Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Reverse (-)

8608976 .. 8611417

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGTTAATAGAGGTGATCTGGTTATCATTGGTATCTCTGCTGGTGTAGCCCTTGGAATTTTGATAGCTGCACTCATATTTTTCGGAATAAGGTGGTACCAAAAGCATGCCAATCTTCAACGATGTGCTAATGAGCGTAGTTTAACAACTCTTCCTATCCGCACAAATGGCTTAGGCACAAGCATCGACCTTAGTGTATCTCTTTCAACTAACATACCTATTCAAGGATCCGAGAAGGTTAAAAAAGTTCTCCACTCTCCTGGTGGAATAATCACAACAAAGACCGATTTCCTTCTGCATCAGGCGGATGTGCAGAAAGCTACACAGAATTTCACAACAATTTTAGGACAAGGGGCTTTTGGTCCAGTATATAAAGCAACAATGCCTGCTGGAGAGGTAGTAGCTGTGAAGGTGCTTGCTTCAGATTCCAAGCAGGGAGAGAAAGAGTTCCAAACAGAGGTATCTCTGTTAGGAAGACTGCATCATCGAAATCTAGTGAACCTCGTAGGTTACTGTGTAGATAAAGGACAGTGTATGTTAATCTATGAGTTCATGAGTAATGGCAGCTTATCAAACCTTCTGTACAGTGAAGAACAACAGGTTTTGAGCTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCGCATGGAATAGAGTACCTTCATGAAGGAGCAGTCCCACCAGTCATACATCGTGATTTAAAGTCTGCTAATATATTGTTAGACCAATCAATGAGAGCTAAGGTTGCTGATTTTGGACTGTCTAAGGAAGCGGTGTTTGATGGTCGGAATTCTGGCCTCAAAGGTACCTATGGCTACATAGATCCGGAATACATGTCTACAAACAAGTTCACAATGAAGAGTGACATTTACAGTTTTGGGATCATCATCTTTGAACTCATAACAGCCATCCACCCTCACCAAAACCTAATGGAATATGTTAATCTCGCTTCTATGGCTCCAGATGGTGTTGATGAAATACTTGATAACAAGCTAGTTGGGGAATGCAACCTTGAAGAAGTGAGGAGGCTGGCTAAAATTGCTCACAGATGCTTACTGAAATTACCGAGAAAGCGGCCTTCCATCGGAGAGATTTCACAGGCCATATTGAAGATTAAACAGATGCGTCTTGATAAAAGGGATACCATGTCTTTTGCAGGTGAAGAATTTTCACGGGCAGTAAGCAGAATAGAGGTTCAGCAGGTGGAGCTGGTTAGGCTGGCCAGCACAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

412

Amino Acids

45.7

Weight (kDa)

7.68

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	111 - 368	3e-51	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	113 - 367	1.2e-48	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1148, 1192
Acc36I	ACCTGC	2 cut(s)	1148, 1192
Acc65I	GGTACC	2 cut(s)	96, 806
AccB1I	GGYRCC	2 cut(s)	96, 806
AccI	GTMKAC	1 cut(s)	839
AccIII	TCCGGA	1 cut(s)	826
AciI	CCGC	4 cut(s)	160, 305, 773, 1075
AclWI	GGATC	4 cut(s)	222, 235, 818, 890
AcoI	YGGCCR	1 cut(s)	1221
AcsI	RAATTY	4 cut(s)	57, 328, 790, 1166
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	4 cut(s)	98, 584, 659, 808
AfiI	CCNNNNNNNGG	3 cut(s)	224, 457, 1085
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	6 cut(s)	119, 207, 224, 896, 1016, 1111
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	8 cut(s)	68, 320, 404, 567, 609, 740, 994, 1210
AluI	AGCT	8 cut(s)	68, 320, 404, 567, 609, 740, 994, 1210
AlwI	GGATC	4 cut(s)	222, 235, 818, 890
Aor13HI	TCCGGA	1 cut(s)	826
AoxI	GGCC	4 cut(s)	796, 1076, 1101, 1221
ApeKI	GCWGC	3 cut(s)	68, 564, 622
ApoI	RAATTY	4 cut(s)	57, 328, 790, 1166
Asp700I	GAANNNNTTC	1 cut(s)	446
Asp718I	GGTACC	2 cut(s)	96, 806
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	26, 911, 1172
AvaII	GGWCC	1 cut(s)	362
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BalI	TGGCCA	1 cut(s)	1223
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	2 cut(s)	96, 806
BbsI	GAAGAC	1 cut(s)	481
BbvI	GCAGC	3 cut(s)	55, 576, 609
BccI	CCATC	4 cut(s)	776, 917, 959, 1091
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	1135
BfaI	CTAG	2 cut(s)	494, 995
BfuAI	ACCTGC	2 cut(s)	1148, 1192
BfuI	GTATCC	1 cut(s)	1135
BisI	GCNGC	4 cut(s)	69, 565, 623, 1076
BlsI	GCNGC	4 cut(s)	70, 566, 624, 1077
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	4 cut(s)	98, 229, 808, 960
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	5 cut(s)	192, 307, 490, 1040, 1113
BpiI	GAAGAC	1 cut(s)	481
BpmI	CTGGAG	2 cut(s)	411, 945
Bpu10I	CCTNAGC	2 cut(s)	172, 741
BsaBI	GATNNNNATC	1 cut(s)	887
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 457, 1085
Bse1I	ACTGG	2 cut(s)	365, 683
Bse8I	GATNNNNATC	1 cut(s)	887
BseAI	TCCGGA	1 cut(s)	826
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	3 cut(s)	313, 619, 909
BseJI	GATNNNNATC	1 cut(s)	887
BseLI	CCNNNNNNNGG	3 cut(s)	224, 457, 1085
BseNI	ACTGG	2 cut(s)	365, 683
BseRI	GAGGAG	1 cut(s)	1039
BseXI	GCAGC	3 cut(s)	55, 576, 609
BseYI	CCCAGC	1 cut(s)	609
BsgI	GTGCAG	2 cut(s)	54, 332
BshFI	GGCC	4 cut(s)	798, 1078, 1103, 1223
BshNI	GGYRCC	2 cut(s)	96, 806
BsiSI	CCGG	1 cut(s)	827
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	3 cut(s)	224, 457, 1085
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	1010
BsnI	GGCC	4 cut(s)	798, 1078, 1103, 1223
Bsp13I	TCCGGA	1 cut(s)	826
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	16, 227, 823, 882
BspACI	CCGC	4 cut(s)	160, 305, 773, 1075
BspANI	GGCC	4 cut(s)	798, 1078, 1103, 1223
BspEI	TCCGGA	1 cut(s)	826
BspHI	TCATGA	2 cut(s)	552, 664
BspLI	GGNNCC	4 cut(s)	98, 229, 808, 960
BspMI	ACCTGC	2 cut(s)	1148, 1192
BspPI	GGATC	4 cut(s)	222, 235, 818, 890
BspT107I	GGYRCC	2 cut(s)	96, 806
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	365, 683
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	16, 227, 823, 882
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	5 cut(s)	515, 531, 587, 762, 875
Bst6I	CTCTTC	2 cut(s)	156, 854
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	6 cut(s)	108, 387, 417, 1032, 1221, 1225
BstDEI	CTNAG	4 cut(s)	172, 191, 741, 765
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	313, 619, 909
BstKTI	GATC	4 cut(s)	19, 230, 826, 885
BstMBI	GATC	4 cut(s)	16, 227, 823, 882
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 168, 746, 956, 1040, 1207, 1216
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	2 cut(s)	110, 838
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	3 cut(s)	55, 576, 609
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	2 cut(s)	227, 823
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	2 cut(s)	227, 823
BsuI	GTATCC	1 cut(s)	1135
BsuRI	GGCC	4 cut(s)	798, 1078, 1103, 1223
BtsCI	GGATG	3 cut(s)	313, 619, 909
BtsIMutI	CAGTG	2 cut(s)	536, 592
BveI	ACCTGC	2 cut(s)	1148, 1192
Cac8I	GCNNGC	6 cut(s)	108, 387, 417, 1032, 1221, 1225
CciI	TCATGA	2 cut(s)	552, 664
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	1115
Csp6I	GTAC	4 cut(s)	97, 583, 658, 807
CviAII	CATG	6 cut(s)	107, 553, 647, 665, 835, 1147
CviQI	GTAC	4 cut(s)	97, 583, 658, 807
DdeI	CTNAG	4 cut(s)	172, 191, 741, 765
DpnI	GATC	4 cut(s)	18, 229, 825, 884
DpnII	GATC	4 cut(s)	16, 227, 823, 882
DraI	TTTAAA	1 cut(s)	702
EaeI	YGGCCR	1 cut(s)	1221
Eam1104I	CTCTTC	2 cut(s)	156, 854
EarI	CTCTTC	2 cut(s)	156, 854
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	6 cut(s)	110, 556, 650, 668, 838, 1150
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	6 cut(s)	106, 552, 646, 664, 834, 1146
FblI	GTMKAC	1 cut(s)	839
Fnu4HI	GCNGC	4 cut(s)	69, 565, 623, 1076
FokI	GGATG	3 cut(s)	320, 626, 896
Fsp4HI	GCNGC	4 cut(s)	69, 565, 623, 1076
FspBI	CTAG	2 cut(s)	494, 995
GluI	GCNGC	4 cut(s)	69, 565, 623, 1076
GsaI	CCCAGC	1 cut(s)	613
GsuI	CTGGAG	2 cut(s)	411, 945
HaeIII	GGCC	4 cut(s)	798, 1078, 1103, 1223
HapII	CCGG	1 cut(s)	827
HgaI	GACGC	1 cut(s)	1115
Hin1II	CATG	6 cut(s)	110, 556, 650, 668, 838, 1150
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	1 cut(s)	827
HphI	GGTGA	3 cut(s)	26, 911, 1172
Hpy166II	GTNNAC	3 cut(s)	499, 840, 852
Hpy188I	TCNGA	5 cut(s)	86, 232, 424, 789, 1088
Hpy188III	TCNNGA	7 cut(s)	553, 635, 665, 695, 827, 962, 1130
Hpy8I	GTNNAC	3 cut(s)	499, 840, 852
HpyAV	CCTTC	7 cut(s)	229, 302, 403, 587, 662, 671, 1089
HpyCH4III	ACNGT	5 cut(s)	515, 531, 587, 762, 875
HpyCH4V	TGCA	7 cut(s)	71, 298, 313, 481, 625, 1008, 1157
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 168, 746, 956, 1040, 1207, 1216
HpyF3I	CTNAG	4 cut(s)	172, 191, 741, 765
Hsp92II	CATG	6 cut(s)	110, 556, 650, 668, 838, 1150
Kpn2I	TCCGGA	1 cut(s)	826
KpnI	GGTACC	2 cut(s)	100, 810
Kzo9I	GATC	4 cut(s)	16, 227, 823, 882
LmnI	GCTCC	3 cut(s)	671, 964, 1207
Lsp1109I	GCAGC	3 cut(s)	55, 576, 609
LweI	GCATC	5 cut(s)	192, 307, 490, 1040, 1113
MaeI	CTAG	2 cut(s)	494, 995
MaeIII	GTNAC	2 cut(s)	509, 863
MalI	GATC	4 cut(s)	18, 229, 825, 884
MboI	GATC	4 cut(s)	16, 227, 823, 882
MboII	GAAGA	8 cut(s)	107, 143, 486, 602, 871, 1028, 1123, 1175
MflI	RGATCY	2 cut(s)	227, 823
MlsI	TGGCCA	1 cut(s)	1223
MluCI	AATT	8 cut(s)	57, 328, 339, 627, 790, 1038, 1061, 1166
MluNI	TGGCCA	1 cut(s)	1223
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	9 cut(s)	5, 388, 451, 512, 809, 927, 1017, 1020, 1186
Mox20I	TGGCCA	1 cut(s)	1223
MroI	TCCGGA	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	1223
MseI	TTAA	7 cut(s)	6, 143, 240, 539, 701, 942, 1116
Msp20I	TGGCCA	1 cut(s)	1223
MspI	CCGG	1 cut(s)	827
MspR9I	CCNGG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	1010
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	7 cut(s)	47, 168, 746, 956, 1040, 1207, 1216
NdeII	GATC	4 cut(s)	16, 227, 823, 882
NlaIII	CATG	6 cut(s)	110, 556, 650, 668, 838, 1150
NlaIV	GGNNCC	4 cut(s)	98, 229, 808, 960
NmuCI	GTSAC	1 cut(s)	863
NspI	RCATGY	2 cut(s)	110, 838
PaeI	GCATGC	1 cut(s)	110
PagI	TCATGA	2 cut(s)	552, 664
PaqCI	CACCTGC	2 cut(s)	1148, 1192
PciI	ACATGT	1 cut(s)	834
PctI	GAATGC	1 cut(s)	1010
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	4 cut(s)	70, 566, 624, 1077
PscI	ACATGT	1 cut(s)	834
Psp6I	CCWGG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	4 cut(s)	98, 229, 808, 960
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	227, 823
RsaI	GTAC	4 cut(s)	98, 584, 659, 808
RsaNI	GTAC	4 cut(s)	97, 583, 658, 807
SaqAI	TTAA	7 cut(s)	6, 143, 240, 539, 701, 942, 1116
SatI	GCNGC	4 cut(s)	69, 565, 623, 1076
Sau3AI	GATC	4 cut(s)	16, 227, 823, 882
Sau96I	GGNCC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	261
SfaNI	GCATC	5 cut(s)	192, 307, 490, 1040, 1113
SinI	GGWCC	1 cut(s)	362
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	8 cut(s)	57, 328, 339, 627, 790, 1038, 1061, 1166
SsiI	CCGC	4 cut(s)	160, 305, 773, 1075
SspMI	CTAG	2 cut(s)	494, 995
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	5 cut(s)	515, 531, 587, 762, 875
TaqI	TCGA	2 cut(s)	186, 487
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	8 cut(s)	57, 328, 339, 627, 790, 1038, 1061, 1166
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	1078
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	7 cut(s)	6, 143, 240, 539, 701, 942, 1116
Tru9I	TTAA	7 cut(s)	6, 143, 240, 539, 701, 942, 1116
TscAI	CASTG	2 cut(s)	536, 592
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	3 cut(s)	68, 564, 622
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	6 cut(s)	541, 630, 653, 681, 872, 990
TspRI	CASTG	2 cut(s)	536, 592
VpaK11BI	GGWCC	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	222
XapI	RAATTY	4 cut(s)	57, 328, 790, 1166
XceI	RCATGY	2 cut(s)	110, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	839
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	2 cut(s)	494, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.