FvH4_6g46190

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
35278124 .. 35281972
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46190.t1

Sequence Viewer

Length: 1260 bp
ATGGTTCATAAAGCTGATCTGGTTATCATTGGCATCTCAGTTGGTGTAGCCCTTGGAATTTTGATAGCTTTACTCATATTTTTTGGAATAAGGTGGTACCAAAACCGTGCTAATCTTGGACAATGTGCTAATGAGCGTAGTTTAACAACTCTACCTATACGCACCAATGGCGTAGACGCAAGCATTGACCTTAGTGTATCTGTTTCAACTACCATACCTGTTCAAGGATCCGAGAAGGTTCAAAAAAGTTCTCCGCTCTCCTGGTGGAATAATCACAACAAAGATCCCTTTCCTTCTTCATCAGGCGTACCTAGATACTCTTATAAGGATGTACAGAAAGCTACGCAGAATTTCACAACCATTTTGGGACAAGGGGCTTTTGGTCCAGTCTATAAAGCAACGATGACTGCCGGAGAGGTAGTAGCTGTGAAGGTGCTTGCTTCAAATTCCAAGCAGGGAGAGAAAGAGTTCCAAACAGAGGTATCTCTGTTAGGAAGACTGCATCATCGAAATCTAGTGAACCTCGTAGGTTACTGTGTAGATAAAGGACAGCGTATGTTAATCTACGAGTTCATGAGTAATGGCAGCTTATCAAACCTTTTGTACAGTGAAGAACAACAAGTTTTGAGCTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCACATGGAATAGAGTACCTTCATGAAGGGGCAGCCCCACCAGTCATACATCGTGATTTAAAGTCTGCTAATATATTGTTAGACCGGTATATGAGAGCTAAGGTTGCTGATTTTGGTCTGTCTAAGGAAGAGGTGTTTGATGGTCGGAATTCTGGCCTCAAAGGTACCTATGGCTACATAGATCCGGAATACATATCTACAAACAAGTTCACAATGAAGAGTGACATTTACAGTTTTGGCATCATCATCTTTGAACTCATAACAGCCATCCACCCCCACCAAAATCTAATGGAATATGTTAACCTTGCTTCTATGGCTCCAGATGGTGTTGATGAAATCCTTGATAACAAGCTAGTTGGGGAATGCAACCTTGAGGAGGTGAGGAGGCTGGCTAAAATTGGTCACAGATGCTTACTCAAACTACCGAGAAAGCGGCCCTCTATTGGAGAGGTTTCTCAAGCTATATTGAAGATTAAACAGATGCGACTTGATAAAAGGGATACCATGTCGTTTGGAGGTGACGAATTTTCACGGGCCGTAAGCAGAATAGAGGTTCAGCAGGTGGAGCTGGTTAGGCTGGCCAGCATGAAAGAGTAA

Protein Analysis

420

Amino Acids

46.79

Weight (kDa)

8.19

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 118 - 374 2.8e-50 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 120 - 374 1.3e-47 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AarI CACCTGC 1 cut(s) 1213
Acc36I ACCTGC 1 cut(s) 1213
Acc65I GGTACC 2 cut(s) 96, 827
AccB1I GGYRCC 2 cut(s) 96, 827
AccBSI CCGCTC 1 cut(s) 256
AccI GTMKAC 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 847
AciI CCGC 2 cut(s) 254, 1096
AclWI GGATC 4 cut(s) 222, 235, 278, 839
AcoI YGGCCR 1 cut(s) 1242
AcsI RAATTY 5 cut(s) 57, 349, 445, 811, 1187
AfaI GTAC 6 cut(s) 98, 309, 333, 605, 680, 829
AfiI CCNNNNNNNGG 4 cut(s) 224, 478, 1039, 1106
AgeI ACCGGT 1 cut(s) 747
AgsI TTSAA 6 cut(s) 207, 224, 242, 444, 917, 1132
AjnI CCWGG 1 cut(s) 260
AlwI GGATC 4 cut(s) 222, 235, 278, 839
Aor13HI TCCGGA 1 cut(s) 847
AoxI GGCC 4 cut(s) 817, 1097, 1197, 1242
ApeKI GCWGC 3 cut(s) 585, 643, 695
ApoI RAATTY 5 cut(s) 57, 349, 445, 811, 1187
AsiGI ACCGGT 1 cut(s) 747
Asp700I GAANNNNTTC 1 cut(s) 467
Asp718I GGTACC 2 cut(s) 96, 827
AspS9I GGNCC 3 cut(s) 383, 1098, 1197
AsuHPI GGTGA 2 cut(s) 1054, 1193
AvaII GGWCC 1 cut(s) 383
BaeI ACNNNNGTAYC 2 cut(s) 465, 498
BalI TGGCCA 1 cut(s) 1244
BamHI GGATCC 1 cut(s) 227
BanI GGYRCC 2 cut(s) 96, 827
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 3 cut(s) 597, 630, 707
BccI CCATC 3 cut(s) 797, 938, 980
BceAI ACGGC 1 cut(s) 1184
BciT130I CCWGG 1 cut(s) 262
BciVI GTATCC 1 cut(s) 1156
BfaI CTAG 3 cut(s) 312, 515, 1016
BfuAI ACCTGC 1 cut(s) 1213
BfuI GTATCC 1 cut(s) 1156
BisI GCNGC 4 cut(s) 586, 644, 696, 1097
BlsI GCNGC 4 cut(s) 587, 645, 697, 1098
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 3 cut(s) 383, 1098, 1197
BmiI GGNNCC 4 cut(s) 98, 229, 829, 981
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 5 cut(s) 42, 511, 912, 1061, 1134
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 1055, 1104
BsaJI CCNNGG 1 cut(s) 52
BsaWI WCCGGW 2 cut(s) 747, 847
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 478, 1039, 1106
Bse118I RCCGGY 1 cut(s) 747
Bse1I ACTGG 2 cut(s) 386, 704
BseAI TCCGGA 1 cut(s) 847
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 3 cut(s) 334, 640, 930
BseLI CCNNNNNNNGG 4 cut(s) 224, 478, 1039, 1106
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 386, 704
BseRI GAGGAG 2 cut(s) 1052, 1060
BseXI GCAGC 3 cut(s) 597, 630, 707
BseYI CCCAGC 1 cut(s) 630
BshFI GGCC 4 cut(s) 819, 1099, 1199, 1244
BshNI GGYRCC 2 cut(s) 96, 827
BshTI ACCGGT 1 cut(s) 747
BsiSI CCGG 3 cut(s) 411, 748, 848
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 4 cut(s) 224, 478, 1039, 1106
BsmFI GGGAC 1 cut(s) 381
BsmI GAATGC 1 cut(s) 1031
BsnI GGCC 4 cut(s) 819, 1099, 1199, 1244
Bsp13I TCCGGA 1 cut(s) 847
Bsp1407I TGTACA 2 cut(s) 331, 603
Bsp143I GATC 4 cut(s) 16, 227, 283, 844
BspACI CCGC 2 cut(s) 254, 1096
BspANI GGCC 4 cut(s) 819, 1099, 1199, 1244
BspCNI CTCAG 1 cut(s) 50
BspEI TCCGGA 1 cut(s) 847
BspHI TCATGA 2 cut(s) 573, 685
BspLI GGNNCC 4 cut(s) 98, 229, 829, 981
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 4 cut(s) 222, 235, 278, 839
BspT107I GGYRCC 2 cut(s) 96, 827
BsrBI CCGCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 747
BsrGI TGTACA 2 cut(s) 331, 603
BsrI ACTGG 2 cut(s) 386, 704
BssAI RCCGGY 1 cut(s) 747
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 4 cut(s) 16, 227, 283, 844
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 4 cut(s) 107, 536, 608, 896
Bst6I CTCTTC 2 cut(s) 786, 875
BstAUI TGTACA 2 cut(s) 331, 603
BstC8I GCNNGC 5 cut(s) 181, 438, 1053, 1242, 1246
BstDEI CTNAG 4 cut(s) 37, 191, 762, 786
BstENI CCTNNNNNAGG 2 cut(s) 222, 1037
BstF5I GGATG 3 cut(s) 334, 640, 930
BstKTI GATC 4 cut(s) 19, 230, 286, 847
BstMBI GATC 4 cut(s) 16, 227, 283, 844
BstMWI GCNNNNNNNGC 5 cut(s) 168, 767, 977, 1228, 1237
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 597, 630, 707
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 3 cut(s) 227, 283, 844
BstYI RGATCY 3 cut(s) 227, 283, 844
BsuI GTATCC 1 cut(s) 1156
BsuRI GGCC 4 cut(s) 819, 1099, 1199, 1244
BtsCI GGATG 3 cut(s) 334, 640, 930
BtsIMutI CAGTG 1 cut(s) 613
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 5 cut(s) 181, 438, 1053, 1242, 1246
CciI TCATGA 2 cut(s) 573, 685
Cfr10I RCCGGY 1 cut(s) 747
Cfr13I GGNCC 3 cut(s) 383, 1098, 1197
CseI GACGC 1 cut(s) 185
Csp6I GTAC 6 cut(s) 97, 308, 332, 604, 679, 828
CspAI ACCGGT 1 cut(s) 747
CviAII CATG 5 cut(s) 574, 668, 686, 1168, 1249
CviQI GTAC 6 cut(s) 97, 308, 332, 604, 679, 828
DdeI CTNAG 4 cut(s) 37, 191, 762, 786
DpnI GATC 4 cut(s) 18, 229, 285, 846
DpnII GATC 4 cut(s) 16, 227, 283, 844
DraI TTTAAA 1 cut(s) 723
EaeI YGGCCR 1 cut(s) 1242
Eam1104I CTCTTC 2 cut(s) 786, 875
EarI CTCTTC 2 cut(s) 786, 875
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 383
EcoNI CCTNNNNNAGG 2 cut(s) 222, 1037
EcoRI GAATTC 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 5 cut(s) 577, 671, 689, 1171, 1252
FaqI GGGAC 1 cut(s) 381
FatI CATG 5 cut(s) 573, 667, 685, 1167, 1248
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 586, 644, 696, 1097
FokI GGATG 3 cut(s) 341, 647, 917
Fsp4HI GCNGC 4 cut(s) 586, 644, 696, 1097
FspBI CTAG 3 cut(s) 312, 515, 1016
GluI GCNGC 4 cut(s) 586, 644, 696, 1097
GsaI CCCAGC 1 cut(s) 634
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 4 cut(s) 819, 1099, 1199, 1244
HapII CCGG 3 cut(s) 411, 748, 848
HgaI GACGC 1 cut(s) 185
Hin1II CATG 5 cut(s) 577, 671, 689, 1171, 1252
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HpaI GTTAAC 1 cut(s) 964
HpaII CCGG 3 cut(s) 411, 748, 848
HphI GGTGA 2 cut(s) 1054, 1193
Hpy166II GTNNAC 4 cut(s) 175, 520, 873, 964
Hpy188I TCNGA 2 cut(s) 232, 810
Hpy188III TCNNGA 6 cut(s) 574, 656, 686, 716, 848, 983
Hpy8I GTNNAC 4 cut(s) 175, 520, 873, 964
HpyAV CCTTC 5 cut(s) 229, 303, 424, 683, 692
HpyCH4III ACNGT 4 cut(s) 107, 536, 608, 896
HpyCH4V TGCA 3 cut(s) 502, 646, 1029
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 767, 977, 1228, 1237
HpyF3I CTNAG 4 cut(s) 37, 191, 762, 786
Hsp92II CATG 5 cut(s) 577, 671, 689, 1171, 1252
Kpn2I TCCGGA 1 cut(s) 847
KpnI GGTACC 2 cut(s) 100, 831
KspAI GTTAAC 1 cut(s) 964
Kzo9I GATC 4 cut(s) 16, 227, 283, 844
LmnI GCTCC 2 cut(s) 985, 1228
Lsp1109I GCAGC 3 cut(s) 597, 630, 707
LweI GCATC 5 cut(s) 42, 511, 912, 1061, 1134
MaeI CTAG 3 cut(s) 312, 515, 1016
MaeIII GTNAC 4 cut(s) 530, 884, 1064, 1181
MalI GATC 4 cut(s) 18, 229, 285, 846
MbiI CCGCTC 1 cut(s) 256
MboI GATC 4 cut(s) 16, 227, 283, 844
MboII GAAGA 6 cut(s) 288, 507, 623, 803, 892, 1144
MflI RGATCY 3 cut(s) 227, 283, 844
MlsI TGGCCA 1 cut(s) 1244
MluCI AATT 7 cut(s) 57, 349, 445, 648, 811, 1059, 1187
MluNI TGGCCA 1 cut(s) 1244
MmeI TCCRAC 1 cut(s) 788
Mox20I TGGCCA 1 cut(s) 1244
MroI TCCGGA 1 cut(s) 847
MroXI GAANNNNTTC 1 cut(s) 467
MscI TGGCCA 1 cut(s) 1244
MseI TTAA 5 cut(s) 143, 560, 722, 963, 1137
Msp20I TGGCCA 1 cut(s) 1244
MspI CCGG 3 cut(s) 411, 748, 848
MspR9I CCNGG 1 cut(s) 262
Mva1269I GAATGC 1 cut(s) 1031
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 5 cut(s) 168, 767, 977, 1228, 1237
NdeII GATC 4 cut(s) 16, 227, 283, 844
NlaIII CATG 5 cut(s) 577, 671, 689, 1171, 1252
NlaIV GGNNCC 4 cut(s) 98, 229, 829, 981
NmuCI GTSAC 3 cut(s) 884, 1064, 1181
PagI TCATGA 2 cut(s) 573, 685
PaqCI CACCTGC 1 cut(s) 1213
PctI GAATGC 1 cut(s) 1031
PdmI GAANNNNTTC 1 cut(s) 467
PinAI ACCGGT 1 cut(s) 747
PkrI GCNGC 4 cut(s) 587, 645, 697, 1098
PsiI TTATAA 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 630
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 4 cut(s) 98, 229, 829, 981
PspPI GGNCC 3 cut(s) 383, 1098, 1197
PsuI RGATCY 3 cut(s) 227, 283, 844
RsaI GTAC 6 cut(s) 98, 309, 333, 605, 680, 829
RsaNI GTAC 6 cut(s) 97, 308, 332, 604, 679, 828
SaqAI TTAA 5 cut(s) 143, 560, 722, 963, 1137
SatI GCNGC 4 cut(s) 586, 644, 696, 1097
Sau3AI GATC 4 cut(s) 16, 227, 283, 844
Sau96I GGNCC 3 cut(s) 383, 1098, 1197
ScrFI CCNGG 1 cut(s) 262
SfaNI GCATC 5 cut(s) 42, 511, 912, 1061, 1134
SinI GGWCC 1 cut(s) 383
SmlI CTYRAG 2 cut(s) 1034, 1119
SmoI CTYRAG 2 cut(s) 1034, 1119
Sse9I AATT 7 cut(s) 57, 349, 445, 648, 811, 1059, 1187
SsiI CCGC 2 cut(s) 254, 1096
SspMI CTAG 3 cut(s) 312, 515, 1016
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 4 cut(s) 107, 536, 608, 896
TaqI TCGA 1 cut(s) 508
TasI AATT 7 cut(s) 57, 349, 445, 648, 811, 1059, 1187
TatI WGTACW 2 cut(s) 331, 603
TauI GCSGC 1 cut(s) 1099
Tru1I TTAA 5 cut(s) 143, 560, 722, 963, 1137
Tru9I TTAA 5 cut(s) 143, 560, 722, 963, 1137
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 3 cut(s) 884, 1064, 1181
TseI GCWGC 3 cut(s) 585, 643, 695
Tsp45I GTSAC 3 cut(s) 884, 1064, 1181
TspDTI ATGAA 7 cut(s) 288, 562, 651, 674, 702, 893, 1011
TspRI CASTG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 383
XagI CCTNNNNNAGG 2 cut(s) 222, 1037
XapI RAATTY 5 cut(s) 57, 349, 445, 811, 1187
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 3 cut(s) 312, 515, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.