GCNNGC	4 cut(s)	1147, 1471, 1496, 1972
BstDEI	CTNAG	5 cut(s)	282, 665, 699, 1791, 1885
BstDSI	CCRYGG	3 cut(s)	181, 2082, 2472
BstF5I	GGATG	5 cut(s)	616, 676, 712, 1011, 2530
BstFNI	CGCG	6 cut(s)	183, 272, 274, 364, 434, 1297
BstHHI	GCGC	4 cut(s)	274, 364, 745, 1297
BstMAI	GTCTC	4 cut(s)	342, 695, 906, 1457
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 464, 880, 1301, 1688
BstNI	CCWGG	3 cut(s)	736, 1283, 1576
BstNSI	RCATGY	9 cut(s)	448, 554, 949, 1267, 1770, 1863, 1974, 2009, 2535
BstSCI	CCNGG	4 cut(s)	734, 1281, 1508, 1574
BstUI	CGCG	6 cut(s)	183, 272, 274, 364, 434, 1297
BstV1I	GCAGC	4 cut(s)	886, 1453, 1582, 2021
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	1 cut(s)	1889
BstXI	CCANNNNNNTGG	1 cut(s)	1829
BstYI	RGATCY	1 cut(s)	1889
Bsu15I	ATCGAT	1 cut(s)	368
Bsu36I	CCTNAGG	1 cut(s)	665
BsuRI	GGCC	4 cut(s)	138, 176, 1281, 1881
BsuTUI	ATCGAT	1 cut(s)	368
BtgI	CCRYGG	3 cut(s)	181, 2082, 2472
BtgZI	GCGATG	2 cut(s)	431, 1086
BtsCI	GGATG	5 cut(s)	616, 676, 712, 1011, 2530
BtsI	GCAGTG	3 cut(s)	919, 2370, 2445
BtsIMutI	CAGTG	5 cut(s)	919, 1044, 2356, 2370, 2445
BtuMI	TCGCGA	1 cut(s)	434
BveI	ACCTGC	1 cut(s)	2141
Cac8I	GCNNGC	4 cut(s)	1147, 1471, 1496, 1972
CciI	TCATGA	1 cut(s)	2305
CfoI	GCGC	4 cut(s)	274, 364, 745, 1297
Cfr10I	RCCGGY	1 cut(s)	1778
Cfr13I	GGNCC	4 cut(s)	175, 661, 811, 1879
Cfr42I	CCGCGG	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	368
CseI	GACGC	2 cut(s)	507, 1601
CsiI	ACCWGGT	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	846, 2300
CviQI	GTAC	2 cut(s)	846, 2300
DdeI	CTNAG	5 cut(s)	282, 665, 699, 1791, 1885
EaeI	YGGCCR	2 cut(s)	136, 1279
Eam1104I	CTCTTC	4 cut(s)	58, 386, 2310, 2473
EarI	CTCTTC	4 cut(s)	58, 386, 2310, 2473
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	1557
Eco31I	GGTCTC	1 cut(s)	906
Eco32I	GATATC	1 cut(s)	1335
Eco47I	GGWCC	2 cut(s)	661, 811
Eco57I	CTGAAG	1 cut(s)	1175
Eco81I	CCTNAGG	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	661
EcoRI	GAATTC	2 cut(s)	541, 1249
EcoRII	CCWGG	3 cut(s)	734, 1281, 1574
EcoRV	GATATC	1 cut(s)	1335
EcoT14I	CCWWGG	1 cut(s)	1557
EcoT22I	ATGCAT	2 cut(s)	676, 1360
ErhI	CCWWGG	1 cut(s)	1557
Esp3I	CGTCTC	1 cut(s)	695
FaqI	GGGAC	6 cut(s)	271, 674, 1710, 1823, 2267, 2542
FauI	CCCGC	2 cut(s)	40, 248
FauNDI	CATATG	1 cut(s)	1360
FbaI	TGATCA	3 cut(s)	117, 729, 1653
Fnu4HI	GCNGC	9 cut(s)	184, 275, 875, 1467, 1596, 1683, 1882, 2010, 2049
FokI	GGATG	5 cut(s)	623, 683, 719, 1018, 2537
Fsp4HI	GCNGC	9 cut(s)	184, 275, 875, 1467, 1596, 1683, 1882, 2010, 2049
FspBI	CTAG	9 cut(s)	759, 1146, 1373, 1431, 1449, 1604, 1686, 2157, 2243
FspI	TGCGCA	1 cut(s)	744
GlaI	GCGC	4 cut(s)	273, 363, 744, 1296
GluI	GCNGC	9 cut(s)	184, 275, 875, 1467, 1596, 1683, 1882, 2010, 2049
GsaI	CCCAGC	1 cut(s)	1725
HaeIII	GGCC	4 cut(s)	138, 176, 1281, 1881
HapII	CCGG	4 cut(s)	809, 1419, 1510, 1779
HgaI	GACGC	2 cut(s)	507, 1601
HhaI	GCGC	4 cut(s)	274, 364, 745, 1297
Hin6I	GCGC	4 cut(s)	272, 362, 743, 1295
HinP1I	GCGC	4 cut(s)	272, 362, 743, 1295
HindIII	AAGCTT	2 cut(s)	1302, 2133
HpaII	CCGG	4 cut(s)	809, 1419, 1510, 1779
HphI	GGTGA	8 cut(s)	112, 595, 724, 724, 764, 1225, 1997, 2182
Hpy166II	GTNNAC	4 cut(s)	268, 819, 943, 1201
Hpy188I	TCNGA	8 cut(s)	74, 117, 547, 610, 1005, 1155, 1177, 1792
Hpy8I	GTNNAC	4 cut(s)	268, 819, 943, 1201
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	4 cut(s)	559, 985, 1150, 1804
HpyCH4III	ACNGT	2 cut(s)	1701, 2351
HpyCH4IV	ACGT	1 cut(s)	1139
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 464, 880, 1301, 1688
HpyF3I	CTNAG	5 cut(s)	282, 665, 699, 1791, 1885
HpySE526I	ACGT	1 cut(s)	1139
HspAI	GCGC	4 cut(s)	272, 362, 743, 1295
Ksp22I	TGATCA	3 cut(s)	117, 729, 1653
KspI	CCGCGG	1 cut(s)	184
LmnI	GCTCC	8 cut(s)	34, 191, 242, 547, 720, 1463, 1967, 2320
Lsp1109I	GCAGC	4 cut(s)	886, 1453, 1582, 2021
LweI	GCATC	8 cut(s)	661, 996, 1238, 1282, 1345, 1378, 1930, 2172
MabI	ACCWGGT	1 cut(s)	734
MaeI	CTAG	9 cut(s)	759, 1146, 1373, 1431, 1449, 1604, 1686, 2157, 2243
MaeII	ACGT	1 cut(s)	1139
MaeIII	GTNAC	3 cut(s)	712, 1985, 2441
MbiI	CCGCTC	2 cut(s)	237, 1884
MfeI	CAATTG	1 cut(s)	2249
MflI	RGATCY	1 cut(s)	1889
MlsI	TGGCCA	1 cut(s)	1281
MluNI	TGGCCA	1 cut(s)	1281
MlyI	GAGTC	4 cut(s)	274, 296, 614, 1541
MmeI	TCCRAC	4 cut(s)	97, 432, 588, 2179
Mox20I	TGGCCA	1 cut(s)	1281
Mph1103I	ATGCAT	2 cut(s)	676, 1360
MroXI	GAANNNNTTC	1 cut(s)	1133
MscI	TGGCCA	1 cut(s)	1281
MseI	TTAA	8 cut(s)	588, 1236, 1611, 1704, 1727, 1917, 2025, 2454
MslI	CAYNNNNRTG	1 cut(s)	1677
Msp20I	TGGCCA	1 cut(s)	1281
MspA1I	CMGCKG	2 cut(s)	183, 2048
MspCI	CTTAAG	1 cut(s)	2453
MspI	CCGG	4 cut(s)	809, 1419, 1510, 1779
MspR9I	CCNGG	4 cut(s)	736, 1283, 1510, 1576
MunI	CAATTG	1 cut(s)	2249
Mva1269I	GAATGC	2 cut(s)	883, 1149
MvaI	CCWGG	3 cut(s)	736, 1283, 1576
MvnI	CGCG	6 cut(s)	183, 272, 274, 364, 434, 1297
MwoI	GCNNNNNNNGC	5 cut(s)	144, 464, 880, 1301, 1688
NciI	CCSGG	1 cut(s)	1510
NdeI	CATATG	1 cut(s)	1360
NheI	GCTAGC	1 cut(s)	1145
NlaIV	GGNNCC	3 cut(s)	187, 662, 1891
NmeAIII	GCCGAG	1 cut(s)	2000
NmuCI	GTSAC	3 cut(s)	712, 1985, 2441
NruI	TCGCGA	1 cut(s)	434
NsbI	TGCGCA	1 cut(s)	744
NsiI	ATGCAT	2 cut(s)	676, 1360
NspI	RCATGY	9 cut(s)	448, 554, 949, 1267, 1770, 1863, 1974, 2009, 2535
NspV	TTCGAA	2 cut(s)	539, 1932
PaeI	GCATGC	1 cut(s)	1974
PagI	TCATGA	1 cut(s)	2305
PciI	ACATGT	2 cut(s)	945, 2531
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 431
PctI	GAATGC	2 cut(s)	883, 1149
PdmI	GAANNNNTTC	1 cut(s)	1133
PfeI	GAWTC	6 cut(s)	7, 983, 1129, 2042, 2419, 2498
PflFI	GACNNNGTC	2 cut(s)	283, 305
PfoI	TCCNGGA	1 cut(s)	1508
PkrI	GCNGC	9 cut(s)	185, 276, 876, 1468, 1597, 1684, 1883, 2011, 2050
Ple19I	CGATCG	1 cut(s)	368
PleI	GAGTC	4 cut(s)	274, 296, 613, 1540
PpsI	GAGTC	4 cut(s)	274, 296, 613, 1540
PpuMI	RGGWCCY	1 cut(s)	661
PscI	ACATGT	2 cut(s)	945, 2531
PsiI	TTATAA	3 cut(s)	1341, 1517, 2381
Psp5II	RGGWCCY	1 cut(s)	661
Psp6I	CCWGG	3 cut(s)	734, 1281, 1574
PspFI	CCCAGC	1 cut(s)	1721
PspGI	CCWGG	3 cut(s)	734, 1281, 1574
PspN4I	GGNNCC	3 cut(s)	187, 662, 1891
PspPI	GGNCC	4 cut(s)	175, 661, 811, 1879
PspPPI	RGGWCCY	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	1889
PsyI	GACNNNGTC	2 cut(s)	283, 305
PvuI	CGATCG	1 cut(s)	368
RruI	TCGCGA	1 cut(s)	434
RsaI	GTAC	2 cut(s)	847, 2301
RsaNI	GTAC	2 cut(s)	846, 2300
RseI	CAYNNNNRTG	1 cut(s)	1677
SacII	CCGCGG	1 cut(s)	184
SaqAI	TTAA	8 cut(s)	588, 1236, 1611, 1704, 1727, 1917, 2025, 2454
SatI	GCNGC	9 cut(s)	184, 275, 875, 1467, 1596, 1683, 1882, 2010, 2049
Sau96I	GGNCC	4 cut(s)	175, 661, 811, 1879
SchI	GAGTC	4 cut(s)	274, 296, 614, 1541
ScrFI	CCNGG	4 cut(s)	736, 1283, 1510, 1576
SexAI	ACCWGGT	1 cut(s)	734
SfaNI	GCATC	8 cut(s)	661, 996, 1238, 1282, 1345, 1378, 1930, 2172
Sfr303I	CCGCGG	1 cut(s)	184
SfuI	TTCGAA	2 cut(s)	539, 1932
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	661, 811
SmiMI	CAYNNNNRTG	1 cut(s)	1677
SmlI	CTYRAG	6 cut(s)	221, 482, 602, 1456, 1715, 2453
SmoI	CTYRAG	6 cut(s)	221, 482, 602, 1456, 1715, 2453
SphI	GCATGC	1 cut(s)	1974
SspI	AATATT	1 cut(s)	2333
SspMI	CTAG	9 cut(s)	759, 1146, 1373, 1431, 1449, 1604, 1686, 2157, 2243
StyD4I	CCNGG	4 cut(s)	734, 1281, 1508, 1574
StyI	CCWWGG	1 cut(s)	1557
TaaI	ACNGT	2 cut(s)	1701, 2351
TaiI	ACGT	1 cut(s)	1142
TatI	WGTACW	2 cut(s)	845, 2299
TauI	GCSGC	5 cut(s)	186, 277, 1685, 1884, 2051
TfiI	GAWTC	6 cut(s)	7, 983, 1129, 2042, 2419, 2498
Tru1I	TTAA	8 cut(s)	588, 1236, 1611, 1704, 1727, 1917, 2025, 2454
Tru9I	TTAA	8 cut(s)	588, 1236, 1611, 1704, 1727, 1917, 2025, 2454
TscAI	CASTG	5 cut(s)	926, 1051, 2356, 2370, 2452
TseFI	GTSAC	3 cut(s)	712, 1985, 2441
TseI	GCWGC	4 cut(s)	874, 1466, 1595, 2009
Tsp45I	GTSAC	3 cut(s)	712, 1985, 2441
TspDTI	ATGAA	5 cut(s)	1419, 2138, 2253, 2294, 2501
TspGWI	ACGGA	2 cut(s)	719, 2414
TspRI	CASTG	5 cut(s)	926, 1051, 2356, 2370, 2452
Tth111I	GACNNNGTC	2 cut(s)	283, 305
Vha464I	CTTAAG	1 cut(s)	2453
VpaK11BI	GGWCC	2 cut(s)	661, 811
XapI	RAATTY	6 cut(s)	38, 397, 541, 1249, 1327, 2068
XbaI	TCTAGA	1 cut(s)	1372
XceI	RCATGY	9 cut(s)	448, 554, 949, 1267, 1770, 1863, 1974, 2009, 2535
XmnI	GAANNNNTTC	1 cut(s)	1133
XspI	CTAG	9 cut(s)	759, 1146, 1373, 1431, 1449, 1604, 1686, 2157, 2243
Zsp2I	ATGCAT	2 cut(s)	676, 1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.