Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Forward (+)

74935698 .. 74938258

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G047630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2532 bp

ATGCTGATTCCAAGCCTCTCGCTTCCTGCTCCCGCCAAATTCCCTCCGCCCTCTTCTTCTTCTTCTTCTTTTTCTCTCCAACACCACCAAGACCCAAACTTTGAGCCTCTCCACCGCCGTCTGATCACCCAAATCAATGTCGGCCATCTCCGCAACGCAATCTCCACCCTCGATCTCATGGCCCTCCGCGGCTCCCACCCTGACCTCCCCACCTACTCCCTCCTCCTCAAGTCCTGCCTCCGCTCCCGCAACTTCCACCTCGGGAAGCTCGTCCACGCGCGGCTGACTCAGTCCCAACTCGACCCCGACTCTGTCATTCTCAACTCGTTGATTAGCCTCTACTCGAAATCGGGAGACTTTGAAAAGGCGCGATCGATCTTTCAAACTATGGGAGAGAAGAGAAATTTGGTGTCTTGGAGTGCGATGGTGTCGTGTTTCGCGAACAACGGCATGTCGTTGGAGGCGGTTTCGGCGTTTGTTGATATGCTTGAGGAGGGGTTTTACCCGAACGAGTTTTGCTTTGCGTCGGTTGTTCGGGCGTGTTCGAATTCGGAGCATGTTGCGATTGGGAAGGTGGTTTTCGGGTCGGTGATTAAAACTGGGTATCTTGAGTCTGACGTGTGTGTTGGGTGGTGGGGACTAAGGGATGCATATAAGGTGTTTGAGAAAATGGCTGAGACGGATGTGGTGACTTGGAGCTTGATGATCACTAGGTTTGCGCAGATGGGTGATCCGAGAAAGGCGGTTGAGTTGTATATGGATATGTTGTCAAATGGGCTAATGCCGGACCAGTTTACGATAAGTGGTGTTGTATCGGCTTGTACAAAGTTGGGGTCGTTGGCGTTGGGGCAGCAGTTGCATTCGTGGGCTGTACGGTCTCGGTTGGGTTTGGATCACTGCGTTGGGTGTTGTTTGGTGGACATGTATGCCAAGTGTGGAGGTGGTGGGTCGATGAGTGATTCGAGGAAGGTGTTTGATCGGATGCGAGAGCATAGTGTTATGTCTTGGACTGCTGTTATCACTGGATATGTGCAGAGTGGAGGGGGCGATGAGGAAGCTGTCAAGCTATTTGTTGAAATGATCTCGTGTGGTCATGTTTCGCCGAATCATTTCACGTTTGCTAGCATTCTGAAGGCTTGTGCAAACCTTTCTGATCTGCGTAAGGGAGAGCAAGTTCACTCCCTTGCTGTGAAACTTGGTCTTGCATCGGTTAATTGTGTGGGGAATTCACTTATTAGCATGTATGCAAAGTCTGGCCAGGTGGAAGATGCGCGGAAAGCTTTTGATCTTCTGTATGAGAAGAATTTGATATCTTATAATACAATCGTTGATGCATATGCCAAGCATCTAGACACAGAAGAAGCCTTTGGACTTCTCCATGAAATTGAGAATACCGGACTTGGGGCTAGTGCTTTCACATTTGCTAGTCTCTTGAGTGGAGCTGCCAGCCTTTGTGCAGTTGATAAGGGCGAGCAAATACATTCCCGGATTATAAAATCAGGATTTGAGTCAAACCAAAGCATTTGCAATGCCTTGGTTTCTATGTATTCCAGGTGTGGAAACATAGACGCTGCTTTTCTAGTGTTTAATGAGATGGAAGATTGGAATGTTATATCATGGACTTCAATGATCACAGGTTTTGCAAAACATGGTTATGCGGCTAGAGCTGTGGGACTGTTTAACCAAATGCTTGAGGCTGGGTTAAAACCGAATGAGATCACATATATTGCTGTTTTATCAGCATGTAGCCATGCCGGTTTGATTTCTGAGGGGTGGAAACACTTGAAGGAAATGCACCAACAACATGGTCTTGTCCCAAAAATGGAACACTATGCATGTATGGTTGATTTATTGGGCCGCTCAGGATCCCTTGTAGAAGCCATTGAGTTTATTAACTCAATGCCTTTTGAAGCTGATGCACTAATCTGGCGAACATTTCTTGGAGCATGCCGAGTGCATGGTGACATTGAGCTTGGGAAACATGCAGCAAAGATGATTATTAAGCAGAACCCACATGATTCAGCAGCATATAGCTTACTATCAAATTTGTATGCTTCCACGGGTCAGTGGGAAGAAGTAGCAAATATAAGAAAAAATATGAAAGAGAAAGCTTTGGTCAAAGAAGCAGGTTCTAGCTGGATAGAGGTGAAGAATAAGATGCACAAGTTCCATGTTGGAGATACTTCGCACCCAAAAGCACGGGAGATTTATGATGAACTGGACCAATTGGGTTCAAAGATAAAGAAATTGGGTTATGTCCCCGATACAGATTTTGTACTTCATGAGGTGGAAGAGGAGCAAAAGGAATATTATTTGTTTCAGCACAGTGAGAAATTAGCAGTGGCATTTGGTCTTATAAGCACATCGAAATCGAAACCCATAAGAGTATTCAAGAATCTCCGTGTTTGTGGAGATTGTCACACTGTACTTAAGTATATTTCAAAAGCCACGGGAAGAGAAATAGTGGTAAGGGATTCAAATCGGTTTCATCAGTTCGAGGATGGGACATGTTCTTGCAATGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

843

Amino Acids

93.35

Weight (kDa)

6.56

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	135 - 182	4.4e-06	PPR repeat family
PPR_2	PF13041	228 - 275	1e-09	PPR repeat family
PPR	PF01535	230 - 260	9.7e-06	PPR repeat
PPR_2	PF13041	332 - 382	3.8e-07	PPR repeat family
PPR_2	PF13041	435 - 481	5.5e-07	PPR repeat family
PPR_2	PF13041	536 - 583	1.5e-11	PPR repeat family
PPR	PF01535	538 - 568	1.9e-06	PPR repeat
E_motif	PF20431	653 - 715	2.8e-16	E motif
Eplus_motif	PF20430	721 - 743	8.6e-07	E+ motif
DYW_deaminase	PF14432	751 - 843	2.5e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1317, 1493, 2357
Acc16I	TGCGCA	1 cut(s)	720
Acc36I	ACCTGC	1 cut(s)	2117
AccBSI	CCGCTC	2 cut(s)	243, 1860
AccII	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1273
AclWI	GGATC	4 cut(s)	725, 900, 1860, 1873
AcoI	YGGCCR	2 cut(s)	142, 1255
AcsI	RAATTY	6 cut(s)	38, 403, 547, 1225, 1303, 2044
AcuI	CTGAAG	1 cut(s)	1151
AfaI	GTAC	4 cut(s)	823, 873, 2277, 2427
AfiI	CCNNNNNNNGG	2 cut(s)	1401, 1822
AflII	CTTAAG	1 cut(s)	2429
AflIII	ACRYGT	3 cut(s)	618, 921, 2507
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	2 cut(s)	1257, 1550
AjuI	GAANNNNNNNTTGG	4 cut(s)	389, 421, 1350, 1382
AloI	GAACNNNNNNTCC	2 cut(s)	1158, 1190
Alw26I	GTCTC	4 cut(s)	348, 671, 882, 1433
AlwI	GGATC	4 cut(s)	725, 900, 1860, 1873
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	142, 180, 1255, 1855
ApeKI	GCWGC	5 cut(s)	850, 1442, 1571, 1985, 2024
ApoI	RAATTY	6 cut(s)	38, 403, 547, 1225, 1303, 2044
ArsI	GACNNNNNNTTYG	4 cut(s)	83, 115, 818, 850
Asp700I	GAANNNNTTC	1 cut(s)	1109
AspLEI	GCGC	4 cut(s)	280, 370, 721, 1273
AspS9I	GGNCC	4 cut(s)	181, 787, 1855, 2221
AsuC2I	CCSGG	1 cut(s)	1486
AsuHPI	GGTGA	6 cut(s)	118, 601, 700, 740, 1973, 2158
AsuII	TTCGAA	1 cut(s)	545
AsuNHI	GCTAGC	1 cut(s)	1121
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	2 cut(s)	787, 2221
BalI	TGGCCA	1 cut(s)	1257
BamHI	GGATCC	1 cut(s)	1865
BauI	CACGAG	1 cut(s)	1084
BbvI	GCAGC	5 cut(s)	862, 1429, 1558, 1997, 2036
BccI	CCATC	5 cut(s)	153, 418, 718, 1588, 2495
BceAI	ACGGC	2 cut(s)	102, 463
BciT130I	CCWGG	2 cut(s)	1259, 1552
BclI	TGATCA	3 cut(s)	123, 705, 1629
BcnI	CCSGG	1 cut(s)	1486
BcoDI	GTCTC	4 cut(s)	348, 671, 882, 1433
BfaI	CTAG	8 cut(s)	711, 1122, 1349, 1407, 1425, 1580, 1662, 2133
BfrI	CTTAAG	1 cut(s)	2429
BfuAI	ACCTGC	1 cut(s)	2117
BisI	GCNGC	9 cut(s)	190, 281, 851, 1443, 1572, 1659, 1858, 1986, 2025
BlsI	GCNGC	9 cut(s)	191, 282, 852, 1444, 1573, 1660, 1859, 1987, 2026
Bme1390I	CCNGG	3 cut(s)	1259, 1486, 1552
Bme18I	GGWCC	2 cut(s)	787, 2221
BmeT110I	CYCGRG	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	4 cut(s)	181, 787, 1855, 2221
BmiI	GGNNCC	2 cut(s)	193, 1867
BmrFI	CCNGG	3 cut(s)	1259, 1486, 1552
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	8 cut(s)	637, 972, 1214, 1258, 1321, 1354, 1906, 2148
BmtI	GCTAGC	1 cut(s)	1125
BmuI	ACTGGG	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	1861
Bpu14I	TTCGAA	1 cut(s)	545
BpuEI	CTTGAG	5 cut(s)	212, 509, 629, 1453, 1712
BpuMI	CCSGG	1 cut(s)	1486
Bsa29I	ATCGAT	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	2478
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	5 cut(s)	187, 259, 1533, 2058, 2448
BsaWI	WCCGGW	1 cut(s)	1394
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 1158, 1188
Bsc4I	CCNNNNNNNGG	2 cut(s)	1401, 1822
Bse118I	RCCGGY	1 cut(s)	1754
Bse1I	ACTGG	5 cut(s)	604, 790, 1027, 2223, 2531
Bse3DI	GCAATG	2 cut(s)	1534, 2524
Bse8I	GATNNNNATC	1 cut(s)	2478
BseBI	CCWGG	2 cut(s)	1259, 1552
BseCI	ATCGAT	1 cut(s)	374
BseDI	CCNNGG	5 cut(s)	187, 259, 1533, 2058, 2448
BseGI	GGATG	4 cut(s)	652, 688, 987, 2506
BseJI	GATNNNNATC	1 cut(s)	2478
BseLI	CCNNNNNNNGG	2 cut(s)	1401, 1822
BseMI	GCAATG	2 cut(s)	1534, 2524
BseMII	CTCAG	4 cut(s)	302, 666, 1758, 1875
BseNI	ACTGG	5 cut(s)	604, 790, 1027, 2223, 2531
BseRI	GAGGAG	4 cut(s)	212, 215, 506, 2309
BseXI	GCAGC	5 cut(s)	862, 1429, 1558, 1997, 2036
BseYI	CCCAGC	1 cut(s)	1697
BsgI	GTGCAG	2 cut(s)	1052, 1476
Bsh1236I	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1273
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	144, 182, 1257, 1857
BshVI	ATCGAT	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	785, 1395, 1486, 1755
BslFI	GGGAC	6 cut(s)	277, 651, 1686, 1799, 2243, 2518
BslI	CCNNNNNNNGG	2 cut(s)	1401, 1822
BsmAI	GTCTC	4 cut(s)	348, 671, 882, 1433
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	6 cut(s)	277, 651, 1686, 1799, 2243, 2518
BsmI	GAATGC	2 cut(s)	859, 1125
BsnI	GGCC	4 cut(s)	144, 182, 1257, 1857
Bso31I	GGTCTC	1 cut(s)	882
BsoBI	CYCGRG	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	821
Bsp68I	TCGCGA	1 cut(s)	440
BspANI	GGCC	4 cut(s)	144, 182, 1257, 1857
BspCNI	CTCAG	4 cut(s)	301, 667, 1759, 1874
BspDI	ATCGAT	1 cut(s)	374
BspFNI	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1273
BspHI	TCATGA	1 cut(s)	2281
BspLI	GGNNCC	2 cut(s)	193, 1867
BspMI	ACCTGC	1 cut(s)	2117
BspOI	GCTAGC	1 cut(s)	1125
BspPI	GGATC	4 cut(s)	725, 900, 1860, 1873
BspT104I	TTCGAA	1 cut(s)	545
BspTI	CTTAAG	1 cut(s)	2429
BspTNI	GGTCTC	1 cut(s)	882
BsrBI	CCGCTC	2 cut(s)	243, 1860
BsrDI	GCAATG	2 cut(s)	1534, 2524
BsrFI	RCCGGY	1 cut(s)	1754
BsrGI	TGTACA	1 cut(s)	821
BsrI	ACTGG	5 cut(s)	604, 790, 1027, 2223, 2531
BssAI	RCCGGY	1 cut(s)	1754
BssECI	CCNNGG	5 cut(s)	187, 259, 1533, 2058, 2448
BssSI	CACGAG	1 cut(s)	1084
BssT1I	CCWWGG	1 cut(s)	1533
Bst2BI	CACGAG	1 cut(s)	1084
Bst2UI	CCWGG	2 cut(s)	1259, 1552
Bst4CI	ACNGT	4 cut(s)	876, 1677, 2327, 2425
Bst6I	CTCTTC	4 cut(s)	58, 392, 2286, 2449
BstAFI	CTTAAG	1 cut(s)	2429
BstAPI	GCANNNNNTGC	1 cut(s)	856
BstAUI	TGTACA	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	1123, 1447, 1472, 1948
BstDEI	CTNAG	5 cut(s)	288, 641, 675, 1767, 1861
BstDSI	CCRYGG	3 cut(s)	187, 2058, 2448
BstF5I	GGATG	4 cut(s)	652, 688, 987, 2506
BstFNI	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1273
BstHHI	GCGC	4 cut(s)	280, 370, 721, 1273
BstMAI	GTCTC	4 cut(s)	348, 671, 882, 1433
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 470, 856, 1277, 1664
BstNI	CCWGG	2 cut(s)	1259, 1552
BstNSI	RCATGY	9 cut(s)	454, 560, 925, 1243, 1746, 1839, 1950, 1985, 2511
BstSCI	CCNGG	3 cut(s)	1257, 1484, 1550
BstUI	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1273
BstV1I	GCAGC	5 cut(s)	862, 1429, 1558, 1997, 2036
BstX2I	RGATCY	1 cut(s)	1865
BstXI	CCANNNNNNTGG	1 cut(s)	1805
BstYI	RGATCY	1 cut(s)	1865
Bsu15I	ATCGAT	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	144, 182, 1257, 1857
BsuTUI	ATCGAT	1 cut(s)	374
BtgI	CCRYGG	3 cut(s)	187, 2058, 2448
BtgZI	GCGATG	2 cut(s)	437, 1062
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	4 cut(s)	652, 688, 987, 2506
BtsI	GCAGTG	2 cut(s)	895, 2346
BtsIMutI	CAGTG	6 cut(s)	895, 1020, 2072, 2332, 2346, 2421
BtuMI	TCGCGA	1 cut(s)	440
BveI	ACCTGC	1 cut(s)	2117
Cac8I	GCNNGC	4 cut(s)	1123, 1447, 1472, 1948
CciI	TCATGA	1 cut(s)	2281
CfoI	GCGC	4 cut(s)	280, 370, 721, 1273
Cfr10I	RCCGGY	1 cut(s)	1754
Cfr13I	GGNCC	4 cut(s)	181, 787, 1855, 2221
Cfr42I	CCGCGG	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	374
CseI	GACGC	2 cut(s)	513, 1577
Csp6I	GTAC	4 cut(s)	822, 872, 2276, 2426
CviQI	GTAC	4 cut(s)	822, 872, 2276, 2426
DdeI	CTNAG	5 cut(s)	288, 641, 675, 1767, 1861
EaeI	YGGCCR	2 cut(s)	142, 1255
Eam1104I	CTCTTC	4 cut(s)	58, 392, 2286, 2449
EarI	CTCTTC	4 cut(s)	58, 392, 2286, 2449
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	1533
Eco31I	GGTCTC	1 cut(s)	882
Eco32I	GATATC	1 cut(s)	1311
Eco47I	GGWCC	2 cut(s)	787, 2221
Eco57I	CTGAAG	1 cut(s)	1151
Eco88I	CYCGRG	1 cut(s)	260
EcoRI	GAATTC	2 cut(s)	547, 1225
EcoRII	CCWGG	2 cut(s)	1257, 1550
EcoRV	GATATC	1 cut(s)	1311
EcoT14I	CCWWGG	1 cut(s)	1533
EcoT22I	ATGCAT	3 cut(s)	652, 1336, 1837
ErhI	CCWWGG	1 cut(s)	1533
Esp3I	CGTCTC	1 cut(s)	671
FaqI	GGGAC	6 cut(s)	277, 651, 1686, 1799, 2243, 2518
FauI	CCCGC	2 cut(s)	40, 254
FauNDI	CATATG	1 cut(s)	1336
FbaI	TGATCA	3 cut(s)	123, 705, 1629
Fnu4HI	GCNGC	9 cut(s)	190, 281, 851, 1443, 1572, 1659, 1858, 1986, 2025
FokI	GGATG	4 cut(s)	659, 695, 994, 2513
Fsp4HI	GCNGC	9 cut(s)	190, 281, 851, 1443, 1572, 1659, 1858, 1986, 2025
FspBI	CTAG	8 cut(s)	711, 1122, 1349, 1407, 1425, 1580, 1662, 2133
FspI	TGCGCA	1 cut(s)	720
GlaI	GCGC	4 cut(s)	279, 369, 720, 1272
GluI	GCNGC	9 cut(s)	190, 281, 851, 1443, 1572, 1659, 1858, 1986, 2025
GsaI	CCCAGC	1 cut(s)	1701
HaeIII	GGCC	4 cut(s)	144, 182, 1257, 1857
HapII	CCGG	4 cut(s)	785, 1395, 1486, 1755
HgaI	GACGC	2 cut(s)	513, 1577
HhaI	GCGC	4 cut(s)	280, 370, 721, 1273
Hin6I	GCGC	4 cut(s)	278, 368, 719, 1271
HinP1I	GCGC	4 cut(s)	278, 368, 719, 1271
HindIII	AAGCTT	2 cut(s)	1278, 2109
HpaII	CCGG	4 cut(s)	785, 1395, 1486, 1755
HphI	GGTGA	6 cut(s)	118, 601, 700, 740, 1973, 2158
Hpy166II	GTNNAC	4 cut(s)	274, 795, 919, 1177
Hpy188I	TCNGA	8 cut(s)	123, 553, 616, 735, 981, 1131, 1153, 1768
Hpy8I	GTNNAC	4 cut(s)	274, 795, 919, 1177
Hpy99I	CGWCG	1 cut(s)	529
HpyAV	CCTTC	4 cut(s)	565, 961, 1126, 1780
HpyCH4III	ACNGT	4 cut(s)	876, 1677, 2327, 2425
HpyCH4IV	ACGT	2 cut(s)	618, 1115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 470, 856, 1277, 1664
HpyF3I	CTNAG	5 cut(s)	288, 641, 675, 1767, 1861
HpySE526I	ACGT	2 cut(s)	618, 1115
HspAI	GCGC	4 cut(s)	278, 368, 719, 1271
Ksp22I	TGATCA	3 cut(s)	123, 705, 1629
KspI	CCGCGG	1 cut(s)	190
LmnI	GCTCC	8 cut(s)	34, 197, 248, 553, 696, 1439, 1943, 2296
Lsp1109I	GCAGC	5 cut(s)	862, 1429, 1558, 1997, 2036
LweI	GCATC	8 cut(s)	637, 972, 1214, 1258, 1321, 1354, 1906, 2148
MaeI	CTAG	8 cut(s)	711, 1122, 1349, 1407, 1425, 1580, 1662, 2133
MaeII	ACGT	2 cut(s)	618, 1115
MaeIII	GTNAC	3 cut(s)	688, 1961, 2417
MbiI	CCGCTC	2 cut(s)	243, 1860
MfeI	CAATTG	1 cut(s)	2225
MflI	RGATCY	1 cut(s)	1865
MlsI	TGGCCA	1 cut(s)	1257
MluNI	TGGCCA	1 cut(s)	1257
MlyI	GAGTC	4 cut(s)	280, 302, 620, 1517
MmeI	TCCRAC	3 cut(s)	103, 438, 2155
Mox20I	TGGCCA	1 cut(s)	1257
Mph1103I	ATGCAT	3 cut(s)	652, 1336, 1837
MroXI	GAANNNNTTC	1 cut(s)	1109
MscI	TGGCCA	1 cut(s)	1257
MseI	TTAA	8 cut(s)	594, 1212, 1587, 1680, 1703, 1893, 2001, 2430
MslI	CAYNNNNRTG	1 cut(s)	1653
Msp20I	TGGCCA	1 cut(s)	1257
MspA1I	CMGCKG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	2429
MspI	CCGG	4 cut(s)	785, 1395, 1486, 1755
MspR9I	CCNGG	3 cut(s)	1259, 1486, 1552
MunI	CAATTG	1 cut(s)	2225
Mva1269I	GAATGC	2 cut(s)	859, 1125
MvaI	CCWGG	2 cut(s)	1259, 1552
MvnI	CGCG	6 cut(s)	189, 278, 280, 370, 440, 1273
MwoI	GCNNNNNNNGC	5 cut(s)	150, 470, 856, 1277, 1664
NciI	CCSGG	1 cut(s)	1486
NdeI	CATATG	1 cut(s)	1336
NheI	GCTAGC	1 cut(s)	1121
NlaIV	GGNNCC	2 cut(s)	193, 1867
NmeAIII	GCCGAG	1 cut(s)	1976
NmuCI	GTSAC	3 cut(s)	688, 1961, 2417
NruI	TCGCGA	1 cut(s)	440
NsbI	TGCGCA	1 cut(s)	720
NsiI	ATGCAT	3 cut(s)	652, 1336, 1837
NspI	RCATGY	9 cut(s)	454, 560, 925, 1243, 1746, 1839, 1950, 1985, 2511
NspV	TTCGAA	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	1950
PagI	TCATGA	1 cut(s)	2281
PciI	ACATGT	2 cut(s)	921, 2507
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 437
PctI	GAATGC	2 cut(s)	859, 1125
PdmI	GAANNNNTTC	1 cut(s)	1109
PfeI	GAWTC	6 cut(s)	7, 959, 1105, 2018, 2395, 2474
PflFI	GACNNNGTC	2 cut(s)	289, 311
PfoI	TCCNGGA	1 cut(s)	1484
PkrI	GCNGC	9 cut(s)	191, 282, 852, 1444, 1573, 1660, 1859, 1987, 2026
Ple19I	CGATCG	1 cut(s)	374
PleI	GAGTC	4 cut(s)	280, 302, 619, 1516
PpsI	GAGTC	4 cut(s)	280, 302, 619, 1516
PscI	ACATGT	2 cut(s)	921, 2507
PsiI	TTATAA	3 cut(s)	1317, 1493, 2357
Psp6I	CCWGG	2 cut(s)	1257, 1550
PspFI	CCCAGC	1 cut(s)	1697
PspGI	CCWGG	2 cut(s)	1257, 1550
PspN4I	GGNNCC	2 cut(s)	193, 1867
PspPI	GGNCC	4 cut(s)	181, 787, 1855, 2221
PsuI	RGATCY	1 cut(s)	1865
PsyI	GACNNNGTC	2 cut(s)	289, 311
PvuI	CGATCG	1 cut(s)	374
RruI	TCGCGA	1 cut(s)	440
RsaI	GTAC	4 cut(s)	823, 873, 2277, 2427
RsaNI	GTAC	4 cut(s)	822, 872, 2276, 2426
RseI	CAYNNNNRTG	1 cut(s)	1653
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	8 cut(s)	594, 1212, 1587, 1680, 1703, 1893, 2001, 2430
SatI	GCNGC	9 cut(s)	190, 281, 851, 1443, 1572, 1659, 1858, 1986, 2025
Sau96I	GGNCC	4 cut(s)	181, 787, 1855, 2221
SchI	GAGTC	4 cut(s)	280, 302, 620, 1517
ScrFI	CCNGG	3 cut(s)	1259, 1486, 1552
SfaNI	GCATC	8 cut(s)	637, 972, 1214, 1258, 1321, 1354, 1906, 2148
Sfr303I	CCGCGG	1 cut(s)	190
SfuI	TTCGAA	1 cut(s)	545
SgrBI	CCGCGG	1 cut(s)	190
SinI	GGWCC	2 cut(s)	787, 2221
SmiMI	CAYNNNNRTG	1 cut(s)	1653
SmlI	CTYRAG	6 cut(s)	227, 488, 608, 1432, 1691, 2429
SmoI	CTYRAG	6 cut(s)	227, 488, 608, 1432, 1691, 2429
SphI	GCATGC	1 cut(s)	1950
SspI	AATATT	1 cut(s)	2309
SspMI	CTAG	8 cut(s)	711, 1122, 1349, 1407, 1425, 1580, 1662, 2133
StyD4I	CCNGG	3 cut(s)	1257, 1484, 1550
StyI	CCWWGG	1 cut(s)	1533
TaaI	ACNGT	4 cut(s)	876, 1677, 2327, 2425
TaiI	ACGT	2 cut(s)	621, 1118
TatI	WGTACW	3 cut(s)	821, 2275, 2425
TauI	GCSGC	4 cut(s)	192, 283, 1661, 1860
TfiI	GAWTC	6 cut(s)	7, 959, 1105, 2018, 2395, 2474
Tru1I	TTAA	8 cut(s)	594, 1212, 1587, 1680, 1703, 1893, 2001, 2430
Tru9I	TTAA	8 cut(s)	594, 1212, 1587, 1680, 1703, 1893, 2001, 2430
TscAI	CASTG	6 cut(s)	902, 1027, 2072, 2332, 2346, 2428
TseFI	GTSAC	3 cut(s)	688, 1961, 2417
TseI	GCWGC	5 cut(s)	850, 1442, 1571, 1985, 2024
Tsp45I	GTSAC	3 cut(s)	688, 1961, 2417
TspDTI	ATGAA	5 cut(s)	1395, 2114, 2229, 2270, 2477
TspGWI	ACGGA	2 cut(s)	695, 2390
TspRI	CASTG	6 cut(s)	902, 1027, 2072, 2332, 2346, 2428
Tth111I	GACNNNGTC	2 cut(s)	289, 311
Vha464I	CTTAAG	1 cut(s)	2429
VpaK11BI	GGWCC	2 cut(s)	787, 2221
XapI	RAATTY	6 cut(s)	38, 403, 547, 1225, 1303, 2044
XbaI	TCTAGA	1 cut(s)	1348
XceI	RCATGY	9 cut(s)	454, 560, 925, 1243, 1746, 1839, 1950, 1985, 2511
XmnI	GAANNNNTTC	1 cut(s)	1109
XspI	CTAG	8 cut(s)	711, 1122, 1349, 1407, 1425, 1580, 1662, 2133
Zsp2I	ATGCAT	3 cut(s)	652, 1336, 1837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.