Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Forward (+)

80197498 .. 80200366

Gene Structure 2869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG586100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGCCCTCCGCGGCTCCCACCCTGACCTCCCCACCTACTCCCTCCTCCTCAAGTCCTGCCTCCGCTCCCGCAACTTCCACCTCGGGAAGCTCGCCCACGCCCGCCTCGCTCAGTCCAATCTCGACCCCGACTCTGTCATTCTCAACTCCTTGATTAGCCTCTACTCGAAATCGGGAGACTTTGAAAAGGCGCGATCGATCTTTCAAACTATGGGAGAGAAGAGAAATTTGGTGTCTTGGAGTGCGATGGTGTCGTGTTTCGCGAACAACGGCATGTCGTTGGAGGCGGTTTCGGCGTTTGTTGATATGCTTGAGGAGGGGTTTTACCCGAACGAGTTTTGCTTTGCGTCGGTTGTTCGGGCGTGTTCGAATTCGGAGCATGTTGCGATTGGGAAGGTGGTTTTCGGGTCGGTGATTAAAACTGGGTATCTTGAGTCTGACGTGTGTGTTGGGTCTTCATTGATTGATATGTTTGCTAAAGGTGGTGGGGACTTAAGGGATGCATATAAGGTGTTTGAGAAAATGGCTGAGACGGATGTGGTGACTTGGAGCTTGATGATCACCAGGTTTGCGCAGATGGGTGATCCGAGAAAGGCGGTTGAGTTGTATATGGATATGTTGTCAAATGGGCTAATGCCGGACCAGTTTACGTTAAGTGGTGTTGTATCGGCTTGTACAAAGTTGGGGTCGTTGGCGTTGGGGCAGCAGTTGCATTCGTGGGCTGTACGGTCTCGGTTGGGTTTGGATCACTGCGTTGGGTGTTGTTTGGTGGACATGTATGCCAAGTGTGGAGGTGGTGGGTCGATGAGTGATTCGAGGAAGGTGTTTGATCGGATGCGAGAGCATAGTGTTATGTCTTGGACTGCTGTTATCACTGGATATGTGCAGAGTGGAGGGGGCGATGAGGAAGCTGTCAAGCTATTTGTTGAAATGATCTCGTGTGGTCATGTTTCGCCGAATCATTTCACGTTTGCTAGCGTTCTGAAGGCTTGTGCAAACCTTTCTGATGTGCGTAAGGGAGAGCAAGTTCACTCCCTTGCTGTGAAACTTGGTCTTGCATCGGTTAATTGTGTGGGGAATTCACTTATTAGCATGTATGCAAAGTCTGGCCAGGTGGAAGATGCGCGGAAAGCTTTTGATCTTCTGTATGAGAAGAATTTGATATCTTATAATACAATCGTTGATGCATATGCCAAGCATCTAGACACAGAAGAAGCCTTTGGACTTCTCCATGAAGTTGAGAATACCGGACTTGGGGCTAGTGCTTTCACATTTGCTAGTCTCTTGAGTGGAGCTGCCAGCCTTTGTGCAGTTGATAAGGGCGAGCAAATACATTCCCGGATTATAAAATCAGGATTTGAGTCAAACCAAAGCATTTGCAATGCCTTGGTTTCTATGTATTCCAGGTGTGGAAACATAGACGCTGCTTTTCTAGTGTTTAATGAGATGGAAGATTGGAATGTTATATCATGGACTTCAATGATCACAGGTGTTGTGTTCGCTGCTGATGCTGCATACTCGGTGCATAATTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

512

Amino Acids

55.51

Weight (kDa)

5.8

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 123	2.3e-06	PPR repeat family
PPR_2	PF13041	179 - 226	6.6e-10	PPR repeat family
PPR	PF01535	181 - 211	5.3e-06	PPR repeat
PPR_2	PF13041	283 - 333	3e-07	PPR repeat family
PPR_2	PF13041	386 - 432	9.3e-07	PPR repeat family
PPR_2	PF13041	456 - 497	4.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1170, 1346
Acc16I	TGCGCA	1 cut(s)	573
AccBSI	CCGCTC	1 cut(s)	66
AccII	CGCG	4 cut(s)	12, 193, 263, 1126
AciI	CCGC	8 cut(s)	10, 12, 64, 70, 103, 287, 596, 1126
AclWI	GGATC	2 cut(s)	578, 753
AcoI	YGGCCR	1 cut(s)	1108
AcsI	RAATTY	4 cut(s)	226, 370, 1078, 1156
AcuI	CTGAAG	1 cut(s)	1004
AfaI	GTAC	2 cut(s)	676, 726
AfiI	CCNNNNNNNGG	1 cut(s)	1254
AflII	CTTAAG	1 cut(s)	493
AflIII	ACRYGT	2 cut(s)	441, 774
AgsI	TTSAA	5 cut(s)	185, 206, 929, 1479, 1533
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	3 cut(s)	563, 1110, 1403
AjuI	GAANNNNNNNTTGG	4 cut(s)	212, 244, 1203, 1235
AloI	GAACNNNNNNTCC	2 cut(s)	1011, 1043
AluBI	AGCT	6 cut(s)	91, 552, 911, 919, 1133, 1295
AluI	AGCT	6 cut(s)	91, 552, 911, 919, 1133, 1295
Alw26I	GTCTC	4 cut(s)	171, 524, 735, 1286
AlwI	GGATC	2 cut(s)	578, 753
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	3, 1108
ApeKI	GCWGC	5 cut(s)	703, 1295, 1424, 1502, 1511
ApoI	RAATTY	4 cut(s)	226, 370, 1078, 1156
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
Asp700I	GAANNNNTTC	1 cut(s)	962
AspLEI	GCGC	3 cut(s)	193, 574, 1126
AspS9I	GGNCC	2 cut(s)	4, 640
AsuC2I	CCSGG	1 cut(s)	1339
AsuHPI	GGTGA	4 cut(s)	424, 553, 553, 593
AsuII	TTCGAA	1 cut(s)	368
AsuNHI	GCTAGC	1 cut(s)	974
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	1110
BauI	CACGAG	1 cut(s)	937
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	5 cut(s)	715, 1282, 1411, 1489, 1498
BccI	CCATC	3 cut(s)	241, 571, 1441
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	3 cut(s)	565, 1112, 1405
BclI	TGATCA	2 cut(s)	558, 1482
BcnI	CCSGG	1 cut(s)	1339
BcoDI	GTCTC	4 cut(s)	171, 524, 735, 1286
BfaI	CTAG	5 cut(s)	975, 1202, 1260, 1278, 1433
BfrI	CTTAAG	1 cut(s)	493
BisI	GCNGC	6 cut(s)	13, 704, 1296, 1425, 1503, 1512
BlsI	GCNGC	6 cut(s)	14, 705, 1297, 1426, 1504, 1513
Bme1390I	CCNGG	4 cut(s)	565, 1112, 1339, 1405
Bme18I	GGWCC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	4, 640
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	4 cut(s)	565, 1112, 1339, 1405
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	7 cut(s)	490, 825, 1067, 1111, 1174, 1207, 1498
BmtI	GCTAGC	1 cut(s)	978
BmuI	ACTGGG	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	368
BpuEI	CTTGAG	4 cut(s)	35, 332, 452, 1306
BpuMI	CCSGG	1 cut(s)	1339
Bsa29I	ATCGAT	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	10, 82, 1386
BsaWI	WCCGGW	1 cut(s)	1247
BsaXI	ACNNNNNCTCC	2 cut(s)	1011, 1041
Bsc4I	CCNNNNNNNGG	1 cut(s)	1254
Bse1I	ACTGG	3 cut(s)	427, 643, 880
Bse3DI	GCAATG	1 cut(s)	1387
BseBI	CCWGG	3 cut(s)	565, 1112, 1405
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	10, 82, 1386
BseGI	GGATG	3 cut(s)	505, 541, 840
BseLI	CCNNNNNNNGG	1 cut(s)	1254
BseMI	GCAATG	1 cut(s)	1387
BseMII	CTCAG	2 cut(s)	125, 519
BseNI	ACTGG	3 cut(s)	427, 643, 880
BseRI	GAGGAG	3 cut(s)	35, 38, 329
BseXI	GCAGC	5 cut(s)	715, 1282, 1411, 1489, 1498
BsgI	GTGCAG	2 cut(s)	905, 1329
Bsh1236I	CGCG	4 cut(s)	12, 193, 263, 1126
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	5, 1110
BshVI	ATCGAT	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	3 cut(s)	638, 1248, 1339
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	1254
BsmAI	GTCTC	4 cut(s)	171, 524, 735, 1286
BsmBI	CGTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	5, 1110
Bso31I	GGTCTC	1 cut(s)	735
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1407I	TGTACA	1 cut(s)	674
Bsp143I	GATC	9 cut(s)	194, 198, 558, 583, 745, 829, 933, 1138, 1482
Bsp68I	TCGCGA	1 cut(s)	263
BspACI	CCGC	8 cut(s)	10, 12, 64, 70, 103, 287, 596, 1126
BspANI	GGCC	2 cut(s)	5, 1110
BspCNI	CTCAG	2 cut(s)	124, 520
BspDI	ATCGAT	1 cut(s)	197
BspFNI	CGCG	4 cut(s)	12, 193, 263, 1126
BspLI	GGNNCC	1 cut(s)	16
BspOI	GCTAGC	1 cut(s)	978
BspPI	GGATC	2 cut(s)	578, 753
BspT104I	TTCGAA	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	735
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	1387
BsrGI	TGTACA	1 cut(s)	674
BsrI	ACTGG	3 cut(s)	427, 643, 880
BssECI	CCNNGG	3 cut(s)	10, 82, 1386
BssMI	GATC	9 cut(s)	194, 198, 558, 583, 745, 829, 933, 1138, 1482
BssSI	CACGAG	1 cut(s)	937
BssT1I	CCWWGG	1 cut(s)	1386
Bst2BI	CACGAG	1 cut(s)	937
Bst2UI	CCWGG	3 cut(s)	565, 1112, 1405
Bst4CI	ACNGT	1 cut(s)	729
Bst6I	CTCTTC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	493
BstAPI	GCANNNNNTGC	1 cut(s)	709
BstAUI	TGTACA	1 cut(s)	674
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	5 cut(s)	93, 103, 976, 1300, 1325
BstDEI	CTNAG	2 cut(s)	111, 528
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	505, 541, 840
BstFNI	CGCG	4 cut(s)	12, 193, 263, 1126
BstHHI	GCGC	3 cut(s)	193, 574, 1126
BstKTI	GATC	9 cut(s)	197, 201, 561, 586, 748, 832, 936, 1141, 1485
BstMAI	GTCTC	4 cut(s)	171, 524, 735, 1286
BstMBI	GATC	9 cut(s)	194, 198, 558, 583, 745, 829, 933, 1138, 1482
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 293, 709, 1130, 1508, 1511
BstNI	CCWGG	3 cut(s)	565, 1112, 1405
BstNSI	RCATGY	4 cut(s)	277, 383, 778, 1096
BstSCI	CCNGG	4 cut(s)	563, 1110, 1337, 1403
BstUI	CGCG	4 cut(s)	12, 193, 263, 1126
BstV1I	GCAGC	5 cut(s)	715, 1282, 1411, 1489, 1498
BstV2I	GAAGAC	1 cut(s)	447
Bsu15I	ATCGAT	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	5, 1110
BsuTUI	ATCGAT	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	2 cut(s)	260, 915
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	505, 541, 840
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	748, 873
BtuMI	TCGCGA	1 cut(s)	263
Cac8I	GCNNGC	5 cut(s)	93, 103, 976, 1300, 1325
CfoI	GCGC	3 cut(s)	193, 574, 1126
Cfr13I	GGNCC	2 cut(s)	4, 640
Cfr42I	CCGCGG	1 cut(s)	13
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	2 cut(s)	336, 1430
CsiI	ACCWGGT	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	675, 725
CviAII	CATG	7 cut(s)	274, 380, 775, 947, 1093, 1232, 1470
CviQI	GTAC	2 cut(s)	675, 725
DdeI	CTNAG	2 cut(s)	111, 528
DpnI	GATC	9 cut(s)	196, 200, 560, 585, 747, 831, 935, 1140, 1484
DpnII	GATC	9 cut(s)	194, 198, 558, 583, 745, 829, 933, 1138, 1482
EaeI	YGGCCR	1 cut(s)	1108
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	1386
Eco31I	GGTCTC	1 cut(s)	735
Eco32I	GATATC	1 cut(s)	1164
Eco47I	GGWCC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	1004
Eco88I	CYCGRG	1 cut(s)	83
EcoRI	GAATTC	2 cut(s)	370, 1078
EcoRII	CCWGG	3 cut(s)	563, 1110, 1403
EcoRV	GATATC	1 cut(s)	1164
EcoT14I	CCWWGG	1 cut(s)	1386
EcoT22I	ATGCAT	2 cut(s)	505, 1189
ErhI	CCWWGG	1 cut(s)	1386
Esp3I	CGTCTC	1 cut(s)	524
FaeI	CATG	7 cut(s)	277, 383, 778, 950, 1096, 1235, 1473
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	7 cut(s)	273, 379, 774, 946, 1092, 1231, 1469
FauI	CCCGC	2 cut(s)	77, 110
FauNDI	CATATG	1 cut(s)	1189
FbaI	TGATCA	2 cut(s)	558, 1482
Fnu4HI	GCNGC	6 cut(s)	13, 704, 1296, 1425, 1503, 1512
FokI	GGATG	3 cut(s)	512, 548, 847
Fsp4HI	GCNGC	6 cut(s)	13, 704, 1296, 1425, 1503, 1512
FspBI	CTAG	5 cut(s)	975, 1202, 1260, 1278, 1433
FspI	TGCGCA	1 cut(s)	573
GlaI	GCGC	3 cut(s)	192, 573, 1125
GluI	GCNGC	6 cut(s)	13, 704, 1296, 1425, 1503, 1512
HaeIII	GGCC	2 cut(s)	5, 1110
HapII	CCGG	3 cut(s)	638, 1248, 1339
HgaI	GACGC	2 cut(s)	336, 1430
HhaI	GCGC	3 cut(s)	193, 574, 1126
Hin1II	CATG	7 cut(s)	277, 383, 778, 950, 1096, 1235, 1473
Hin6I	GCGC	3 cut(s)	191, 572, 1124
HinP1I	GCGC	3 cut(s)	191, 572, 1124
HindIII	AAGCTT	1 cut(s)	1131
HinfI	GANTC	5 cut(s)	131, 434, 812, 958, 1361
HpaII	CCGG	3 cut(s)	638, 1248, 1339
HphI	GGTGA	4 cut(s)	424, 553, 553, 593
Hpy166II	GTNNAC	3 cut(s)	648, 772, 1030
Hpy188I	TCNGA	6 cut(s)	376, 439, 588, 834, 984, 1006
Hpy188III	TCNNGA	8 cut(s)	85, 122, 174, 262, 431, 1202, 1285, 1353
Hpy8I	GTNNAC	3 cut(s)	648, 772, 1030
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	3 cut(s)	388, 814, 979
HpyCH4III	ACNGT	1 cut(s)	729
HpyCH4IV	ACGT	3 cut(s)	441, 650, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 293, 709, 1130, 1508, 1511
HpyF3I	CTNAG	2 cut(s)	111, 528
HpySE526I	ACGT	3 cut(s)	441, 650, 968
Hsp92II	CATG	7 cut(s)	277, 383, 778, 950, 1096, 1235, 1473
HspAI	GCGC	3 cut(s)	191, 572, 1124
Ksp22I	TGATCA	2 cut(s)	558, 1482
KspI	CCGCGG	1 cut(s)	13
Kzo9I	GATC	9 cut(s)	194, 198, 558, 583, 745, 829, 933, 1138, 1482
LmnI	GCTCC	5 cut(s)	20, 71, 376, 549, 1292
Lsp1109I	GCAGC	5 cut(s)	715, 1282, 1411, 1489, 1498
LweI	GCATC	7 cut(s)	490, 825, 1067, 1111, 1174, 1207, 1498
MabI	ACCWGGT	1 cut(s)	563
MaeI	CTAG	5 cut(s)	975, 1202, 1260, 1278, 1433
MaeII	ACGT	3 cut(s)	441, 650, 968
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	9 cut(s)	196, 200, 560, 585, 747, 831, 935, 1140, 1484
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	9 cut(s)	194, 198, 558, 583, 745, 829, 933, 1138, 1482
MboII	GAAGA	7 cut(s)	232, 447, 1130, 1133, 1165, 1223, 1463
MlsI	TGGCCA	1 cut(s)	1110
MluCI	AATT	6 cut(s)	226, 370, 1066, 1078, 1156, 1528
MluNI	TGGCCA	1 cut(s)	1110
MlyI	GAGTC	3 cut(s)	125, 443, 1370
MmeI	TCCRAC	1 cut(s)	261
Mox20I	TGGCCA	1 cut(s)	1110
Mph1103I	ATGCAT	2 cut(s)	505, 1189
MroXI	GAANNNNTTC	1 cut(s)	962
MscI	TGGCCA	1 cut(s)	1110
MseI	TTAA	5 cut(s)	417, 494, 653, 1065, 1440
Msp20I	TGGCCA	1 cut(s)	1110
MspA1I	CMGCKG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	493
MspI	CCGG	3 cut(s)	638, 1248, 1339
MspR9I	CCNGG	4 cut(s)	565, 1112, 1339, 1405
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	3 cut(s)	565, 1112, 1405
MvnI	CGCG	4 cut(s)	12, 193, 263, 1126
MwoI	GCNNNNNNNGC	6 cut(s)	107, 293, 709, 1130, 1508, 1511
NciI	CCSGG	1 cut(s)	1339
NdeI	CATATG	1 cut(s)	1189
NdeII	GATC	9 cut(s)	194, 198, 558, 583, 745, 829, 933, 1138, 1482
NheI	GCTAGC	1 cut(s)	974
NlaIII	CATG	7 cut(s)	277, 383, 778, 950, 1096, 1235, 1473
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	541
NruI	TCGCGA	1 cut(s)	263
NsbI	TGCGCA	1 cut(s)	573
NsiI	ATGCAT	2 cut(s)	505, 1189
NspI	RCATGY	4 cut(s)	277, 383, 778, 1096
NspV	TTCGAA	1 cut(s)	368
PciI	ACATGT	1 cut(s)	774
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	962
PfeI	GAWTC	2 cut(s)	812, 958
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	1337
PkrI	GCNGC	6 cut(s)	14, 705, 1297, 1426, 1504, 1513
Ple19I	CGATCG	1 cut(s)	197
PleI	GAGTC	3 cut(s)	125, 442, 1369
PpsI	GAGTC	3 cut(s)	125, 442, 1369
PscI	ACATGT	1 cut(s)	774
PsiI	TTATAA	2 cut(s)	1170, 1346
Psp6I	CCWGG	3 cut(s)	563, 1110, 1403
PspGI	CCWGG	3 cut(s)	563, 1110, 1403
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	4, 640
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	263
RsaI	GTAC	2 cut(s)	676, 726
RsaNI	GTAC	2 cut(s)	675, 725
SacII	CCGCGG	1 cut(s)	13
SaqAI	TTAA	5 cut(s)	417, 494, 653, 1065, 1440
SatI	GCNGC	6 cut(s)	13, 704, 1296, 1425, 1503, 1512
Sau3AI	GATC	9 cut(s)	194, 198, 558, 583, 745, 829, 933, 1138, 1482
Sau96I	GGNCC	2 cut(s)	4, 640
SchI	GAGTC	3 cut(s)	125, 443, 1370
ScrFI	CCNGG	4 cut(s)	565, 1112, 1339, 1405
SexAI	ACCWGGT	1 cut(s)	563
SfaNI	GCATC	7 cut(s)	490, 825, 1067, 1111, 1174, 1207, 1498
Sfr303I	CCGCGG	1 cut(s)	13
SfuI	TTCGAA	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	640
SmlI	CTYRAG	5 cut(s)	50, 311, 431, 493, 1285
SmoI	CTYRAG	5 cut(s)	50, 311, 431, 493, 1285
Sse9I	AATT	6 cut(s)	226, 370, 1066, 1078, 1156, 1528
SsiI	CCGC	8 cut(s)	10, 12, 64, 70, 103, 287, 596, 1126
SspMI	CTAG	5 cut(s)	975, 1202, 1260, 1278, 1433
StyD4I	CCNGG	4 cut(s)	563, 1110, 1337, 1403
StyI	CCWWGG	1 cut(s)	1386
TaaI	ACNGT	1 cut(s)	729
TaiI	ACGT	3 cut(s)	444, 653, 971
TaqI	TCGA	6 cut(s)	123, 167, 197, 368, 803, 815
TasI	AATT	6 cut(s)	226, 370, 1066, 1078, 1156, 1528
TatI	WGTACW	1 cut(s)	674
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	812, 958
Tru1I	TTAA	5 cut(s)	417, 494, 653, 1065, 1440
Tru9I	TTAA	5 cut(s)	417, 494, 653, 1065, 1440
TscAI	CASTG	2 cut(s)	755, 880
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	5 cut(s)	703, 1295, 1424, 1502, 1511
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	447, 1248
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	755, 880
Tth111I	GACNNNGTC	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	4 cut(s)	226, 370, 1078, 1156
XbaI	TCTAGA	1 cut(s)	1201
XceI	RCATGY	4 cut(s)	277, 383, 778, 1096
XmnI	GAANNNNTTC	1 cut(s)	962
XspI	CTAG	5 cut(s)	975, 1202, 1260, 1278, 1433
Zsp2I	ATGCAT	2 cut(s)	505, 1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.