Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Forward (+)

63866568 .. 63867834

Gene Structure 1267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0507100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAACCTCTGCTATCCAGCAATCCGCCTTTGCCGGCCAGACTGCTTTGAAGCCATCGAATGAGCTCGTCCGAAAGATTGGCGGCCTTGGTGGTGGCCGTATCTCCATGAGGCGCACTATCAAAAGTGCCCCAGAAAGCATATGGTACGGTCCAGACCGCCCAAAATACTTGGGACCATTCTCCGAGCAAACTCCATCCTACTTGACCGGAGAATTCCCCGGTGACTACGGATGGGACACTGCTGGGCTATCCGCGGACCCCGAAACCTTTGCTAAGAACCGTGAGCTCGAGGTGATCCACTGCCGATGGGCCATGCTTGGTGCATTGGGCTGCGTCTTCCCAGAAGTCTTGTCCAAGAACGGTGTCAAGTTCGGCGAGGCTGTTTGGTTCAAGGCCGGGTCTCAAATCTTCTCCGAGGGTGGCTTGGACTACCTCGGCAACCCAAACCTCGTCCACGCCCAGAGCATCCTGGCAATCTGGGCCGTCCAGGTTGTCCTCATGGGCTTCATTGAGGGATACAGAATTGGTGGAGGCCCACTTGGTGAGGGTCTTGACCCACTTTACCCAGGAGGTGCCTTTGACCCACTTGGATTGGCTGATGACCCAGAAGCCTTTGCTGAGCTTAAGGTGAAGGAAATCAAGAATGGAAGACTGGCAATGACCTCCATGTTTGGTTTCTTTGTTCAGGCAATTGTTACCGGAAAGGGGCCAATTGAGAACCTCTATGACCACGTTGCTGATCCCGTGGCCAACAATGCATGGGCATACGCTACCAACTTCGTCCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

265

Amino Acids

28.45

Weight (kDa)

5.31

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	66 - 232	7.1e-52	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	575
AccII	CGCG	1 cut(s)	257
AciI	CCGC	5 cut(s)	27, 84, 160, 255, 257
AclWI	GGATC	2 cut(s)	292, 737
AcoI	YGGCCR	3 cut(s)	37, 97, 750
AcsI	RAATTY	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	708
AflII	CTTAAG	1 cut(s)	626
AgsI	TTSAA	2 cut(s)	52, 394
AjnI	CCWGG	3 cut(s)	471, 489, 568
AluBI	AGCT	3 cut(s)	67, 289, 625
AluI	AGCT	3 cut(s)	67, 289, 625
Alw21I	GWGCWC	2 cut(s)	69, 291
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	292, 737
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	9 cut(s)	37, 85, 97, 312, 396, 483, 535, 710, 750
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	7 cut(s)	152, 176, 259, 312, 483, 536, 710
AsuC2I	CCSGG	3 cut(s)	222, 400, 789
AsuHPI	GGTGA	4 cut(s)	236, 307, 557, 643
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	152, 176, 259
BaeGI	GKGCMC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	2 cut(s)	69, 291
BbsI	GAAGAC	2 cut(s)	331, 658
Bbv12I	GWGCWC	2 cut(s)	69, 291
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	4 cut(s)	64, 205, 228, 303
BceAI	ACGGC	2 cut(s)	84, 470
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	3 cut(s)	473, 491, 570
BciVI	GTATCC	1 cut(s)	512
BcnI	CCSGG	3 cut(s)	222, 400, 789
BcoDI	GTCTC	1 cut(s)	408
BfrI	CTTAAG	1 cut(s)	626
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	2 cut(s)	85, 334
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	2 cut(s)	86, 335
Bme1390I	CCNGG	6 cut(s)	222, 400, 473, 491, 570, 789
Bme18I	GGWCC	3 cut(s)	152, 176, 259
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	7 cut(s)	152, 176, 259, 312, 483, 536, 710
BmiI	GGNNCC	4 cut(s)	177, 261, 577, 711
BmrFI	CCNGG	6 cut(s)	222, 400, 473, 491, 570, 789
BmsI	GCATC	1 cut(s)	477
BpiI	GAAGAC	2 cut(s)	331, 658
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuMI	CCSGG	3 cut(s)	222, 400, 789
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	8 cut(s)	88, 220, 255, 417, 436, 568, 747, 787
BsaWI	WCCGGW	2 cut(s)	209, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	708
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	3 cut(s)	473, 491, 570
BseDI	CCNNGG	8 cut(s)	88, 220, 255, 417, 436, 568, 747, 787
BseGI	GGATG	3 cut(s)	197, 239, 468
BseLI	CCNNNNNNNGG	1 cut(s)	708
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	660
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	9 cut(s)	39, 87, 99, 314, 398, 485, 537, 712, 752
BshNI	GGYRCC	1 cut(s)	575
BsiHKAI	GWGCWC	2 cut(s)	69, 291
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	6 cut(s)	36, 210, 222, 399, 702, 789
BslFI	GGGAC	3 cut(s)	189, 251, 770
BslI	CCNNNNNNNGG	1 cut(s)	708
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	3 cut(s)	189, 251, 770
BsnI	GGCC	9 cut(s)	39, 87, 99, 314, 398, 485, 537, 712, 752
Bso31I	GGTCTC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	69, 133, 291
Bsp143I	GATC	2 cut(s)	297, 742
Bsp1720I	GCTNAGC	1 cut(s)	621
BspACI	CCGC	5 cut(s)	27, 84, 160, 255, 257
BspANI	GGCC	9 cut(s)	39, 87, 99, 314, 398, 485, 537, 712, 752
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	4 cut(s)	177, 261, 577, 711
BspPI	GGATC	2 cut(s)	292, 737
BspT107I	GGYRCC	1 cut(s)	575
BspTI	CTTAAG	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	666
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	8 cut(s)	88, 220, 255, 417, 436, 568, 747, 787
BssMI	GATC	2 cut(s)	297, 742
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	3 cut(s)	473, 491, 570
Bst4CI	ACNGT	3 cut(s)	152, 284, 365
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	276, 621
BstDSI	CCRYGG	2 cut(s)	255, 747
BstF5I	GGATG	3 cut(s)	197, 239, 468
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	300, 745
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	2 cut(s)	297, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 482, 758
BstNI	CCWGG	3 cut(s)	473, 491, 570
BstSCI	CCNGG	6 cut(s)	220, 398, 471, 489, 568, 787
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	2 cut(s)	331, 658
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	9 cut(s)	39, 87, 99, 314, 398, 485, 537, 712, 752
BtgI	CCRYGG	2 cut(s)	255, 747
BtsCI	GGATG	3 cut(s)	197, 239, 468
BtsI	GCAGTG	2 cut(s)	240, 301
BtsIMutI	CAGTG	2 cut(s)	240, 301
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	7 cut(s)	152, 176, 259, 312, 483, 536, 710
Cfr42I	CCGCGG	1 cut(s)	258
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	5 cut(s)	109, 316, 502, 670, 762
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	276, 621
DpnI	GATC	2 cut(s)	299, 744
DpnII	GATC	2 cut(s)	297, 742
DraIII	CACNNNGTG	1 cut(s)	545
EaeI	YGGCCR	3 cut(s)	37, 97, 750
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	2 cut(s)	67, 289
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	69, 291
Eco31I	GGTCTC	1 cut(s)	408
Eco47I	GGWCC	3 cut(s)	152, 176, 259
Eco53kI	GAGCTC	2 cut(s)	67, 289
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	2 cut(s)	67, 289
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	3 cut(s)	471, 489, 568
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	2 cut(s)	69, 291
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	5 cut(s)	112, 319, 505, 673, 765
FaiI	YATR	9 cut(s)	110, 143, 145, 317, 503, 671, 729, 763, 769
FaqI	GGGAC	3 cut(s)	189, 251, 770
FatI	CATG	5 cut(s)	108, 315, 501, 669, 761
FauNDI	CATATG	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	85, 334
FokI	GGATG	3 cut(s)	184, 246, 455
FriOI	GRGCYC	2 cut(s)	69, 291
Fsp4HI	GCNGC	2 cut(s)	85, 334
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	2 cut(s)	85, 334
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	9 cut(s)	39, 87, 99, 314, 398, 485, 537, 712, 752
HapII	CCGG	6 cut(s)	36, 210, 222, 399, 702, 789
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	5 cut(s)	112, 319, 505, 673, 765
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HpaII	CCGG	6 cut(s)	36, 210, 222, 399, 702, 789
HphI	GGTGA	4 cut(s)	236, 307, 557, 643
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	3 cut(s)	74, 187, 418
Hpy188III	TCNNGA	3 cut(s)	155, 554, 643
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	3 cut(s)	152, 284, 365
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	2 cut(s)	326, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 482, 758
HpyF3I	CTNAG	2 cut(s)	276, 621
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	5 cut(s)	112, 319, 505, 673, 765
HspAI	GCGC	1 cut(s)	115
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	297, 742
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	477
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	2 cut(s)	224, 697
MalI	GATC	2 cut(s)	299, 744
MboI	GATC	2 cut(s)	297, 742
MboII	GAAGA	3 cut(s)	331, 403, 663
MfeI	CAATTG	2 cut(s)	693, 714
MhlI	GDGCHC	3 cut(s)	69, 133, 291
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	4 cut(s)	215, 525, 693, 714
MluNI	TGGCCA	1 cut(s)	752
Mox20I	TGGCCA	1 cut(s)	752
Mph1103I	ATGCAT	1 cut(s)	763
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	752
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	6 cut(s)	36, 210, 222, 399, 702, 789
MspR9I	CCNGG	6 cut(s)	222, 400, 473, 491, 570, 789
MunI	CAATTG	2 cut(s)	693, 714
MvaI	CCWGG	3 cut(s)	473, 491, 570
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	11, 482, 758
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	3 cut(s)	222, 400, 789
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	2 cut(s)	297, 742
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	5 cut(s)	112, 319, 505, 673, 765
NlaIV	GGNNCC	4 cut(s)	177, 261, 577, 711
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	763
PaeR7I	CTCGAG	1 cut(s)	290
PdiI	GCCGGC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	86, 335
Psp124BI	GAGCTC	2 cut(s)	69, 291
Psp6I	CCWGG	3 cut(s)	471, 489, 568
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	3 cut(s)	471, 489, 568
PspN4I	GGNNCC	4 cut(s)	177, 261, 577, 711
PspPI	GGNCC	7 cut(s)	152, 176, 259, 312, 483, 536, 710
PspXI	VCTCGAGB	1 cut(s)	290
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	2 cut(s)	69, 291
SacII	CCGCGG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	2 cut(s)	85, 334
Sau3AI	GATC	2 cut(s)	297, 742
Sau96I	GGNCC	7 cut(s)	152, 176, 259, 312, 483, 536, 710
ScrFI	CCNGG	6 cut(s)	222, 400, 473, 491, 570, 789
SduI	GDGCHC	3 cut(s)	69, 133, 291
SfaNI	GCATC	1 cut(s)	477
Sfr274I	CTCGAG	1 cut(s)	290
Sfr303I	CCGCGG	1 cut(s)	258
SgrBI	CCGCGG	1 cut(s)	258
SinI	GGWCC	3 cut(s)	152, 176, 259
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	290, 626
SmoI	CTYRAG	2 cut(s)	290, 626
Sse9I	AATT	4 cut(s)	215, 525, 693, 714
SsiI	CCGC	5 cut(s)	27, 84, 160, 255, 257
SstI	GAGCTC	2 cut(s)	69, 291
StyD4I	CCNGG	6 cut(s)	220, 398, 471, 489, 568, 787
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	152, 284, 365
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	2 cut(s)	59, 291
TasI	AATT	4 cut(s)	215, 525, 693, 714
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	2 cut(s)	247, 308
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	499
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	247, 308
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	3 cut(s)	152, 176, 259
XapI	RAATTY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.