Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Forward (+)

79395441 .. 79398229

Gene Structure 2789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGCTGATTCCAAGCCTCTCGCTTCCTGCTCCCGCCAAATTCCCTCCGCCCTCTTCTTCTTCTTCTTCTTTTTCTCTCCGACACCACCAAGACCCAAACTTTGAGCCTCTCCACCGCCGTCTGATCACCCAAATCAATGTCGGCCATCTCCGCAACGCAATCTCCACCCTCGATCTCATGGCCCTCCGCGGCTCCCACCCTGACCTCCCCACCTACTCCCTCCTCCTCAAGTCCTGCCTCCGCTCCCGCAACTTCCACCTCGGGAAGCTCGTCCACGCGCGGCTGACTCAGTCCCAACTCGACCCCGACTCTGTCATTCTCAACTCGTTGATTAGCCTCTACTCGAAATCGGGAGACTTTGAAAAGGCGCGATCGATCTTTCAAACTATGGGAGAGAAGAGAAATTTGGTGTCTTGGAGTGCGATGGTGTCGTGTTTCGCGAACAACGGCATGTCGTTGGAGGCGGTTTCGGCGTTTGTTGATATGCTTGAGGAGGGGGTTTACCCGAACGAGTTTTGCTTTGCGTCGGTTGTTCGGGCGTGTTCGAATTCGGAGCATGTTGGGATTGGGAAGGTGGTTTTCGGGTCGGTGATTAAAACTGGGTATCTTGAGTCTGACGTGTGTGTTGGGTCTTCGTTGATTGATATGTTTGCTAAAGGTGGTGGGGACCTAAGGGATGCATATAAGGTGTTTGAGAAAATGGCTGAGACGGATGTGGTGACTTGGAGCTTGATGATCACTAGGTTTGCGCAGATGGGTGATCCGAGAAAGGCGGTTGAGCTGTATATGGATATGTTGTCAAATGGGCTAATGCCGGACCAGTTTACGATAAGTGGTGTTGTATCGGCTTGTACAAAGTTGGGGTCGTTGGCGTTGGGGCAGCAGTTGCATTCGTGGGCTGTACGGTCTCGGTTGGGTTTGGATCACTGCGTTGGGTGTTGTTTGGTGGACATGTATGCCAAGTGTGGAGGTGGTGGGTCGATGAGTGATTCGAGGAAGGTGTTTGATCGGATGCGAGAGCATAGTGTTATGTCTTGGACTGCTGTTATCACTGGATATGTGCAGAGTGGAGGGGGCGATGAGGAAGCTGTCAAGCTATTTGTTGAAATGATCTCGTGTGGTCATGTTTCGCCGAATCATTTCACGTTTGCTAGCGTTCTGAAGGCTTGTGCAAACCTTTCTGATCTGCGTAAGGGAGAGCAAGTTCACTCCCTTGCTGTGAAACTTGGTCTTGCATCGGTTAATTGTGTGGGGAATTCACTTATTAGCATGTATGCAAAGTCTGGCCAGGTGGAAGATGCGCGGAAAGCTTTTGATCTTCTGTATGAGAAGAATTTGATATCTTATAATACAATCGTTGATGCATATGCCAAGCATCTAGACACAGAAGAAGCCTTTGGACTTCTCCATGAAGTTGAGAATACCGGACTTGGGGCTAGTGCTTTCACATTTGCTAGTCTCTTGAGTGGAGCTGCCAGCCTTTGTGCAGTTGATAAGGGCGAGCAAATACATTCCCGGATTATAAAATCAGGATTTGAGTCAAACCAAAGCATTTGCAATGCCTTGGTTTCTATGTATTCCAGGTGTGGAAACATAGACGCTGCTTTCCTAGTGTTTAATGAGATGGAAGATTGGAATGTTATATCATGGACTTCAATGATCACAGGTTTTGCAAAACATGGTTATGCGGCTAGAGCTGTGGGACTGTTTAACCAAATGCTTGAGGCTGGGTTAAAACCGAATGAGATCACATATATTGCTGTTTTATCAGCATGTAGCCATGCCGGATTGATTTCTGAGGGGTGGAAACACTTGAAGGAAATGCACCAACAACATGGTCTTGTCCCAAAAATGGAACACTATGCATGTATGGTTGATTTATTGGGCCGCTCAGGATCCCTTGTAGAAGCCATTGAGTTTATTAACTCAATGCCTTTTGAAGCTGATGCACTAATCTGGCGAACATTTCTTGGAGCATGCCGAGTGCATGGTGACATTGAGCTTGGGAAACATGCAGCAAAGATGATTATCAAGCAGAGCCCACATGATTCAGCGGCATATAGCTTACTATCAAATTTGTATGCTTCCACGGGTCAGTGGGAAGAAGTAGCAAATATAAGAAAAAATATGAAAGAGAAAGCTTTGGTCAAAGAAGCAGGTTCTAGCTGGATAGAGGTGAAGAATAAGATGCACAAGTTCCATGTTGGAGATACTTCGCACCCAAAAGCACGGGAGATTTATGATGAACTGGACCAATTGGGTTCAAAGATAAAGAAATTGGGTTATGTCCCCGATACAGATTTTGTACTTCATGAGGTGGAAGAGGAGCAAAAGGAATATTATTTGTTTCAGCACAGTGAGAAATTAGCAGTGGCATTTGGTCTTATAAGCACATCGAAATCGAAACCCATAAGAGTATTCAAGAATCTCCGTGTTTGTGGAGATTGTCACACTGCACTTAAGTATATTTCAAAAGCCACGGGAAGAGAAATAGTGGTAAGGGATTCAAATCGGTTTCATCAGTTCAAGGATGGGACATGTTCTTGCAATGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

853

Amino Acids

94.08

Weight (kDa)

6.71

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	135 - 182	1.9e-06	PPR repeat family
PPR_2	PF13041	238 - 285	1.1e-09	PPR repeat family
PPR	PF01535	240 - 270	9.8e-06	PPR repeat
PPR_2	PF13041	342 - 392	5.7e-07	PPR repeat family
PPR_2	PF13041	445 - 491	1.8e-06	PPR repeat family
PPR_long	PF17177	452 - 596	3.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	546 - 593	1.6e-11	PPR repeat family
PPR	PF01535	548 - 578	2e-06	PPR repeat
E_motif	PF20431	663 - 725	1.2e-15	E motif
Eplus_motif	PF20430	731 - 753	8.7e-07	E+ motif
DYW_deaminase	PF14432	761 - 853	2.3e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1347, 1523, 2387
Acc16I	TGCGCA	1 cut(s)	750
Acc36I	ACCTGC	1 cut(s)	2147
AccBSI	CCGCTC	2 cut(s)	243, 1890
AccII	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1303
AclWI	GGATC	4 cut(s)	755, 930, 1890, 1903
AcoI	YGGCCR	2 cut(s)	142, 1285
AcsI	RAATTY	6 cut(s)	38, 403, 547, 1255, 1333, 2074
AcuI	CTGAAG	1 cut(s)	1181
AfaI	GTAC	3 cut(s)	853, 903, 2307
AfiI	CCNNNNNNNGG	2 cut(s)	1431, 1852
AflII	CTTAAG	1 cut(s)	2459
AflIII	ACRYGT	3 cut(s)	618, 951, 2537
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	2 cut(s)	1287, 1580
AjuI	GAANNNNNNNTTGG	4 cut(s)	389, 421, 1380, 1412
AloI	GAACNNNNNNTCC	2 cut(s)	1188, 1220
Alw26I	GTCTC	4 cut(s)	348, 701, 912, 1463
AlwI	GGATC	4 cut(s)	755, 930, 1890, 1903
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	142, 180, 1285, 1885
ApeKI	GCWGC	4 cut(s)	880, 1472, 1601, 2015
ApoI	RAATTY	6 cut(s)	38, 403, 547, 1255, 1333, 2074
ArsI	GACNNNNNNTTYG	4 cut(s)	83, 115, 848, 880
Asp700I	GAANNNNTTC	1 cut(s)	1139
AspLEI	GCGC	4 cut(s)	280, 370, 751, 1303
AspS9I	GGNCC	5 cut(s)	181, 667, 817, 1885, 2251
AsuC2I	CCSGG	1 cut(s)	1516
AsuHPI	GGTGA	6 cut(s)	118, 601, 730, 770, 2003, 2188
AsuII	TTCGAA	1 cut(s)	545
AsuNHI	GCTAGC	1 cut(s)	1151
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	667, 817, 2251
AxyI	CCTNAGG	1 cut(s)	671
BalI	TGGCCA	1 cut(s)	1287
BamHI	GGATCC	1 cut(s)	1895
BanII	GRGCYC	1 cut(s)	2042
BauI	CACGAG	1 cut(s)	1114
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	892, 1459, 1588, 2027
BccI	CCATC	5 cut(s)	153, 418, 748, 1618, 2525
BceAI	ACGGC	2 cut(s)	102, 463
BciT130I	CCWGG	2 cut(s)	1289, 1582
BclI	TGATCA	3 cut(s)	123, 735, 1659
BcnI	CCSGG	1 cut(s)	1516
BcoDI	GTCTC	4 cut(s)	348, 701, 912, 1463
BfaI	CTAG	8 cut(s)	741, 1152, 1379, 1437, 1455, 1610, 1692, 2163
BfrI	CTTAAG	1 cut(s)	2459
BfuAI	ACCTGC	1 cut(s)	2147
BisI	GCNGC	9 cut(s)	190, 281, 881, 1473, 1602, 1689, 1888, 2016, 2055
BlsI	GCNGC	9 cut(s)	191, 282, 882, 1474, 1603, 1690, 1889, 2017, 2056
Bme1390I	CCNGG	3 cut(s)	1289, 1516, 1582
Bme18I	GGWCC	3 cut(s)	667, 817, 2251
BmeT110I	CYCGRG	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	5 cut(s)	181, 667, 817, 1885, 2251
BmiI	GGNNCC	3 cut(s)	193, 668, 1897
BmrFI	CCNGG	3 cut(s)	1289, 1516, 1582
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	8 cut(s)	667, 1002, 1244, 1288, 1351, 1384, 1936, 2178
BmtI	GCTAGC	1 cut(s)	1155
BmuI	ACTGGG	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	1891
Bpu14I	TTCGAA	1 cut(s)	545
BpuEI	CTTGAG	5 cut(s)	212, 509, 629, 1483, 1742
BpuMI	CCSGG	1 cut(s)	1516
Bsa29I	ATCGAT	1 cut(s)	374
BsaBI	GATNNNNATC	2 cut(s)	2027, 2508
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	5 cut(s)	187, 259, 1563, 2088, 2478
BsaWI	WCCGGW	1 cut(s)	1424
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 1188, 1218
Bsc4I	CCNNNNNNNGG	2 cut(s)	1431, 1852
Bse1I	ACTGG	5 cut(s)	604, 820, 1057, 2253, 2561
Bse21I	CCTNAGG	1 cut(s)	671
Bse3DI	GCAATG	2 cut(s)	1564, 2554
Bse8I	GATNNNNATC	2 cut(s)	2027, 2508
BseBI	CCWGG	2 cut(s)	1289, 1582
BseCI	ATCGAT	1 cut(s)	374
BseDI	CCNNGG	5 cut(s)	187, 259, 1563, 2088, 2478
BseGI	GGATG	4 cut(s)	682, 718, 1017, 2536
BseJI	GATNNNNATC	2 cut(s)	2027, 2508
BseLI	CCNNNNNNNGG	2 cut(s)	1431, 1852
BseMI	GCAATG	2 cut(s)	1564, 2554
BseMII	CTCAG	4 cut(s)	302, 696, 1788, 1905
BseNI	ACTGG	5 cut(s)	604, 820, 1057, 2253, 2561
BseRI	GAGGAG	4 cut(s)	212, 215, 506, 2339
BseXI	GCAGC	4 cut(s)	892, 1459, 1588, 2027
BseYI	CCCAGC	1 cut(s)	1727
BsgI	GTGCAG	3 cut(s)	1082, 1506, 2439
Bsh1236I	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1303
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	144, 182, 1287, 1887
BshVI	ATCGAT	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	815, 1425, 1516, 1785
BslFI	GGGAC	6 cut(s)	277, 680, 1716, 1829, 2273, 2548
BslI	CCNNNNNNNGG	2 cut(s)	1431, 1852
BsmAI	GTCTC	4 cut(s)	348, 701, 912, 1463
BsmBI	CGTCTC	1 cut(s)	701
BsmFI	GGGAC	6 cut(s)	277, 680, 1716, 1829, 2273, 2548
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	4 cut(s)	144, 182, 1287, 1887
Bso31I	GGTCTC	1 cut(s)	912
BsoBI	CYCGRG	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	2042
Bsp1407I	TGTACA	1 cut(s)	851
Bsp68I	TCGCGA	1 cut(s)	440
BspANI	GGCC	4 cut(s)	144, 182, 1287, 1887
BspCNI	CTCAG	4 cut(s)	301, 697, 1789, 1904
BspDI	ATCGAT	1 cut(s)	374
BspFNI	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1303
BspHI	TCATGA	1 cut(s)	2311
BspLI	GGNNCC	3 cut(s)	193, 668, 1897
BspMI	ACCTGC	1 cut(s)	2147
BspOI	GCTAGC	1 cut(s)	1155
BspPI	GGATC	4 cut(s)	755, 930, 1890, 1903
BspT104I	TTCGAA	1 cut(s)	545
BspTI	CTTAAG	1 cut(s)	2459
BspTNI	GGTCTC	1 cut(s)	912
BsrBI	CCGCTC	2 cut(s)	243, 1890
BsrDI	GCAATG	2 cut(s)	1564, 2554
BsrGI	TGTACA	1 cut(s)	851
BsrI	ACTGG	5 cut(s)	604, 820, 1057, 2253, 2561
BssECI	CCNNGG	5 cut(s)	187, 259, 1563, 2088, 2478
BssSI	CACGAG	1 cut(s)	1114
BssT1I	CCWWGG	1 cut(s)	1563
Bst2BI	CACGAG	1 cut(s)	1114
Bst2UI	CCWGG	2 cut(s)	1289, 1582
Bst4CI	ACNGT	3 cut(s)	906, 1707, 2357
Bst6I	CTCTTC	4 cut(s)	58, 392, 2316, 2479
BstAFI	CTTAAG	1 cut(s)	2459
BstAPI	GCANNNNNTGC	1 cut(s)	886
BstAUI	TGTACA	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	1153, 1477, 1502, 1978
BstDEI	CTNAG	5 cut(s)	288, 671, 705, 1797, 1891
BstDSI	CCRYGG	3 cut(s)	187, 2088, 2478
BstF5I	GGATG	4 cut(s)	682, 718, 1017, 2536
BstFNI	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1303
BstHHI	GCGC	4 cut(s)	280, 370, 751, 1303
BstMAI	GTCTC	4 cut(s)	348, 701, 912, 1463
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 470, 886, 1307, 1694
BstNI	CCWGG	2 cut(s)	1289, 1582
BstNSI	RCATGY	9 cut(s)	454, 560, 955, 1273, 1776, 1869, 1980, 2015, 2541
BstSCI	CCNGG	3 cut(s)	1287, 1514, 1580
BstUI	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1303
BstV1I	GCAGC	4 cut(s)	892, 1459, 1588, 2027
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	1895
BstXI	CCANNNNNNTGG	1 cut(s)	1835
BstYI	RGATCY	1 cut(s)	1895
Bsu15I	ATCGAT	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	671
BsuRI	GGCC	4 cut(s)	144, 182, 1287, 1887
BsuTUI	ATCGAT	1 cut(s)	374
BtgI	CCRYGG	3 cut(s)	187, 2088, 2478
BtgZI	GCGATG	2 cut(s)	437, 1092
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	4 cut(s)	682, 718, 1017, 2536
BtsI	GCAGTG	3 cut(s)	925, 2376, 2451
BtsIMutI	CAGTG	6 cut(s)	925, 1050, 2102, 2362, 2376, 2451
BtuMI	TCGCGA	1 cut(s)	440
BveI	ACCTGC	1 cut(s)	2147
Cac8I	GCNNGC	4 cut(s)	1153, 1477, 1502, 1978
CciI	TCATGA	1 cut(s)	2311
CfoI	GCGC	4 cut(s)	280, 370, 751, 1303
Cfr13I	GGNCC	5 cut(s)	181, 667, 817, 1885, 2251
Cfr42I	CCGCGG	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	374
CseI	GACGC	2 cut(s)	513, 1607
Csp6I	GTAC	3 cut(s)	852, 902, 2306
CviQI	GTAC	3 cut(s)	852, 902, 2306
DdeI	CTNAG	5 cut(s)	288, 671, 705, 1797, 1891
EaeI	YGGCCR	2 cut(s)	142, 1285
Eam1104I	CTCTTC	4 cut(s)	58, 392, 2316, 2479
EarI	CTCTTC	4 cut(s)	58, 392, 2316, 2479
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	1563
Eco24I	GRGCYC	1 cut(s)	2042
Eco31I	GGTCTC	1 cut(s)	912
Eco32I	GATATC	1 cut(s)	1341
Eco47I	GGWCC	3 cut(s)	667, 817, 2251
Eco57I	CTGAAG	1 cut(s)	1181
Eco81I	CCTNAGG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	667
EcoRI	GAATTC	2 cut(s)	547, 1255
EcoRII	CCWGG	2 cut(s)	1287, 1580
EcoRV	GATATC	1 cut(s)	1341
EcoT14I	CCWWGG	1 cut(s)	1563
EcoT22I	ATGCAT	3 cut(s)	682, 1366, 1867
EcoT38I	GRGCYC	1 cut(s)	2042
ErhI	CCWWGG	1 cut(s)	1563
Esp3I	CGTCTC	1 cut(s)	701
FaqI	GGGAC	6 cut(s)	277, 680, 1716, 1829, 2273, 2548
FauI	CCCGC	2 cut(s)	40, 254
FauNDI	CATATG	1 cut(s)	1366
FbaI	TGATCA	3 cut(s)	123, 735, 1659
Fnu4HI	GCNGC	9 cut(s)	190, 281, 881, 1473, 1602, 1689, 1888, 2016, 2055
FokI	GGATG	4 cut(s)	689, 725, 1024, 2543
FriOI	GRGCYC	1 cut(s)	2042
Fsp4HI	GCNGC	9 cut(s)	190, 281, 881, 1473, 1602, 1689, 1888, 2016, 2055
FspBI	CTAG	8 cut(s)	741, 1152, 1379, 1437, 1455, 1610, 1692, 2163
FspI	TGCGCA	1 cut(s)	750
GlaI	GCGC	4 cut(s)	279, 369, 750, 1302
GluI	GCNGC	9 cut(s)	190, 281, 881, 1473, 1602, 1689, 1888, 2016, 2055
GsaI	CCCAGC	1 cut(s)	1731
HaeIII	GGCC	4 cut(s)	144, 182, 1287, 1887
HapII	CCGG	4 cut(s)	815, 1425, 1516, 1785
HgaI	GACGC	2 cut(s)	513, 1607
HhaI	GCGC	4 cut(s)	280, 370, 751, 1303
Hin6I	GCGC	4 cut(s)	278, 368, 749, 1301
HinP1I	GCGC	4 cut(s)	278, 368, 749, 1301
HindIII	AAGCTT	2 cut(s)	1308, 2139
HpaII	CCGG	4 cut(s)	815, 1425, 1516, 1785
HphI	GGTGA	6 cut(s)	118, 601, 730, 770, 2003, 2188
Hpy166II	GTNNAC	5 cut(s)	274, 502, 825, 949, 1207
Hpy188I	TCNGA	9 cut(s)	80, 123, 553, 616, 765, 1011, 1161, 1183, 1798
Hpy8I	GTNNAC	5 cut(s)	274, 502, 825, 949, 1207
Hpy99I	CGWCG	1 cut(s)	529
HpyAV	CCTTC	4 cut(s)	565, 991, 1156, 1810
HpyCH4III	ACNGT	3 cut(s)	906, 1707, 2357
HpyCH4IV	ACGT	2 cut(s)	618, 1145
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 470, 886, 1307, 1694
HpyF3I	CTNAG	5 cut(s)	288, 671, 705, 1797, 1891
HpySE526I	ACGT	2 cut(s)	618, 1145
HspAI	GCGC	4 cut(s)	278, 368, 749, 1301
Ksp22I	TGATCA	3 cut(s)	123, 735, 1659
KspI	CCGCGG	1 cut(s)	190
LmnI	GCTCC	8 cut(s)	34, 197, 248, 553, 726, 1469, 1973, 2326
Lsp1109I	GCAGC	4 cut(s)	892, 1459, 1588, 2027
LweI	GCATC	8 cut(s)	667, 1002, 1244, 1288, 1351, 1384, 1936, 2178
MaeI	CTAG	8 cut(s)	741, 1152, 1379, 1437, 1455, 1610, 1692, 2163
MaeII	ACGT	2 cut(s)	618, 1145
MaeIII	GTNAC	3 cut(s)	718, 1991, 2447
MbiI	CCGCTC	2 cut(s)	243, 1890
MfeI	CAATTG	1 cut(s)	2255
MflI	RGATCY	1 cut(s)	1895
MhlI	GDGCHC	1 cut(s)	2042
MlsI	TGGCCA	1 cut(s)	1287
MluNI	TGGCCA	1 cut(s)	1287
MlyI	GAGTC	4 cut(s)	280, 302, 620, 1547
MmeI	TCCRAC	3 cut(s)	103, 438, 2185
Mox20I	TGGCCA	1 cut(s)	1287
Mph1103I	ATGCAT	3 cut(s)	682, 1366, 1867
MroXI	GAANNNNTTC	1 cut(s)	1139
MscI	TGGCCA	1 cut(s)	1287
MseI	TTAA	7 cut(s)	594, 1242, 1617, 1710, 1733, 1923, 2460
MslI	CAYNNNNRTG	1 cut(s)	1683
Msp20I	TGGCCA	1 cut(s)	1287
MspA1I	CMGCKG	2 cut(s)	189, 2054
MspCI	CTTAAG	1 cut(s)	2459
MspI	CCGG	4 cut(s)	815, 1425, 1516, 1785
MspR9I	CCNGG	3 cut(s)	1289, 1516, 1582
MunI	CAATTG	1 cut(s)	2255
Mva1269I	GAATGC	1 cut(s)	889
MvaI	CCWGG	2 cut(s)	1289, 1582
MvnI	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1303
MwoI	GCNNNNNNNGC	5 cut(s)	150, 470, 886, 1307, 1694
NciI	CCSGG	1 cut(s)	1516
NdeI	CATATG	1 cut(s)	1366
NheI	GCTAGC	1 cut(s)	1151
NlaIV	GGNNCC	3 cut(s)	193, 668, 1897
NmeAIII	GCCGAG	1 cut(s)	2006
NmuCI	GTSAC	3 cut(s)	718, 1991, 2447
NruI	TCGCGA	1 cut(s)	440
NsbI	TGCGCA	1 cut(s)	750
NsiI	ATGCAT	3 cut(s)	682, 1366, 1867
NspI	RCATGY	9 cut(s)	454, 560, 955, 1273, 1776, 1869, 1980, 2015, 2541
NspV	TTCGAA	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	1980
PagI	TCATGA	1 cut(s)	2311
PciI	ACATGT	2 cut(s)	951, 2537
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 437
PctI	GAATGC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	1139
PfeI	GAWTC	6 cut(s)	7, 989, 1135, 2048, 2425, 2504
PflFI	GACNNNGTC	2 cut(s)	289, 311
PfoI	TCCNGGA	1 cut(s)	1514
PkrI	GCNGC	9 cut(s)	191, 282, 882, 1474, 1603, 1690, 1889, 2017, 2056
Ple19I	CGATCG	1 cut(s)	374
PleI	GAGTC	4 cut(s)	280, 302, 619, 1546
PpsI	GAGTC	4 cut(s)	280, 302, 619, 1546
PpuMI	RGGWCCY	1 cut(s)	667
PscI	ACATGT	2 cut(s)	951, 2537
PsiI	TTATAA	3 cut(s)	1347, 1523, 2387
Psp5II	RGGWCCY	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	1287, 1580
PspFI	CCCAGC	1 cut(s)	1727
PspGI	CCWGG	2 cut(s)	1287, 1580
PspN4I	GGNNCC	3 cut(s)	193, 668, 1897
PspPI	GGNCC	5 cut(s)	181, 667, 817, 1885, 2251
PspPPI	RGGWCCY	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	1895
PsyI	GACNNNGTC	2 cut(s)	289, 311
PvuI	CGATCG	1 cut(s)	374
RruI	TCGCGA	1 cut(s)	440
RsaI	GTAC	3 cut(s)	853, 903, 2307
RsaNI	GTAC	3 cut(s)	852, 902, 2306
RseI	CAYNNNNRTG	1 cut(s)	1683
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	7 cut(s)	594, 1242, 1617, 1710, 1733, 1923, 2460
SatI	GCNGC	9 cut(s)	190, 281, 881, 1473, 1602, 1689, 1888, 2016, 2055
Sau96I	GGNCC	5 cut(s)	181, 667, 817, 1885, 2251
SchI	GAGTC	4 cut(s)	280, 302, 620, 1547
ScrFI	CCNGG	3 cut(s)	1289, 1516, 1582
SduI	GDGCHC	1 cut(s)	2042
SfaNI	GCATC	8 cut(s)	667, 1002, 1244, 1288, 1351, 1384, 1936, 2178
Sfr303I	CCGCGG	1 cut(s)	190
SfuI	TTCGAA	1 cut(s)	545
SgrBI	CCGCGG	1 cut(s)	190
SinI	GGWCC	3 cut(s)	667, 817, 2251
SmiMI	CAYNNNNRTG	1 cut(s)	1683
SmlI	CTYRAG	6 cut(s)	227, 488, 608, 1462, 1721, 2459
SmoI	CTYRAG	6 cut(s)	227, 488, 608, 1462, 1721, 2459
SphI	GCATGC	1 cut(s)	1980
SspI	AATATT	1 cut(s)	2339
SspMI	CTAG	8 cut(s)	741, 1152, 1379, 1437, 1455, 1610, 1692, 2163
StyD4I	CCNGG	3 cut(s)	1287, 1514, 1580
StyI	CCWWGG	1 cut(s)	1563
TaaI	ACNGT	3 cut(s)	906, 1707, 2357
TaiI	ACGT	2 cut(s)	621, 1148
TaqI	TCGA	9 cut(s)	171, 300, 344, 374, 545, 980, 992, 2396, 2402
TatI	WGTACW	2 cut(s)	851, 2305
TauI	GCSGC	5 cut(s)	192, 283, 1691, 1890, 2057
TfiI	GAWTC	6 cut(s)	7, 989, 1135, 2048, 2425, 2504
Tru1I	TTAA	7 cut(s)	594, 1242, 1617, 1710, 1733, 1923, 2460
Tru9I	TTAA	7 cut(s)	594, 1242, 1617, 1710, 1733, 1923, 2460
TscAI	CASTG	6 cut(s)	932, 1057, 2102, 2362, 2376, 2458
TseFI	GTSAC	3 cut(s)	718, 1991, 2447
TseI	GCWGC	4 cut(s)	880, 1472, 1601, 2015
Tsp45I	GTSAC	3 cut(s)	718, 1991, 2447
TspDTI	ATGAA	5 cut(s)	1425, 2144, 2259, 2300, 2507
TspGWI	ACGGA	2 cut(s)	725, 2420
TspRI	CASTG	6 cut(s)	932, 1057, 2102, 2362, 2376, 2458
Tth111I	GACNNNGTC	2 cut(s)	289, 311
Vha464I	CTTAAG	1 cut(s)	2459
VpaK11BI	GGWCC	3 cut(s)	667, 817, 2251
XapI	RAATTY	6 cut(s)	38, 403, 547, 1255, 1333, 2074
XbaI	TCTAGA	1 cut(s)	1378
XceI	RCATGY	9 cut(s)	454, 560, 955, 1273, 1776, 1869, 1980, 2015, 2541
XmnI	GAANNNNTTC	1 cut(s)	1139
XspI	CTAG	8 cut(s)	741, 1152, 1379, 1437, 1455, 1610, 1692, 2163
Zsp2I	ATGCAT	3 cut(s)	682, 1366, 1867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.