Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Forward (+)

75711817 .. 75715636

Gene Structure 3820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTTTGTTGGTTTTGGTCTTTCTTGGCTTTTGAAAAGTCTCAAAAGGACTCAAACACAAGTGGCCAATTTAGCAAAGAGTTGCATATGGCGGAAGCAACTAAGTAAAACCAAGGCAGGCACCTTTTTCTTTTGGGTTGTAAGATATTCTGCGGTGTTTTTGGCCTGCAAGATGTTCTCATTGCTTGAATATCAGAAGACGCCAAAGAATGGCACAAGCATCGACCTTAGTGTATCTCTTTCAACTAACATACCTATCCAAGGATCCGAGAAGGTTAAAAAAAGTTCTCCACTCTCCTGGTGGAATAATCACAAAAAAGACCGATTTCCTTCTGCATCAGGCGTACTTAGATACTCTCACAAGGATGTGCAGAAAGCTACACAGAATTTCACAACAATTTTAGGACAAGGGGCTTTTGGTCCAGTATATAAAGCAACAATGCCTGCTGGAGAGGTAGTAGCTGTGAAGGTGCTTGCTTCAGATTCCAAGCAGGGAGAGAAAGAGTTCCACACAGAGGTATCTCTGTTAGGAAGACTGCATCATCGAAATCTAGTGAACCTCGTAGGTTACTGTGTAGATAAAGGACAGCGTATGTTAATCTATGAGTTCATGAGTAATGGCAGCTTATCAAACCTTCTGTACAGTGAAGAACAACAGGTTTTGAGCTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCGCATGGAATAGAGTACCTTCATGAAGGGGCAGCCCCACCAGTCATACATCGTGATTTAAAGTCTGCTAATATATTGTTAGACCAATCAATGAGAGCTAAGGTTGCTGATTTTGGACTGTCTAAGGAAGAGGGGTTTGATGGTCGGAATTCTGGCCTCAAAGGTACCTATGGCTACATAGATCCGGAATACATGTCAACAAACAAGTTCACAATGAAGAGTGACATTTACAGTTTTGGAATCATCATCTTTGAACTCATAACAGCCATCCACCCTCACCAAAACCTAATGGAATATGTTAATCTCGCTTCTATGGCTCCAGATGGTGTTGACGAAATACTTGATAACAAGCTAGTTGGGGAATGCAACCTTGAAGAAGTGAGGAGGCTGGCTAAAATTGCTCACAGATGCTTACTGAAATTACCGAGAAAGCGGCCTTCCATCGGAGAGATTTCACAGGCCATATTGAAGATTAAACAGATGCGTCTTGATAAAAGGGATACCATGTCTTTTGCAGGTGAAGAATTTTCACGGGCAGTAAGCAGAATAGAGGTTCAGCAGGTGGAGCTGGTTAGGCTGGCCAGCACAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

432

Amino Acids

48.61

Weight (kDa)

9.28

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	130 - 387	6.2e-51	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	132 - 386	7.2e-48	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1205, 1249
Acc36I	ACCTGC	2 cut(s)	1205, 1249
Acc65I	GGTACC	1 cut(s)	863
AccB1I	GGYRCC	2 cut(s)	119, 863
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	3 cut(s)	91, 152, 1132
AclWI	GGATC	3 cut(s)	258, 271, 875
AcoI	YGGCCR	2 cut(s)	63, 1278
AcsI	RAATTY	3 cut(s)	385, 847, 1223
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	4 cut(s)	345, 641, 716, 865
AfiI	CCNNNNNNNGG	4 cut(s)	209, 260, 514, 1142
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	6 cut(s)	34, 188, 243, 953, 1073, 1168
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	7 cut(s)	377, 461, 624, 666, 797, 1051, 1267
AluI	AGCT	7 cut(s)	377, 461, 624, 666, 797, 1051, 1267
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	3 cut(s)	258, 271, 875
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	6 cut(s)	63, 162, 853, 1133, 1158, 1278
ApeKI	GCWGC	3 cut(s)	621, 679, 731
ApoI	RAATTY	3 cut(s)	385, 847, 1223
Asp700I	GAANNNNTTC	1 cut(s)	503
Asp718I	GGTACC	1 cut(s)	863
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	968, 1229
AvaII	GGWCC	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BalI	TGGCCA	2 cut(s)	65, 1280
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	2 cut(s)	119, 863
BbsI	GAAGAC	2 cut(s)	203, 538
BbvI	GCAGC	3 cut(s)	633, 666, 743
BccI	CCATC	4 cut(s)	833, 974, 1016, 1148
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	298
BciVI	GTATCC	1 cut(s)	1192
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	551, 1052
BfuAI	ACCTGC	2 cut(s)	1205, 1249
BfuI	GTATCC	1 cut(s)	1192
BisI	GCNGC	4 cut(s)	622, 680, 732, 1133
BlsI	GCNGC	4 cut(s)	623, 681, 733, 1134
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	4 cut(s)	121, 265, 865, 1017
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	5 cut(s)	228, 344, 547, 1097, 1170
BpiI	GAAGAC	2 cut(s)	203, 538
BpmI	CTGGAG	2 cut(s)	468, 1002
Bpu10I	CCTNAGC	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	111, 259
BsaWI	WCCGGW	1 cut(s)	883
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 260, 514, 1142
Bse1I	ACTGG	2 cut(s)	422, 740
Bse3DI	GCAATG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	883
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	111, 259
BseGI	GGATG	3 cut(s)	370, 676, 966
BseLI	CCNNNNNNNGG	4 cut(s)	209, 260, 514, 1142
BseMI	GCAATG	1 cut(s)	179
BseNI	ACTGG	2 cut(s)	422, 740
BseRI	GAGGAG	1 cut(s)	1096
BseXI	GCAGC	3 cut(s)	633, 666, 743
BseYI	CCCAGC	1 cut(s)	666
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	6 cut(s)	65, 164, 855, 1135, 1160, 1280
BshNI	GGYRCC	2 cut(s)	119, 863
BsiSI	CCGG	1 cut(s)	884
BslI	CCNNNNNNNGG	4 cut(s)	209, 260, 514, 1142
BsmAI	GTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	1067
BsnI	GGCC	6 cut(s)	65, 164, 855, 1135, 1160, 1280
Bsp13I	TCCGGA	1 cut(s)	883
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	2 cut(s)	263, 880
BspACI	CCGC	3 cut(s)	91, 152, 1132
BspANI	GGCC	6 cut(s)	65, 164, 855, 1135, 1160, 1280
BspEI	TCCGGA	1 cut(s)	883
BspHI	TCATGA	2 cut(s)	609, 721
BspLI	GGNNCC	4 cut(s)	121, 265, 865, 1017
BspMI	ACCTGC	2 cut(s)	1205, 1249
BspPI	GGATC	3 cut(s)	258, 271, 875
BspT107I	GGYRCC	2 cut(s)	119, 863
BsrDI	GCAATG	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	422, 740
BssECI	CCNNGG	2 cut(s)	111, 259
BssMI	GATC	2 cut(s)	263, 880
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	111, 259
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	4 cut(s)	572, 644, 819, 932
Bst6I	CTCTTC	2 cut(s)	822, 911
BstACI	GRCGYC	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	639
BstC8I	GCNNGC	7 cut(s)	118, 166, 444, 474, 1089, 1278, 1282
BstDEI	CTNAG	5 cut(s)	101, 227, 347, 798, 822
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	3 cut(s)	370, 676, 966
BstKTI	GATC	2 cut(s)	266, 883
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	263, 880
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 803, 1013, 1097, 1264, 1273
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	633, 666, 743
BstV2I	GAAGAC	2 cut(s)	203, 538
BstX2I	RGATCY	2 cut(s)	263, 880
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	2 cut(s)	263, 880
BsuI	GTATCC	1 cut(s)	1192
BsuRI	GGCC	6 cut(s)	65, 164, 855, 1135, 1160, 1280
BtsCI	GGATG	3 cut(s)	370, 676, 966
BtsIMutI	CAGTG	1 cut(s)	649
BveI	ACCTGC	2 cut(s)	1205, 1249
Cac8I	GCNNGC	7 cut(s)	118, 166, 444, 474, 1089, 1278, 1282
CciI	TCATGA	2 cut(s)	609, 721
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	2 cut(s)	208, 1172
Csp6I	GTAC	4 cut(s)	344, 640, 715, 864
CviAII	CATG	5 cut(s)	610, 704, 722, 892, 1204
CviQI	GTAC	4 cut(s)	344, 640, 715, 864
DdeI	CTNAG	5 cut(s)	101, 227, 347, 798, 822
DpnI	GATC	2 cut(s)	265, 882
DpnII	GATC	2 cut(s)	263, 880
DraI	TTTAAA	1 cut(s)	759
EaeI	YGGCCR	2 cut(s)	63, 1278
Eam1104I	CTCTTC	2 cut(s)	822, 911
EarI	CTCTTC	2 cut(s)	822, 911
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	111, 259
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	2 cut(s)	111, 259
ErhI	CCWWGG	2 cut(s)	111, 259
FaeI	CATG	5 cut(s)	613, 707, 725, 895, 1207
FatI	CATG	5 cut(s)	609, 703, 721, 891, 1203
FauNDI	CATATG	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	622, 680, 732, 1133
FokI	GGATG	3 cut(s)	377, 683, 953
Fsp4HI	GCNGC	4 cut(s)	622, 680, 732, 1133
FspBI	CTAG	2 cut(s)	551, 1052
GluI	GCNGC	4 cut(s)	622, 680, 732, 1133
GsaI	CCCAGC	1 cut(s)	670
GsuI	CTGGAG	2 cut(s)	468, 1002
HaeIII	GGCC	6 cut(s)	65, 164, 855, 1135, 1160, 1280
HapII	CCGG	1 cut(s)	884
HgaI	GACGC	2 cut(s)	208, 1172
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	613, 707, 725, 895, 1207
HincII	GTYRAC	2 cut(s)	897, 1030
HindII	GTYRAC	2 cut(s)	897, 1030
HinfI	GANTC	3 cut(s)	49, 482, 939
HpaII	CCGG	1 cut(s)	884
HphI	GGTGA	2 cut(s)	968, 1229
Hpy166II	GTNNAC	4 cut(s)	556, 897, 909, 1030
Hpy188I	TCNGA	5 cut(s)	195, 268, 481, 846, 1145
Hpy188III	TCNNGA	7 cut(s)	610, 692, 722, 752, 884, 1019, 1187
Hpy8I	GTNNAC	4 cut(s)	556, 897, 909, 1030
HpyAV	CCTTC	7 cut(s)	265, 339, 460, 644, 719, 728, 1146
HpyCH4III	ACNGT	4 cut(s)	572, 644, 819, 932
HpyCH4V	TGCA	8 cut(s)	84, 168, 335, 370, 538, 682, 1065, 1214
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 803, 1013, 1097, 1264, 1273
HpyF3I	CTNAG	5 cut(s)	101, 227, 347, 798, 822
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	5 cut(s)	613, 707, 725, 895, 1207
Kpn2I	TCCGGA	1 cut(s)	883
KpnI	GGTACC	1 cut(s)	867
Kzo9I	GATC	2 cut(s)	263, 880
LmnI	GCTCC	2 cut(s)	1021, 1264
Lsp1109I	GCAGC	3 cut(s)	633, 666, 743
LweI	GCATC	5 cut(s)	228, 344, 547, 1097, 1170
MaeI	CTAG	2 cut(s)	551, 1052
MaeIII	GTNAC	2 cut(s)	566, 920
MalI	GATC	2 cut(s)	265, 882
MboI	GATC	2 cut(s)	263, 880
MboII	GAAGA	8 cut(s)	208, 543, 659, 839, 928, 1085, 1180, 1232
MflI	RGATCY	2 cut(s)	263, 880
MlsI	TGGCCA	2 cut(s)	65, 1280
MluCI	AATT	8 cut(s)	67, 385, 396, 684, 847, 1095, 1118, 1223
MluNI	TGGCCA	2 cut(s)	65, 1280
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	824
MnlI	CCTC	9 cut(s)	445, 508, 569, 823, 866, 984, 1074, 1077, 1243
Mox20I	TGGCCA	2 cut(s)	65, 1280
MroI	TCCGGA	1 cut(s)	883
MroXI	GAANNNNTTC	1 cut(s)	503
MscI	TGGCCA	2 cut(s)	65, 1280
MseI	TTAA	5 cut(s)	276, 596, 758, 999, 1173
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	2 cut(s)	65, 1280
MspI	CCGG	1 cut(s)	884
MspR9I	CCNGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	1067
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	6 cut(s)	71, 803, 1013, 1097, 1264, 1273
NdeI	CATATG	1 cut(s)	86
NdeII	GATC	2 cut(s)	263, 880
NlaIII	CATG	5 cut(s)	613, 707, 725, 895, 1207
NlaIV	GGNNCC	4 cut(s)	121, 265, 865, 1017
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	1 cut(s)	895
PagI	TCATGA	2 cut(s)	609, 721
PaqCI	CACCTGC	2 cut(s)	1205, 1249
PciI	ACATGT	1 cut(s)	891
PctI	GAATGC	1 cut(s)	1067
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	482, 939
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	623, 681, 733, 1134
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	4 cut(s)	121, 265, 865, 1017
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	263, 880
RsaI	GTAC	4 cut(s)	345, 641, 716, 865
RsaNI	GTAC	4 cut(s)	344, 640, 715, 864
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	5 cut(s)	276, 596, 758, 999, 1173
SatI	GCNGC	4 cut(s)	622, 680, 732, 1133
Sau3AI	GATC	2 cut(s)	263, 880
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	298
SfaNI	GCATC	5 cut(s)	228, 344, 547, 1097, 1170
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	8 cut(s)	67, 385, 396, 684, 847, 1095, 1118, 1223
SsiI	CCGC	3 cut(s)	91, 152, 1132
SspMI	CTAG	2 cut(s)	551, 1052
StyD4I	CCNGG	1 cut(s)	296
StyI	CCWWGG	2 cut(s)	111, 259
TaaI	ACNGT	4 cut(s)	572, 644, 819, 932
TaqI	TCGA	2 cut(s)	222, 544
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	8 cut(s)	67, 385, 396, 684, 847, 1095, 1118, 1223
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	1 cut(s)	1135
TfiI	GAWTC	2 cut(s)	482, 939
Tru1I	TTAA	5 cut(s)	276, 596, 758, 999, 1173
Tru9I	TTAA	5 cut(s)	276, 596, 758, 999, 1173
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	3 cut(s)	621, 679, 731
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	5 cut(s)	598, 687, 710, 738, 929
TspRI	CASTG	1 cut(s)	649
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	3 cut(s)	385, 847, 1223
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	2 cut(s)	551, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.