Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023927.1

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Reverse (-)

686 .. 3128

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023927.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

atggttaatagaggtgatctggttatcattggcatctctgctggtgtagcccttggaattttgatagctgcactcatatttttcggaataaggtggtaccaaaagcatgccaatcttcgacgatgtgctaatgagcgtagtttaacaactcttcctatacgcacaaatggcttaggcacaagcatcgaccttagtgtatctctttcaactaacatacctattcaaggatccgagaaggttaaaaaaagttctccactctcctggtggaataatcacaacaaagaacgatttccttcagcatcaggcgtacctagatactcttacaaggatgtgcagaaagctacacagaatttcacaacaattttaggacaaggggcttttggtccagtatataaagcaacaatgcgtgctggagaggtagtagctgtgaaggtgcttgcttcagattccaagcagggagagaaagagttccaaacagaggtatctctgttaggaagactgcatcatcgaaatctagtgaacctcgtaggttactgtgtagataaaggacagcgtatgttaatctatgagttcatgagtaatggcagcttatcaaaccttctgtacagtgaagaacaacaggttttgagctgggatgaaaggctgcaaattgctcttgatatttcgcatggaatagagtaccttcatgaaggggcagccccaccagtcatacatcgtgatttaaagtccgctaatatattgttagaccaatcaatgagagctaaggttgctgattttggactgtctaaggaagaggtgtttgatggtcggaattcaggcctcaagggtacctatggctacatagatccggaatacatgtctacaaacaagttcacaatgaagagtgacatttacagttttggggtcatcatctttgaactcataacagccatccaccctcaccaaaacctaatggaatatgttaatcttgcttctatggctccagatggtgttgacgaaatacttgataacaagctagttggggaatgcaaccttgaagaagtgaggaggctggctaaaattgctcacagatgcttactgaaattaccgagaaagcggccttccatcggagaaatttcacaggccatattgaagattaaacagatgcgtcttgataaaagggataccatgtcttttgcaggtgaagaattttcacgggcagtaagcagaatagaggttcagcaggtggagctggttaggctggccagcacaaaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

419

Amino Acids

46.9

Weight (kDa)

8.94

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1169, 1213
Acc36I	ACCTGC	2 cut(s)	1169, 1213
Acc65I	GGTACC	2 cut(s)	96, 827
AccB1I	GGYRCC	2 cut(s)	96, 827
AccI	GTMKAC	1 cut(s)	860
AccIII	TCCGGA	1 cut(s)	847
AciI	CCGC	2 cut(s)	729, 1096
AclWI	GGATC	3 cut(s)	222, 235, 839
AcoI	YGGCCR	1 cut(s)	1242
AcsI	RAATTY	5 cut(s)	57, 349, 811, 1113, 1187
AcuI	CTGAAG	2 cut(s)	279, 426
AfaI	GTAC	5 cut(s)	98, 309, 605, 680, 829
AfiI	CCNNNNNNNGG	3 cut(s)	224, 478, 1106
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	5 cut(s)	207, 224, 917, 1037, 1132
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	8 cut(s)	68, 341, 425, 588, 630, 761, 1015, 1231
AluI	AGCT	8 cut(s)	68, 341, 425, 588, 630, 761, 1015, 1231
AlwI	GGATC	3 cut(s)	222, 235, 839
Aor13HI	TCCGGA	1 cut(s)	847
AoxI	GGCC	4 cut(s)	817, 1097, 1122, 1242
ApeKI	GCWGC	4 cut(s)	68, 585, 643, 695
ApoI	RAATTY	5 cut(s)	57, 349, 811, 1113, 1187
Asp700I	GAANNNNTTC	2 cut(s)	288, 467
Asp718I	GGTACC	2 cut(s)	96, 827
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	3 cut(s)	26, 932, 1193
AvaII	GGWCC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BalI	TGGCCA	1 cut(s)	1244
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	2 cut(s)	96, 827
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	4 cut(s)	55, 597, 630, 707
BccI	CCATC	4 cut(s)	797, 938, 980, 1112
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	1156
BfaI	CTAG	3 cut(s)	312, 515, 1016
BfuAI	ACCTGC	2 cut(s)	1169, 1213
BfuI	GTATCC	1 cut(s)	1156
BisI	GCNGC	5 cut(s)	69, 586, 644, 696, 1097
BlsI	GCNGC	5 cut(s)	70, 587, 645, 697, 1098
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	4 cut(s)	98, 229, 829, 981
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	6 cut(s)	42, 192, 308, 511, 1061, 1134
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	2 cut(s)	432, 966
Bpu10I	CCTNAGC	2 cut(s)	172, 762
BpuEI	CTTGAG	1 cut(s)	806
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	847
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 478, 1106
Bse1I	ACTGG	2 cut(s)	386, 704
BseAI	TCCGGA	1 cut(s)	847
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	3 cut(s)	334, 640, 930
BseLI	CCNNNNNNNGG	3 cut(s)	224, 478, 1106
BseNI	ACTGG	2 cut(s)	386, 704
BseRI	GAGGAG	1 cut(s)	1060
BseXI	GCAGC	4 cut(s)	55, 597, 630, 707
BseYI	CCCAGC	1 cut(s)	630
BsgI	GTGCAG	2 cut(s)	54, 353
BshFI	GGCC	4 cut(s)	819, 1099, 1124, 1244
BshNI	GGYRCC	2 cut(s)	96, 827
BsiSI	CCGG	1 cut(s)	848
BslI	CCNNNNNNNGG	3 cut(s)	224, 478, 1106
BsmI	GAATGC	1 cut(s)	1031
BsnI	GGCC	4 cut(s)	819, 1099, 1124, 1244
Bsp13I	TCCGGA	1 cut(s)	847
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	16, 227, 844
BspACI	CCGC	2 cut(s)	729, 1096
BspANI	GGCC	4 cut(s)	819, 1099, 1124, 1244
BspEI	TCCGGA	1 cut(s)	847
BspHI	TCATGA	2 cut(s)	573, 685
BspLI	GGNNCC	4 cut(s)	98, 229, 829, 981
BspMI	ACCTGC	2 cut(s)	1169, 1213
BspPI	GGATC	3 cut(s)	222, 235, 839
BspT107I	GGYRCC	2 cut(s)	96, 827
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	386, 704
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	16, 227, 844
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	4 cut(s)	536, 608, 783, 896
Bst6I	CTCTTC	3 cut(s)	156, 786, 875
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	6 cut(s)	108, 408, 438, 1053, 1242, 1246
BstDEI	CTNAG	4 cut(s)	172, 191, 762, 786
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	334, 640, 930
BstKTI	GATC	3 cut(s)	19, 230, 847
BstMBI	GATC	3 cut(s)	16, 227, 844
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 168, 767, 977, 1061, 1228, 1237
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	2 cut(s)	110, 859
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	4 cut(s)	55, 597, 630, 707
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	227, 844
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	2 cut(s)	227, 844
BsuI	GTATCC	1 cut(s)	1156
BsuRI	GGCC	4 cut(s)	819, 1099, 1124, 1244
BtsCI	GGATG	3 cut(s)	334, 640, 930
BtsIMutI	CAGTG	1 cut(s)	613
BveI	ACCTGC	2 cut(s)	1169, 1213
Cac8I	GCNNGC	6 cut(s)	108, 408, 438, 1053, 1242, 1246
CciI	TCATGA	2 cut(s)	573, 685
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	1136
Csp6I	GTAC	5 cut(s)	97, 308, 604, 679, 828
CviAII	CATG	6 cut(s)	107, 574, 668, 686, 856, 1168
CviQI	GTAC	5 cut(s)	97, 308, 604, 679, 828
DdeI	CTNAG	4 cut(s)	172, 191, 762, 786
DpnI	GATC	3 cut(s)	18, 229, 846
DpnII	GATC	3 cut(s)	16, 227, 844
DraI	TTTAAA	1 cut(s)	723
EaeI	YGGCCR	1 cut(s)	1242
Eam1104I	CTCTTC	3 cut(s)	156, 786, 875
EarI	CTCTTC	3 cut(s)	156, 786, 875
Eco130I	CCWWGG	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	279, 426
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	6 cut(s)	110, 577, 671, 689, 859, 1171
FatI	CATG	6 cut(s)	106, 573, 667, 685, 855, 1167
FblI	GTMKAC	1 cut(s)	860
Fnu4HI	GCNGC	5 cut(s)	69, 586, 644, 696, 1097
FokI	GGATG	3 cut(s)	341, 647, 917
Fsp4HI	GCNGC	5 cut(s)	69, 586, 644, 696, 1097
FspBI	CTAG	3 cut(s)	312, 515, 1016
GluI	GCNGC	5 cut(s)	69, 586, 644, 696, 1097
GsaI	CCCAGC	1 cut(s)	634
GsuI	CTGGAG	2 cut(s)	432, 966
HaeIII	GGCC	4 cut(s)	819, 1099, 1124, 1244
HapII	CCGG	1 cut(s)	848
HgaI	GACGC	1 cut(s)	1136
Hin1II	CATG	6 cut(s)	110, 577, 671, 689, 859, 1171
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	1 cut(s)	848
HphI	GGTGA	3 cut(s)	26, 932, 1193
Hpy166II	GTNNAC	4 cut(s)	520, 861, 873, 994
Hpy188I	TCNGA	5 cut(s)	86, 232, 445, 810, 1109
Hpy188III	TCNNGA	7 cut(s)	574, 656, 686, 716, 848, 983, 1151
Hpy8I	GTNNAC	4 cut(s)	520, 861, 873, 994
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	7 cut(s)	229, 303, 424, 608, 683, 692, 1110
HpyCH4III	ACNGT	4 cut(s)	536, 608, 783, 896
HpyCH4V	TGCA	6 cut(s)	71, 334, 502, 646, 1029, 1178
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 168, 767, 977, 1061, 1228, 1237
HpyF3I	CTNAG	4 cut(s)	172, 191, 762, 786
Hsp92II	CATG	6 cut(s)	110, 577, 671, 689, 859, 1171
Kpn2I	TCCGGA	1 cut(s)	847
KpnI	GGTACC	2 cut(s)	100, 831
Kzo9I	GATC	3 cut(s)	16, 227, 844
LmnI	GCTCC	2 cut(s)	985, 1228
Lsp1109I	GCAGC	4 cut(s)	55, 597, 630, 707
LweI	GCATC	6 cut(s)	42, 192, 308, 511, 1061, 1134
MaeI	CTAG	3 cut(s)	312, 515, 1016
MaeIII	GTNAC	2 cut(s)	530, 884
MalI	GATC	3 cut(s)	18, 229, 846
MboI	GATC	3 cut(s)	16, 227, 844
MboII	GAAGA	9 cut(s)	107, 143, 507, 623, 803, 892, 1049, 1144, 1196
MflI	RGATCY	2 cut(s)	227, 844
MlsI	TGGCCA	1 cut(s)	1244
MluCI	AATT	9 cut(s)	57, 349, 360, 648, 811, 1059, 1082, 1113, 1187
MluNI	TGGCCA	1 cut(s)	1244
MmeI	TCCRAC	1 cut(s)	788
Mox20I	TGGCCA	1 cut(s)	1244
MroI	TCCGGA	1 cut(s)	847
MroXI	GAANNNNTTC	2 cut(s)	288, 467
MscI	TGGCCA	1 cut(s)	1244
MseI	TTAA	7 cut(s)	6, 143, 240, 560, 722, 963, 1137
Msp20I	TGGCCA	1 cut(s)	1244
MspI	CCGG	1 cut(s)	848
MspR9I	CCNGG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	1031
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	7 cut(s)	47, 168, 767, 977, 1061, 1228, 1237
NdeII	GATC	3 cut(s)	16, 227, 844
NlaIII	CATG	6 cut(s)	110, 577, 671, 689, 859, 1171
NlaIV	GGNNCC	4 cut(s)	98, 229, 829, 981
NmuCI	GTSAC	1 cut(s)	884
NspI	RCATGY	2 cut(s)	110, 859
PaeI	GCATGC	1 cut(s)	110
PagI	TCATGA	2 cut(s)	573, 685
PaqCI	CACCTGC	2 cut(s)	1169, 1213
PceI	AGGCCT	1 cut(s)	819
PciI	ACATGT	1 cut(s)	855
PctI	GAATGC	1 cut(s)	1031
PdmI	GAANNNNTTC	2 cut(s)	288, 467
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	5 cut(s)	70, 587, 645, 697, 1098
PscI	ACATGT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	98, 229, 829, 981
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	227, 844
RsaI	GTAC	5 cut(s)	98, 309, 605, 680, 829
RsaNI	GTAC	5 cut(s)	97, 308, 604, 679, 828
SaqAI	TTAA	7 cut(s)	6, 143, 240, 560, 722, 963, 1137
SatI	GCNGC	5 cut(s)	69, 586, 644, 696, 1097
Sau3AI	GATC	3 cut(s)	16, 227, 844
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	262
SfaNI	GCATC	6 cut(s)	42, 192, 308, 511, 1061, 1134
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	9 cut(s)	57, 349, 360, 648, 811, 1059, 1082, 1113, 1187
SseBI	AGGCCT	1 cut(s)	819
SsiI	CCGC	2 cut(s)	729, 1096
SspMI	CTAG	3 cut(s)	312, 515, 1016
StuI	AGGCCT	1 cut(s)	819
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	4 cut(s)	536, 608, 783, 896
TaqI	TCGA	3 cut(s)	118, 186, 508
TasI	AATT	9 cut(s)	57, 349, 360, 648, 811, 1059, 1082, 1113, 1187
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	1099
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	7 cut(s)	6, 143, 240, 560, 722, 963, 1137
Tru9I	TTAA	7 cut(s)	6, 143, 240, 560, 722, 963, 1137
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	884
TseI	GCWGC	4 cut(s)	68, 585, 643, 695
Tsp45I	GTSAC	1 cut(s)	884
TspDTI	ATGAA	5 cut(s)	562, 651, 674, 702, 893
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	222
XapI	RAATTY	5 cut(s)	57, 349, 811, 1113, 1187
XceI	RCATGY	2 cut(s)	110, 859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	860
XmnI	GAANNNNTTC	2 cut(s)	288, 467
XspI	CTAG	3 cut(s)	312, 515, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.