Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Reverse (-)

414040 .. 414435

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCAGCAATTGCATTCGTGGGGTTGGCTTTAGGTCATTATGTCGGGTGTTGTTTGGTGGACATGTATTCCAAGTGTACGGCTGATGGATTGATGAATGATGCGAGGAAGGTATTTGATAGGATGCCAAACAATAATGTTGCATCATGGACTGCAATTATGAATGGATATGTGCAGAGAGGAAGGGGTGATGAGGAAGCCATCAAACACTTTGTTGAAATGATGTCAGGTCTTGTTCCGCCAAACCATTTCACCTTTTCTAGCATTCTGAAGACTTGTGCAAATCTTTTGGATCTGTGTACGGCAGTGAAATCAGGTCTCGCTTCCATTAACTGTATGGGAAATTCACTTATTAGCATGTACTCAAAGGGCTGGTTTGGTATTGCTGTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

132

Amino Acids

14.18

Weight (kDa)

7.6

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	46 - 95	3.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	3 cut(s)	79, 301, 362
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	200, 244
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	80, 209
BceAI	ACGGC	2 cut(s)	96, 318
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	261
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmsI	GCATC	3 cut(s)	91, 114, 152
BpiI	GAAGAC	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	323
BseGI	GGATG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	323
BsmI	GAATGC	2 cut(s)	14, 264
Bso31I	GGTCTC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	323
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	67, 361
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	78, 300, 361
CviAII	CATG	3 cut(s)	64, 147, 358
CviJI	RGCY	4 cut(s)	29, 83, 200, 372
CviKI_1	RGCY	4 cut(s)	29, 83, 200, 372
CviQI	GTAC	3 cut(s)	78, 300, 361
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EciI	GGCGGA	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	290
FaeI	CATG	3 cut(s)	67, 150, 361
FaiI	YATR	7 cut(s)	42, 65, 148, 161, 171, 338, 359
FatI	CATG	3 cut(s)	63, 146, 357
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	67, 150, 361
HphI	GGTGA	2 cut(s)	200, 244
Hpy166II	GTNNAC	3 cut(s)	61, 78, 300
Hpy188I	TCNGA	1 cut(s)	270
Hpy8I	GTNNAC	3 cut(s)	61, 78, 300
HpyAV	CCTTC	2 cut(s)	103, 177
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	14, 143, 155, 175, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	67, 150, 361
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	213, 300, 358
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	91, 114, 152
MaeI	CTAG	1 cut(s)	261
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	283
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	3 cut(s)	9, 156, 343
MnlI	CCTC	3 cut(s)	99, 173, 187
MseI	TTAA	1 cut(s)	330
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	2 cut(s)	14, 264
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	67, 150, 361
NspI	RCATGY	2 cut(s)	67, 361
PciI	ACATGT	1 cut(s)	63
PctI	GAATGC	2 cut(s)	14, 264
PkrI	GCNGC	1 cut(s)	7
PscI	ACATGT	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	3 cut(s)	79, 301, 362
RsaNI	GTAC	3 cut(s)	78, 300, 361
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	292
SetI	ASST	5 cut(s)	37, 114, 232, 257, 319
SfaNI	GCATC	3 cut(s)	91, 114, 152
Sse9I	AATT	3 cut(s)	9, 156, 343
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	335
TasI	AATT	3 cut(s)	9, 156, 343
TatI	WGTACW	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	110, 176
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	2 cut(s)	67, 361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.