Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438103.1

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1426

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438103.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

gtatctctgttaggaagactgcatcatcgaaatctagtgaacctcgtaggttactgtgtagataaaggacagcgtatgttaatctatgagttcatgagtaatggcagcttatcaaaccttctgtacagtgaagaacaacaggttttgagctgggatgaaaggctgcaaattgctcttgatatttcgcatggaatagagtaccttcacgaaggggcagccccaccagtcatacatcgtgatttaaagtccgctaatatattgttagaccaatcaatgagagctaaggttgctgattttggactgtctaaggaagaggtgtttgatggtcggaattcaggcctcaagggtacctatggctacatagatccggaatacatgtctacaaacaagttcacaatgaagagtgacatttacagttttggggtcatcatctttgaactcataacagccatccaccctcaccaaaacctaatggaatatgttaatcttgcttctatggctccagatggtgttgacgaaatacttgataacaagctagttggggaatgcaaccttgaagaagtgaggaggctggctaaaattgctcacagatgcttactgaaattaccgagaaagcggccttccatcggagagatttcacaggccatattgaagattaaacagatgcgtcttgataaaagggataccatgtcttttgcaggtgaagaattttcacgggcagtaagcagaatagaggttcagcaggtggagctggttaggctggccagcacaaaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

29.42

Weight (kDa)

6.28

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	689, 733
Acc36I	ACCTGC	2 cut(s)	689, 733
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	2 cut(s)	249, 616
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	2 cut(s)	331, 707
AfaI	GTAC	3 cut(s)	125, 200, 349
AfiI	CCNNNNNNNGG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	437, 557, 652
AluBI	AGCT	5 cut(s)	108, 150, 281, 535, 751
AluI	AGCT	5 cut(s)	108, 150, 281, 535, 751
AlwI	GGATC	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	4 cut(s)	337, 617, 642, 762
ApeKI	GCWGC	3 cut(s)	105, 163, 215
ApoI	RAATTY	2 cut(s)	331, 707
Asp718I	GGTACC	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	452, 713
BalI	TGGCCA	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	22
BbvI	GCAGC	3 cut(s)	117, 150, 227
BccI	CCATC	4 cut(s)	317, 458, 500, 632
BciVI	GTATCC	1 cut(s)	676
BfaI	CTAG	2 cut(s)	35, 536
BfuAI	ACCTGC	2 cut(s)	689, 733
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	4 cut(s)	106, 164, 216, 617
BlsI	GCNGC	4 cut(s)	107, 165, 217, 618
BmiI	GGNNCC	2 cut(s)	349, 501
BmsI	GCATC	3 cut(s)	31, 581, 654
BpiI	GAAGAC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	326
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	1 cut(s)	224
BseAI	TCCGGA	1 cut(s)	367
BseGI	GGATG	2 cut(s)	160, 450
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	580
BseXI	GCAGC	3 cut(s)	117, 150, 227
BseYI	CCCAGC	1 cut(s)	150
BshFI	GGCC	4 cut(s)	339, 619, 644, 764
BshNI	GGYRCC	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	4 cut(s)	339, 619, 644, 764
Bsp13I	TCCGGA	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	2 cut(s)	249, 616
BspANI	GGCC	4 cut(s)	339, 619, 644, 764
BspEI	TCCGGA	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	349, 501
BspMI	ACCTGC	2 cut(s)	689, 733
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	364
Bst4CI	ACNGT	4 cut(s)	56, 128, 303, 416
Bst6I	CTCTTC	2 cut(s)	306, 395
BstAUI	TGTACA	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	573, 762, 766
BstDEI	CTNAG	2 cut(s)	282, 306
BstF5I	GGATG	2 cut(s)	160, 450
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 497, 581, 748, 757
BstNSI	RCATGY	1 cut(s)	379
BstV1I	GCAGC	3 cut(s)	117, 150, 227
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	339, 619, 644, 764
BtsCI	GGATG	2 cut(s)	160, 450
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	2 cut(s)	689, 733
Cac8I	GCNNGC	3 cut(s)	573, 762, 766
CciI	TCATGA	1 cut(s)	93
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	3 cut(s)	124, 199, 348
CviAII	CATG	4 cut(s)	94, 188, 376, 688
CviQI	GTAC	3 cut(s)	124, 199, 348
DdeI	CTNAG	2 cut(s)	282, 306
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	306, 395
EarI	CTCTTC	2 cut(s)	306, 395
Eco147I	AGGCCT	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	331
FaeI	CATG	4 cut(s)	97, 191, 379, 691
FatI	CATG	4 cut(s)	93, 187, 375, 687
FblI	GTMKAC	1 cut(s)	380
Fnu4HI	GCNGC	4 cut(s)	106, 164, 216, 617
FokI	GGATG	2 cut(s)	167, 437
Fsp4HI	GCNGC	4 cut(s)	106, 164, 216, 617
FspBI	CTAG	2 cut(s)	35, 536
GluI	GCNGC	4 cut(s)	106, 164, 216, 617
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	339, 619, 644, 764
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	656
Hin1II	CATG	4 cut(s)	97, 191, 379, 691
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	452, 713
Hpy166II	GTNNAC	4 cut(s)	40, 381, 393, 514
Hpy188I	TCNGA	2 cut(s)	330, 629
Hpy188III	TCNNGA	7 cut(s)	94, 176, 206, 236, 368, 503, 671
Hpy8I	GTNNAC	4 cut(s)	40, 381, 393, 514
HpyAV	CCTTC	4 cut(s)	128, 203, 212, 630
HpyCH4III	ACNGT	4 cut(s)	56, 128, 303, 416
HpyCH4V	TGCA	4 cut(s)	22, 166, 549, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 497, 581, 748, 757
HpyF3I	CTNAG	2 cut(s)	282, 306
Hsp92II	CATG	4 cut(s)	97, 191, 379, 691
Kpn2I	TCCGGA	1 cut(s)	367
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	505, 748
Lsp1109I	GCAGC	3 cut(s)	117, 150, 227
LweI	GCATC	3 cut(s)	31, 581, 654
MaeI	CTAG	2 cut(s)	35, 536
MaeIII	GTNAC	2 cut(s)	50, 404
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	7 cut(s)	27, 143, 323, 412, 569, 664, 716
MflI	RGATCY	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	5 cut(s)	168, 331, 579, 602, 707
MluNI	TGGCCA	1 cut(s)	764
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	7 cut(s)	53, 307, 350, 468, 558, 561, 727
Mox20I	TGGCCA	1 cut(s)	764
MroI	TCCGGA	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	4 cut(s)	80, 242, 483, 657
Msp20I	TGGCCA	1 cut(s)	764
MspI	CCGG	1 cut(s)	368
Mva1269I	GAATGC	1 cut(s)	551
MwoI	GCNNNNNNNGC	5 cut(s)	287, 497, 581, 748, 757
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	4 cut(s)	97, 191, 379, 691
NlaIV	GGNNCC	2 cut(s)	349, 501
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	379
PagI	TCATGA	1 cut(s)	93
PaqCI	CACCTGC	2 cut(s)	689, 733
PceI	AGGCCT	1 cut(s)	339
PciI	ACATGT	1 cut(s)	375
PctI	GAATGC	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	107, 165, 217, 618
PscI	ACATGT	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	349, 501
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	125, 200, 349
RsaNI	GTAC	3 cut(s)	124, 199, 348
SaqAI	TTAA	4 cut(s)	80, 242, 483, 657
SatI	GCNGC	4 cut(s)	106, 164, 216, 617
Sau3AI	GATC	1 cut(s)	364
SfaNI	GCATC	3 cut(s)	31, 581, 654
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	5 cut(s)	168, 331, 579, 602, 707
SseBI	AGGCCT	1 cut(s)	339
SsiI	CCGC	2 cut(s)	249, 616
SspMI	CTAG	2 cut(s)	35, 536
StuI	AGGCCT	1 cut(s)	339
TaaI	ACNGT	4 cut(s)	56, 128, 303, 416
TaqI	TCGA	1 cut(s)	28
TasI	AATT	5 cut(s)	168, 331, 579, 602, 707
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	619
Tru1I	TTAA	4 cut(s)	80, 242, 483, 657
Tru9I	TTAA	4 cut(s)	80, 242, 483, 657
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	3 cut(s)	105, 163, 215
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	82, 171, 413
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	2 cut(s)	331, 707
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	380
XspI	CTAG	2 cut(s)	35, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.