Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Forward (+)

75518671 .. 75521235

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGCTGATTCCAAGCCTCTCTCTTCCCGCTGCCGCCAAATTCCCTCCGCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCCGACACCACCAAGACCCAAACTTTGAGCCTCTCCACCGCCGTCTGATCACCCAAATCAATGTCGGCCATCTGCGCAACGCAATCTCCACCCTCGATCTCATGGCCCTCCGCGGCTCCCACCCTGACCTCCCCACCTACTCCCTCCTCCTCAAGTCCTGCCTCCGCTCCCGCAACTTCCACCTCGGGAAGCTCGTCCACGCCCGCCTCGCTCAGTCCCAACTCGACCCCGAATCTGTCATTCTCAACTCTTTGATTAGCCTCTACTCGAAATCGGGAGACTTTAAAAAGGCGCGATCGATCTTTCAAACTATGGGAGAGAAGAGAAACTTGGTGTCTTGGAGTGCGATGGTGTCGTGTTTCGCGAACAACGGCATGTCGTTGGAGGCGGTTGCGGCGTTTGTTGATATGCTTGAGGAGGGGTTTTACCCGAACGAGTTTTGCTTTGCGTCGGTTATTCGGGCGTGTTCGAATTCGGAGCATGTTGGGATTGGGAAGGTGGTTTTCGGGTCGGTGATTAAAACTGGGTATCTTGAGTCGGATGTGTGTGTTGGGTCTTCGTTGATTGATATGTTTGCGAAGGGTGGTGGGGACTTAAGGGATGCATATAAGGTGTTTGAGAAAATGGCTGAGACGGATGTGGTGACTTGGAGCTTGATGATCACTAGGTTTGCGCAGATGGGTGACCCGAGAAAGGCAGTTGAGTTGTATATGGATATGTTGTCAAATGGGCTAATGCCGGACCAGTTTACAATGAGTGGTGTTATGTCGGCTTGTACAAAGTTGGGGTCGTTGGCGTTGGGGCGGCAGTTGCATTCGTGGGCTGTACGGTCTCGGTTGGGTTTGGATCATTGTGTTGGGTGTTGTTTGGTGGACATGTATGCCAAGTGTGGAGGTGGTGGGTCGATGAGTGATTCGAGGAAGGTGTTTGATCGGATGCGAGAGCATAGTGTTATGTCATGGACTGCTGTTATCACTGGATACGTGCAGAGTGGAGGGGGCAATGAGGAAGCTGTCAAGCTATTTGTTGAAATGATCTCGTGTGGTCATGTTTCACCGAATCATTTCACGTTTGCTAGCATTCTGAAGGCTTGTGCAAACCTTTCTGATCTGCGTAAGGGAGAGCAAGTTCACTCCCTTGCAGTGAAACTTGGTCTTGCATCGGTTAATTGTGTGGGGAATTCACTTATTAGCATGTATGCAAAGTCTGGCCAGGTGGAAGATGCGCGGAAAGCTTTTGATCTTCTGTATGAGAAGAATTTGATATCTTATAATACAATCGTTGATGCATATGCCAAGCATCTAGACACAGAAGAAGCCTTTGGACTTCTCCATGAAGTCAAGAATACCGGACTTGGGGCTAGTGCTTTCACATTTGCTAGTCTCTTGAGTGGAGCTGCCAGCCTTTGTGCAGTTGATAAGGGCGAGCAAATACATTCCCGGATTATAAAATCAGGATTTGAGTCAAACCAAAGCATTTGCAATGCCTTGGTTTCTATGTATTCCAGGTGTGGAAACATAGACGCTGCTTTTCAAGTGTTTAATGAGATGGAAGATTGGAATGTTATATCATGGACTTCAATGATCACAGGTTTTGCAAAACATGGTTATGCGGCTAGAGCTGTGGGACTGTTTAACCAAATGCTTGAGGCTGGGTTAAAACCGAATGAGATCACATATATTGCTGTTTTATCAGCATGTAGCCATGCGGGTTTGATTTCTGAGGGGTGGAAACACTTGAAGGAAATGCACCAACAACATGGTATTGTCCCAAAAATGGAACACTATGCATGTATGGTTGATTTATTGGGCCGCTCAGGATCCCTTGTAGAAGCCATTGAGTTTATTAACTCAATGCCTTTTGAAGCTGATGCACTAATCTGGCGAACATTTCTTGGAGCATGCCGAGTGCATGGTGACATTGAGCTTGGGAAACATGCGGCAAAGATGATTATTAAGCAGAACCCACATGATTCAGCGGCATATAGCTTACTATCAAATTTGTATGCTTCCACAAGTCAGTGGGAAGAAGTAGCAAATATAAGAAAAAATATGAAAGAGAAAGCTTTGGTCAAAGAAGCAGGTTCTAGCTGGATAGAGGTGAAGAATAAGATGCACAAGTTCCATGTTGGAGATACTTCGCACCCAAAAGCACGGGAGATTTATGATGTACTGGACCAATTGGGTTCAAAGATAAAGAAATTGGGTTACGTCCCCGATACAGATTTTGTACTTCATGAGGTGGAAGAGGAGCAAAAGGAATATTATTTGCTTCAGCACAGTGAGAAATTAGCAGTGGCATTTGGTCTTATAAGCACATCGAAATCGAAACCCATAAGAGTATTCAAGAATCTCCGTGTTTGTGGAGATTGTCACACTGCAATTAAGTATATTTCAAAAGCCACGGGAAGAGAAATAGTGGTAAGGGATTCAAATCGGTTTCATCAGTTCAAGGATGGGACATGTTCTTGCAATGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

855

Amino Acids

94.21

Weight (kDa)

7.76

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	136 - 184	1.4e-06	PPR repeat family
PPR_2	PF13041	239 - 287	3.5e-10	PPR repeat family
PPR	PF01535	241 - 271	9.8e-06	PPR repeat
PPR_2	PF13041	343 - 393	7.3e-08	PPR repeat family
PPR_2	PF13041	446 - 492	3.9e-07	PPR repeat family
PPR_2	PF13041	516 - 548	2.7e-06	PPR repeat family
PPR_2	PF13041	547 - 594	1.6e-11	PPR repeat family
PPR	PF01535	549 - 579	2e-06	PPR repeat
E_motif	PF20431	664 - 726	2.4e-15	E motif
Eplus_motif	PF20430	732 - 754	1.1e-06	E+ motif
DYW_deaminase	PF14432	762 - 854	2e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1350, 1526, 2390
Acc16I	TGCGCA	2 cut(s)	155, 753
Acc36I	ACCTGC	1 cut(s)	2150
AccBSI	CCGCTC	2 cut(s)	246, 1893
AccII	CGCG	4 cut(s)	192, 373, 443, 1306
AclWI	GGATC	3 cut(s)	933, 1893, 1906
AcoI	YGGCCR	2 cut(s)	145, 1288
AcsI	RAATTY	5 cut(s)	38, 550, 1258, 1336, 2077
AcuI	CTGAAG	2 cut(s)	1184, 2336
AfaI	GTAC	4 cut(s)	856, 906, 2250, 2310
AfiI	CCNNNNNNNGG	3 cut(s)	772, 1434, 1855
AflII	CTTAAG	1 cut(s)	673
AflIII	ACRYGT	2 cut(s)	954, 2540
AjnI	CCWGG	2 cut(s)	1290, 1583
AjuI	GAANNNNNNNTTGG	4 cut(s)	392, 424, 1383, 1415
AloI	GAACNNNNNNTCC	2 cut(s)	1191, 1223
Alw26I	GTCTC	4 cut(s)	351, 704, 915, 1466
AlwI	GGATC	3 cut(s)	933, 1893, 1906
Ama87I	CYCGRG	2 cut(s)	263, 766
AoxI	GGCC	4 cut(s)	145, 183, 1288, 1888
ApeKI	GCWGC	3 cut(s)	29, 1475, 1604
ApoI	RAATTY	5 cut(s)	38, 550, 1258, 1336, 2077
ArsI	GACNNNNNNTTYG	4 cut(s)	86, 118, 851, 883
Asp700I	GAANNNNTTC	1 cut(s)	1142
AspLEI	GCGC	4 cut(s)	156, 373, 754, 1306
AspS9I	GGNCC	4 cut(s)	184, 820, 1888, 2254
AsuC2I	CCSGG	1 cut(s)	1519
AsuHPI	GGTGA	7 cut(s)	121, 604, 733, 773, 1125, 2006, 2191
AsuII	TTCGAA	1 cut(s)	548
AsuNHI	GCTAGC	1 cut(s)	1154
AvaI	CYCGRG	2 cut(s)	263, 766
AvaII	GGWCC	2 cut(s)	820, 2254
BalI	TGGCCA	1 cut(s)	1290
BamHI	GGATCC	1 cut(s)	1898
BauI	CACGAG	1 cut(s)	1117
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	16, 1462, 1591
BccI	CCATC	5 cut(s)	156, 421, 751, 1621, 2528
BceAI	ACGGC	2 cut(s)	105, 466
BciT130I	CCWGG	2 cut(s)	1292, 1585
BciVI	GTATCC	1 cut(s)	1052
BclI	TGATCA	3 cut(s)	126, 738, 1662
BcnI	CCSGG	1 cut(s)	1519
BcoDI	GTCTC	4 cut(s)	351, 704, 915, 1466
BfaI	CTAG	7 cut(s)	744, 1155, 1382, 1440, 1458, 1695, 2166
BfrI	CTTAAG	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	2150
BfuI	GTATCC	1 cut(s)	1052
Bme1390I	CCNGG	3 cut(s)	1292, 1519, 1585
Bme18I	GGWCC	2 cut(s)	820, 2254
BmeT110I	CYCGRG	2 cut(s)	263, 766
BmgT120I	GGNCC	4 cut(s)	184, 820, 1888, 2254
BmiI	GGNNCC	2 cut(s)	196, 1900
BmrFI	CCNGG	3 cut(s)	1292, 1519, 1585
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	8 cut(s)	670, 1005, 1247, 1291, 1354, 1387, 1939, 2181
BmtI	GCTAGC	1 cut(s)	1158
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	1894
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	5 cut(s)	215, 512, 632, 1486, 1745
BpuMI	CCSGG	1 cut(s)	1519
Bsa29I	ATCGAT	1 cut(s)	377
BsaAI	YACGTR	1 cut(s)	1063
BsaBI	GATNNNNATC	1 cut(s)	2511
BsaI	GGTCTC	1 cut(s)	915
BsaJI	CCNNGG	4 cut(s)	190, 262, 1566, 2481
BsaWI	WCCGGW	1 cut(s)	1427
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 1191, 1221
Bsc4I	CCNNNNNNNGG	3 cut(s)	772, 1434, 1855
Bse1I	ACTGG	5 cut(s)	607, 823, 1060, 2256, 2564
Bse3DI	GCAATG	3 cut(s)	1087, 1567, 2557
Bse8I	GATNNNNATC	1 cut(s)	2511
BseBI	CCWGG	2 cut(s)	1292, 1585
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	4 cut(s)	190, 262, 1566, 2481
BseGI	GGATG	5 cut(s)	625, 685, 721, 1020, 2539
BseJI	GATNNNNATC	1 cut(s)	2511
BseLI	CCNNNNNNNGG	3 cut(s)	772, 1434, 1855
BseMI	GCAATG	3 cut(s)	1087, 1567, 2557
BseMII	CTCAG	4 cut(s)	305, 699, 1791, 1908
BseNI	ACTGG	5 cut(s)	607, 823, 1060, 2256, 2564
BseRI	GAGGAG	4 cut(s)	215, 218, 509, 2342
BseXI	GCAGC	3 cut(s)	16, 1462, 1591
BseYI	CCCAGC	1 cut(s)	1730
BsgI	GTGCAG	2 cut(s)	1085, 1509
Bsh1236I	CGCG	4 cut(s)	192, 373, 443, 1306
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	4 cut(s)	147, 185, 1290, 1890
BshVI	ATCGAT	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	377
BsiHKCI	CYCGRG	2 cut(s)	263, 766
BsiSI	CCGG	3 cut(s)	818, 1428, 1519
BslFI	GGGAC	6 cut(s)	280, 683, 1719, 1832, 2276, 2551
BslI	CCNNNNNNNGG	3 cut(s)	772, 1434, 1855
BsmAI	GTCTC	4 cut(s)	351, 704, 915, 1466
BsmBI	CGTCTC	1 cut(s)	704
BsmFI	GGGAC	6 cut(s)	280, 683, 1719, 1832, 2276, 2551
BsmI	GAATGC	2 cut(s)	892, 1158
BsnI	GGCC	4 cut(s)	147, 185, 1290, 1890
Bso31I	GGTCTC	1 cut(s)	915
BsoBI	CYCGRG	2 cut(s)	263, 766
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1407I	TGTACA	1 cut(s)	854
Bsp68I	TCGCGA	1 cut(s)	443
BspANI	GGCC	4 cut(s)	147, 185, 1290, 1890
BspCNI	CTCAG	4 cut(s)	304, 700, 1792, 1907
BspDI	ATCGAT	1 cut(s)	377
BspFNI	CGCG	4 cut(s)	192, 373, 443, 1306
BspHI	TCATGA	1 cut(s)	2314
BspLI	GGNNCC	2 cut(s)	196, 1900
BspMI	ACCTGC	1 cut(s)	2150
BspOI	GCTAGC	1 cut(s)	1158
BspPI	GGATC	3 cut(s)	933, 1893, 1906
BspT104I	TTCGAA	1 cut(s)	548
BspTI	CTTAAG	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	915
BsrBI	CCGCTC	2 cut(s)	246, 1893
BsrDI	GCAATG	3 cut(s)	1087, 1567, 2557
BsrGI	TGTACA	1 cut(s)	854
BsrI	ACTGG	5 cut(s)	607, 823, 1060, 2256, 2564
BssECI	CCNNGG	4 cut(s)	190, 262, 1566, 2481
BssSI	CACGAG	1 cut(s)	1117
BssT1I	CCWWGG	1 cut(s)	1566
Bst2BI	CACGAG	1 cut(s)	1117
Bst2UI	CCWGG	2 cut(s)	1292, 1585
Bst4CI	ACNGT	3 cut(s)	909, 1710, 2360
Bst6I	CTCTTC	5 cut(s)	27, 58, 395, 2319, 2482
BstAFI	CTTAAG	1 cut(s)	673
BstAUI	TGTACA	1 cut(s)	854
BstBAI	YACGTR	1 cut(s)	1063
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	5 cut(s)	283, 1156, 1480, 1505, 1981
BstDEI	CTNAG	4 cut(s)	291, 708, 1800, 1894
BstDSI	CCRYGG	2 cut(s)	190, 2481
BstEII	GGTNACC	1 cut(s)	761
BstF5I	GGATG	5 cut(s)	625, 685, 721, 1020, 2539
BstFNI	CGCG	4 cut(s)	192, 373, 443, 1306
BstHHI	GCGC	4 cut(s)	156, 373, 754, 1306
BstMAI	GTCTC	4 cut(s)	351, 704, 915, 1466
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 287, 473, 889, 1310, 1697
BstNI	CCWGG	2 cut(s)	1292, 1585
BstNSI	RCATGY	9 cut(s)	457, 563, 958, 1276, 1779, 1872, 1983, 2018, 2544
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	3 cut(s)	1290, 1517, 1583
BstUI	CGCG	4 cut(s)	192, 373, 443, 1306
BstV1I	GCAGC	3 cut(s)	16, 1462, 1591
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	1898
BstXI	CCANNNNNNTGG	1 cut(s)	1838
BstYI	RGATCY	1 cut(s)	1898
Bsu15I	ATCGAT	1 cut(s)	377
BsuI	GTATCC	1 cut(s)	1052
BsuRI	GGCC	4 cut(s)	147, 185, 1290, 1890
BsuTUI	ATCGAT	1 cut(s)	377
BtgI	CCRYGG	2 cut(s)	190, 2481
BtgZI	GCGATG	1 cut(s)	440
BtsCI	GGATG	5 cut(s)	625, 685, 721, 1020, 2539
BtsI	GCAGTG	3 cut(s)	1227, 2379, 2454
BtsIMutI	CAGTG	6 cut(s)	1053, 1227, 2105, 2365, 2379, 2454
BtuMI	TCGCGA	1 cut(s)	443
BveI	ACCTGC	1 cut(s)	2150
Cac8I	GCNNGC	5 cut(s)	283, 1156, 1480, 1505, 1981
CciI	TCATGA	1 cut(s)	2314
CfoI	GCGC	4 cut(s)	156, 373, 754, 1306
Cfr13I	GGNCC	4 cut(s)	184, 820, 1888, 2254
Cfr42I	CCGCGG	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	377
CseI	GACGC	2 cut(s)	516, 1610
Csp6I	GTAC	4 cut(s)	855, 905, 2249, 2309
CviQI	GTAC	4 cut(s)	855, 905, 2249, 2309
DdeI	CTNAG	4 cut(s)	291, 708, 1800, 1894
DraI	TTTAAA	1 cut(s)	364
EaeI	YGGCCR	2 cut(s)	145, 1288
Eam1104I	CTCTTC	5 cut(s)	27, 58, 395, 2319, 2482
EarI	CTCTTC	5 cut(s)	27, 58, 395, 2319, 2482
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	1566
Eco31I	GGTCTC	1 cut(s)	915
Eco32I	GATATC	1 cut(s)	1344
Eco47I	GGWCC	2 cut(s)	820, 2254
Eco57I	CTGAAG	2 cut(s)	1184, 2336
Eco88I	CYCGRG	2 cut(s)	263, 766
Eco91I	GGTNACC	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	2 cut(s)	550, 1258
EcoRII	CCWGG	2 cut(s)	1290, 1583
EcoRV	GATATC	1 cut(s)	1344
EcoT14I	CCWWGG	1 cut(s)	1566
EcoT22I	ATGCAT	3 cut(s)	685, 1369, 1870
ErhI	CCWWGG	1 cut(s)	1566
Esp3I	CGTCTC	1 cut(s)	704
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	6 cut(s)	280, 683, 1719, 1832, 2276, 2551
FauI	CCCGC	4 cut(s)	34, 257, 290, 1780
FauNDI	CATATG	1 cut(s)	1369
FbaI	TGATCA	3 cut(s)	126, 738, 1662
FokI	GGATG	5 cut(s)	632, 692, 728, 1027, 2546
FspBI	CTAG	7 cut(s)	744, 1155, 1382, 1440, 1458, 1695, 2166
FspI	TGCGCA	2 cut(s)	155, 753
GlaI	GCGC	4 cut(s)	155, 372, 753, 1305
GsaI	CCCAGC	1 cut(s)	1734
HaeIII	GGCC	4 cut(s)	147, 185, 1290, 1890
HapII	CCGG	3 cut(s)	818, 1428, 1519
HgaI	GACGC	2 cut(s)	516, 1610
HhaI	GCGC	4 cut(s)	156, 373, 754, 1306
Hin6I	GCGC	4 cut(s)	154, 371, 752, 1304
HinP1I	GCGC	4 cut(s)	154, 371, 752, 1304
HindIII	AAGCTT	2 cut(s)	1311, 2142
HinfI	GANTC	9 cut(s)	7, 311, 614, 992, 1138, 1541, 2051, 2428, 2507
HpaII	CCGG	3 cut(s)	818, 1428, 1519
HphI	GGTGA	7 cut(s)	121, 604, 733, 773, 1125, 2006, 2191
Hpy166II	GTNNAC	4 cut(s)	277, 828, 952, 1210
Hpy188I	TCNGA	8 cut(s)	83, 126, 556, 619, 1014, 1164, 1186, 1801
Hpy8I	GTNNAC	4 cut(s)	277, 828, 952, 1210
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	5 cut(s)	568, 652, 994, 1159, 1813
HpyCH4III	ACNGT	3 cut(s)	909, 1710, 2360
HpyCH4IV	ACGT	3 cut(s)	1062, 1148, 2289
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 287, 473, 889, 1310, 1697
HpyF3I	CTNAG	4 cut(s)	291, 708, 1800, 1894
HpySE526I	ACGT	3 cut(s)	1062, 1148, 2289
HspAI	GCGC	4 cut(s)	154, 371, 752, 1304
Ksp22I	TGATCA	3 cut(s)	126, 738, 1662
KspI	CCGCGG	1 cut(s)	193
LmnI	GCTCC	7 cut(s)	200, 251, 556, 729, 1472, 1976, 2329
Lsp1109I	GCAGC	3 cut(s)	16, 1462, 1591
LweI	GCATC	8 cut(s)	670, 1005, 1247, 1291, 1354, 1387, 1939, 2181
MaeI	CTAG	7 cut(s)	744, 1155, 1382, 1440, 1458, 1695, 2166
MaeII	ACGT	3 cut(s)	1062, 1148, 2289
MaeIII	GTNAC	5 cut(s)	721, 761, 1994, 2285, 2450
MbiI	CCGCTC	2 cut(s)	246, 1893
MfeI	CAATTG	1 cut(s)	2258
MflI	RGATCY	1 cut(s)	1898
MlsI	TGGCCA	1 cut(s)	1290
MluNI	TGGCCA	1 cut(s)	1290
MlyI	GAGTC	2 cut(s)	623, 1550
MmeI	TCCRAC	4 cut(s)	106, 441, 597, 2188
Mox20I	TGGCCA	1 cut(s)	1290
Mph1103I	ATGCAT	3 cut(s)	685, 1369, 1870
MroXI	GAANNNNTTC	1 cut(s)	1142
MscI	TGGCCA	1 cut(s)	1290
MslI	CAYNNNNRTG	1 cut(s)	1686
Msp20I	TGGCCA	1 cut(s)	1290
MspA1I	CMGCKG	3 cut(s)	29, 192, 2057
MspCI	CTTAAG	1 cut(s)	673
MspI	CCGG	3 cut(s)	818, 1428, 1519
MspR9I	CCNGG	3 cut(s)	1292, 1519, 1585
MunI	CAATTG	1 cut(s)	2258
Mva1269I	GAATGC	2 cut(s)	892, 1158
MvaI	CCWGG	2 cut(s)	1292, 1585
MvnI	CGCG	4 cut(s)	192, 373, 443, 1306
MwoI	GCNNNNNNNGC	6 cut(s)	153, 287, 473, 889, 1310, 1697
NciI	CCSGG	1 cut(s)	1519
NdeI	CATATG	1 cut(s)	1369
NheI	GCTAGC	1 cut(s)	1154
NlaIV	GGNNCC	2 cut(s)	196, 1900
NmeAIII	GCCGAG	1 cut(s)	2009
NmuCI	GTSAC	4 cut(s)	721, 761, 1994, 2450
NruI	TCGCGA	1 cut(s)	443
NsbI	TGCGCA	2 cut(s)	155, 753
NsiI	ATGCAT	3 cut(s)	685, 1369, 1870
NspI	RCATGY	9 cut(s)	457, 563, 958, 1276, 1779, 1872, 1983, 2018, 2544
NspV	TTCGAA	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	1983
PagI	TCATGA	1 cut(s)	2314
PciI	ACATGT	2 cut(s)	954, 2540
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 440
PctI	GAATGC	2 cut(s)	892, 1158
PdmI	GAANNNNTTC	1 cut(s)	1142
PfeI	GAWTC	7 cut(s)	7, 311, 992, 1138, 2051, 2428, 2507
PfoI	TCCNGGA	1 cut(s)	1517
Ple19I	CGATCG	1 cut(s)	377
PleI	GAGTC	2 cut(s)	622, 1549
PpsI	GAGTC	2 cut(s)	622, 1549
Ppu21I	YACGTR	1 cut(s)	1063
PscI	ACATGT	2 cut(s)	954, 2540
PsiI	TTATAA	3 cut(s)	1350, 1526, 2390
Psp6I	CCWGG	2 cut(s)	1290, 1583
PspEI	GGTNACC	1 cut(s)	761
PspFI	CCCAGC	1 cut(s)	1730
PspGI	CCWGG	2 cut(s)	1290, 1583
PspN4I	GGNNCC	2 cut(s)	196, 1900
PspPI	GGNCC	4 cut(s)	184, 820, 1888, 2254
PsuI	RGATCY	1 cut(s)	1898
PvuI	CGATCG	1 cut(s)	377
RruI	TCGCGA	1 cut(s)	443
RsaI	GTAC	4 cut(s)	856, 906, 2250, 2310
RsaNI	GTAC	4 cut(s)	855, 905, 2249, 2309
RseI	CAYNNNNRTG	1 cut(s)	1686
SacII	CCGCGG	1 cut(s)	193
Sau96I	GGNCC	4 cut(s)	184, 820, 1888, 2254
SchI	GAGTC	2 cut(s)	623, 1550
ScrFI	CCNGG	3 cut(s)	1292, 1519, 1585
SfaNI	GCATC	8 cut(s)	670, 1005, 1247, 1291, 1354, 1387, 1939, 2181
Sfr303I	CCGCGG	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	548
SgrBI	CCGCGG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	820, 2254
SmiMI	CAYNNNNRTG	1 cut(s)	1686
SmlI	CTYRAG	6 cut(s)	230, 491, 611, 673, 1465, 1724
SmoI	CTYRAG	6 cut(s)	230, 491, 611, 673, 1465, 1724
SphI	GCATGC	1 cut(s)	1983
SspI	AATATT	1 cut(s)	2342
SspMI	CTAG	7 cut(s)	744, 1155, 1382, 1440, 1458, 1695, 2166
StyD4I	CCNGG	3 cut(s)	1290, 1517, 1583
StyI	CCWWGG	1 cut(s)	1566
TaaI	ACNGT	3 cut(s)	909, 1710, 2360
TaiI	ACGT	3 cut(s)	1065, 1151, 2292
TaqI	TCGA	9 cut(s)	174, 303, 347, 377, 548, 983, 995, 2399, 2405
TatI	WGTACW	3 cut(s)	854, 2248, 2308
TauI	GCSGC	8 cut(s)	35, 195, 476, 886, 1694, 1893, 2021, 2060
TfiI	GAWTC	7 cut(s)	7, 311, 992, 1138, 2051, 2428, 2507
TscAI	CASTG	6 cut(s)	1060, 1227, 2105, 2365, 2379, 2461
TseFI	GTSAC	4 cut(s)	721, 761, 1994, 2450
TseI	GCWGC	3 cut(s)	29, 1475, 1604
Tsp45I	GTSAC	4 cut(s)	721, 761, 1994, 2450
TspDTI	ATGAA	4 cut(s)	1428, 2147, 2303, 2510
TspGWI	ACGGA	2 cut(s)	728, 2423
TspRI	CASTG	6 cut(s)	1060, 1227, 2105, 2365, 2379, 2461
Vha464I	CTTAAG	1 cut(s)	673
VpaK11BI	GGWCC	2 cut(s)	820, 2254
XapI	RAATTY	5 cut(s)	38, 550, 1258, 1336, 2077
XbaI	TCTAGA	1 cut(s)	1381
XceI	RCATGY	9 cut(s)	457, 563, 958, 1276, 1779, 1872, 1983, 2018, 2544
XmnI	GAANNNNTTC	1 cut(s)	1142
XspI	CTAG	7 cut(s)	744, 1155, 1382, 1440, 1458, 1695, 2166
Zsp2I	ATGCAT	3 cut(s)	685, 1369, 1870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.