Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Reverse (-)

298339 .. 301351

Gene Structure 3013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00350.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGATCAGAATTCGTTACTGGGTTTTCAGCTGGTGAGGGCAGATAACCTGTGGCATTTATGCCCTGCAAGATGTTCTCATTGCCTGAATTTCAGAAGAGACCAAAGAATGGTTCATCAAACTGATCTTGTTATCATTGGCGTCTCTGTTGGTCTAGCCCTCGGCATTTTGATTGCTGTACTCATATTTTTTGGCATAAGGTGGTATAAAAAGCGTGCTAATCTACAACAATGTGCTAATGAGCGTAGTCTTACCACTCTACCTATACGCACAAATGGCTTAAGTACAACCACTGACTATAGTGCGTCTCTTTCAACTTCCAAAGCTATTCAAGGACCCGAGAACCATCAAAAAAGTTCTCCGCTCTCTTGGTGGAGTCATCACAGCAAAGATCGATTTGCTTCTGCATCAGGCGTACATAGATACTCTTACAAAGATGTACAGAAAGCTACTCAGAATTTCACAACACTTTTGGGACAAGGTTCATTTGGTCCGGTCTATAAAGCAAAAATGCCTGCTGGAGAGGTAGTAGCTGTTAAGGTCCTTGCTTCGAATTCTAAGCAGGGAGAGAAAGAGTTCCAAACAGAGGTATCTCTGCTAGGAAGACTGCATCATCGGAATCTAGTGAATCTAGTAGGATATTGTGTAGATAAAGGGCAGCGTATGCTAATCTACGAGTTCATGAGTAACGGAAGCTTATCAAACCTTCTGTACAGTGAAGAACAACAGGTTTTGAGCTGGGATGAAAGGCTACAAATTGCTCTTGACATTTCACATGGAATTGATTACCTTCATGAAGGGGCGGTCCCACCAGTTATACATCGTGACTTAAAATCTGCAAATATACTGTTAGACGAGTCGTTGAGAGCTAAGGTTGCTGATTTCGGATTGTCCAAGGAAGAGGTCTATGATGGCCGGAATTCTGGTCTGAAAGGTACCTACGGCTACATAGATCCAGTATACATATCTACAAACCAGTTTACAATGAAGAGCGACATCTACAGTTTCGGAATTATTATATTTGAGCTAATTACAGCCATCCACCCTCACCAGAACTTGATGGAATACATTAATCTCGCTGCTATGGCTCCAGATGGCGTTGATGAAATACTTGATAAGCAACTGGTTGGAGAATGCAACATCGAAGAAGTGAGGATGCTAGCTAGAGTTGCTCACAAATGCTTACATCAATTACCGAGAAAGCGGCCTTCCATAGCAGAAGTGTCACAGGCTATATTGAAGATAAAACAGCGGCGTCTCGCTAAAAAAGATACCATGTCTTTTGCAGGTGAAGAGTTTTCAAGGGCTGTAAGTCGAATAGAAGTTCAGCAGGTGGAGCTGAGTAGAATAGCGAGCGTGAACGAAAGAGTAACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

460

Amino Acids

51.65

Weight (kDa)

8.67

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1277, 1321
Acc36I	ACCTGC	2 cut(s)	1277, 1321
Acc65I	GGTACC	1 cut(s)	935
AccB1I	GGYRCC	1 cut(s)	935
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccBSI	CCGCTC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	960
AciI	CCGC	4 cut(s)	362, 803, 1204, 1252
AclWI	GGATC	2 cut(s)	12, 947
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	5 cut(s)	10, 88, 457, 553, 919
AcyI	GRCGYC	2 cut(s)	141, 1255
AfaI	GTAC	6 cut(s)	180, 286, 417, 441, 713, 937
AfiI	CCNNNNNNNGG	2 cut(s)	109, 586
AflII	CTTAAG	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	315, 332, 1240, 1302
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
Alw26I	GTCTC	4 cut(s)	93, 148, 312, 1262
AlwI	GGATC	2 cut(s)	12, 947
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	913, 1205
ApeKI	GCWGC	2 cut(s)	658, 1079
ApoI	RAATTY	5 cut(s)	10, 88, 457, 553, 919
AseI	ATTAAT	1 cut(s)	1071
Asp700I	GAANNNNTTC	1 cut(s)	575
Asp718I	GGTACC	1 cut(s)	935
AspS9I	GGNCC	4 cut(s)	335, 491, 541, 805
AsuHPI	GGTGA	3 cut(s)	46, 1040, 1301
AsuII	TTCGAA	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	1159
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	4 cut(s)	335, 491, 541, 805
BaeI	ACNNNNGTAYC	2 cut(s)	573, 606
BanI	GGYRCC	1 cut(s)	935
BbsI	GAAGAC	1 cut(s)	610
BbvI	GCAGC	2 cut(s)	670, 1066
BccI	CCATC	5 cut(s)	354, 905, 1046, 1054, 1088
BceAI	ACGGC	1 cut(s)	958
BcoDI	GTCTC	4 cut(s)	93, 148, 312, 1262
BfaI	CTAG	6 cut(s)	155, 599, 623, 632, 1160, 1164
BfmI	CTRYAG	2 cut(s)	298, 1000
BfrI	CTTAAG	1 cut(s)	280
BfuAI	ACCTGC	2 cut(s)	1277, 1321
BisI	GCNGC	4 cut(s)	659, 1080, 1205, 1253
BlsI	GCNGC	4 cut(s)	660, 1081, 1206, 1254
Bme18I	GGWCC	4 cut(s)	335, 491, 541, 805
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	335, 491, 541, 805
BmiI	GGNNCC	4 cut(s)	337, 807, 937, 1089
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	3 cut(s)	416, 619, 1146
BmtI	GCTAGC	1 cut(s)	1163
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	610
BpmI	CTGGAG	2 cut(s)	540, 1074
Bpu10I	CCTNAGC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	551
Bsa29I	ATCGAT	1 cut(s)	394
BsaHI	GRCGYC	2 cut(s)	141, 1255
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	160, 894
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 586
Bse1I	ACTGG	5 cut(s)	24, 812, 956, 976, 1128
Bse3DI	GCAATG	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	160, 894
BseGI	GGATG	3 cut(s)	748, 1038, 1161
BseLI	CCNNNNNNNGG	2 cut(s)	109, 586
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	467, 1331
BseNI	ACTGG	5 cut(s)	24, 812, 956, 976, 1128
BseXI	GCAGC	2 cut(s)	670, 1066
BseYI	CCCAGC	1 cut(s)	738
BshFI	GGCC	2 cut(s)	915, 1207
BshNI	GGYRCC	1 cut(s)	935
BshVI	ATCGAT	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	494, 916
BslFI	GGGAC	2 cut(s)	489, 791
BslI	CCNNNNNNNGG	2 cut(s)	109, 586
BsmAI	GTCTC	4 cut(s)	93, 148, 312, 1262
BsmBI	CGTCTC	3 cut(s)	148, 312, 1262
BsmFI	GGGAC	2 cut(s)	489, 791
BsmI	GAATGC	1 cut(s)	1139
BsnI	GGCC	2 cut(s)	915, 1207
Bso31I	GGTCTC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1407I	TGTACA	2 cut(s)	439, 711
Bsp143I	GATC	4 cut(s)	4, 124, 391, 952
BspACI	CCGC	4 cut(s)	362, 803, 1204, 1252
BspANI	GGCC	2 cut(s)	915, 1207
BspCNI	CTCAG	2 cut(s)	466, 1332
BspDI	ATCGAT	1 cut(s)	394
BspHI	TCATGA	2 cut(s)	681, 793
BspLI	GGNNCC	4 cut(s)	337, 807, 937, 1089
BspMI	ACCTGC	2 cut(s)	1277, 1321
BspOI	GCTAGC	1 cut(s)	1163
BspPI	GGATC	2 cut(s)	12, 947
BspQI	GCTCTTC	1 cut(s)	983
BspT104I	TTCGAA	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	935
BspTI	CTTAAG	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	79
BsrGI	TGTACA	2 cut(s)	439, 711
BsrI	ACTGG	5 cut(s)	24, 812, 956, 976, 1128
BssECI	CCNNGG	2 cut(s)	160, 894
BssMI	GATC	4 cut(s)	4, 124, 391, 952
BssNAI	GTATAC	1 cut(s)	961
BssNI	GRCGYC	2 cut(s)	141, 1255
BssT1I	CCWWGG	1 cut(s)	894
Bst1107I	GTATAC	1 cut(s)	961
Bst4CI	ACNGT	3 cut(s)	716, 849, 1004
Bst6I	CTCTTC	4 cut(s)	91, 894, 983, 1287
BstACI	GRCGYC	2 cut(s)	141, 1255
BstAFI	CTTAAG	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	664
BstAUI	TGTACA	2 cut(s)	439, 711
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	4 cut(s)	216, 516, 1161, 1354
BstDEI	CTNAG	4 cut(s)	453, 558, 870, 1340
BstF5I	GGATG	3 cut(s)	748, 1038, 1161
BstKTI	GATC	4 cut(s)	7, 127, 394, 955
BstMAI	GTCTC	4 cut(s)	93, 148, 312, 1262
BstMBI	GATC	4 cut(s)	4, 124, 391, 952
BstMWI	GCNNNNNNNGC	6 cut(s)	276, 664, 875, 1085, 1169, 1336
BstSFI	CTRYAG	2 cut(s)	298, 1000
BstV1I	GCAGC	2 cut(s)	670, 1066
BstV2I	GAAGAC	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	952
BstZ17I	GTATAC	1 cut(s)	961
Bsu15I	ATCGAT	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	915, 1207
BsuTUI	ATCGAT	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	748, 1038, 1161
BtsIMutI	CAGTG	2 cut(s)	291, 721
BveI	ACCTGC	2 cut(s)	1277, 1321
Cac8I	GCNNGC	4 cut(s)	216, 516, 1161, 1354
CciI	TCATGA	2 cut(s)	681, 793
Cfr13I	GGNCC	4 cut(s)	335, 491, 541, 805
ClaI	ATCGAT	1 cut(s)	394
CseI	GACGC	3 cut(s)	130, 294, 1244
Csp6I	GTAC	6 cut(s)	179, 285, 416, 440, 712, 936
CviAII	CATG	4 cut(s)	682, 776, 794, 1276
CviQI	GTAC	6 cut(s)	179, 285, 416, 440, 712, 936
DdeI	CTNAG	4 cut(s)	453, 558, 870, 1340
DpnI	GATC	4 cut(s)	6, 126, 393, 954
DpnII	GATC	4 cut(s)	4, 124, 391, 952
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	4 cut(s)	91, 894, 983, 1287
EarI	CTCTTC	4 cut(s)	91, 894, 983, 1287
Eco130I	CCWWGG	1 cut(s)	894
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	4 cut(s)	335, 491, 541, 805
Eco88I	CYCGRG	1 cut(s)	338
EcoO109I	RGGNCCY	2 cut(s)	335, 541
EcoRI	GAATTC	3 cut(s)	10, 553, 919
EcoT14I	CCWWGG	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	894
Esp3I	CGTCTC	3 cut(s)	148, 312, 1262
FaeI	CATG	4 cut(s)	685, 779, 797, 1279
FaqI	GGGAC	2 cut(s)	489, 791
FatI	CATG	4 cut(s)	681, 775, 793, 1275
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	4 cut(s)	659, 1080, 1205, 1253
FokI	GGATG	3 cut(s)	755, 1025, 1168
Fsp4HI	GCNGC	4 cut(s)	659, 1080, 1205, 1253
FspBI	CTAG	6 cut(s)	155, 599, 623, 632, 1160, 1164
GluI	GCNGC	4 cut(s)	659, 1080, 1205, 1253
GsaI	CCCAGC	1 cut(s)	742
GsuI	CTGGAG	2 cut(s)	540, 1074
HaeIII	GGCC	2 cut(s)	915, 1207
HapII	CCGG	2 cut(s)	494, 916
HgaI	GACGC	3 cut(s)	130, 294, 1244
Hin1I	GRCGYC	2 cut(s)	141, 1255
Hin1II	CATG	4 cut(s)	685, 779, 797, 1279
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	4 cut(s)	376, 619, 628, 857
HpaII	CCGG	2 cut(s)	494, 916
HphI	GGTGA	3 cut(s)	46, 1040, 1301
Hpy166II	GTNNAC	3 cut(s)	961, 981, 1360
Hpy188I	TCNGA	7 cut(s)	9, 95, 456, 618, 887, 930, 1010
Hpy188III	TCNNGA	5 cut(s)	682, 764, 794, 824, 1091
Hpy8I	GTNNAC	3 cut(s)	961, 981, 1360
HpyAV	CCTTC	4 cut(s)	716, 791, 800, 1218
HpyCH4III	ACNGT	3 cut(s)	716, 849, 1004
HpyCH4V	TGCA	6 cut(s)	68, 407, 610, 839, 1137, 1286
HpyF10VI	GCNNNNNNNGC	6 cut(s)	276, 664, 875, 1085, 1169, 1336
HpyF3I	CTNAG	4 cut(s)	453, 558, 870, 1340
Hsp92I	GRCGYC	2 cut(s)	141, 1255
Hsp92II	CATG	4 cut(s)	685, 779, 797, 1279
KpnI	GGTACC	1 cut(s)	939
Kzo9I	GATC	4 cut(s)	4, 124, 391, 952
LguI	GCTCTTC	1 cut(s)	983
LmnI	GCTCC	2 cut(s)	1093, 1336
Lsp1109I	GCAGC	2 cut(s)	670, 1066
LweI	GCATC	3 cut(s)	416, 619, 1146
MaeI	CTAG	6 cut(s)	155, 599, 623, 632, 1160, 1164
MaeIII	GTNAC	5 cut(s)	15, 686, 824, 1224, 1369
MalI	GATC	4 cut(s)	6, 126, 393, 954
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	4 cut(s)	4, 124, 391, 952
MboII	GAAGA	8 cut(s)	108, 615, 731, 911, 1000, 1157, 1252, 1304
MflI	RGATCY	1 cut(s)	952
MlyI	GAGTC	2 cut(s)	385, 866
MmeI	TCCRAC	1 cut(s)	1108
MnlI	CCTC	7 cut(s)	30, 170, 517, 580, 895, 1056, 1146
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	4 cut(s)	281, 537, 830, 1071
MspA1I	CMGCKG	2 cut(s)	31, 1252
MspCI	CTTAAG	1 cut(s)	280
MspI	CCGG	2 cut(s)	494, 916
Mva1269I	GAATGC	1 cut(s)	1139
MwoI	GCNNNNNNNGC	6 cut(s)	276, 664, 875, 1085, 1169, 1336
NdeII	GATC	4 cut(s)	4, 124, 391, 952
NheI	GCTAGC	1 cut(s)	1159
NlaIII	CATG	4 cut(s)	685, 779, 797, 1279
NlaIV	GGNNCC	4 cut(s)	337, 807, 937, 1089
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	2 cut(s)	824, 1224
NspV	TTCGAA	1 cut(s)	551
PagI	TCATGA	2 cut(s)	681, 793
PaqCI	CACCTGC	2 cut(s)	1277, 1321
PciSI	GCTCTTC	1 cut(s)	983
PctI	GAATGC	1 cut(s)	1139
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	619, 628
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	660, 1081, 1206, 1254
PleI	GAGTC	2 cut(s)	384, 865
PpsI	GAGTC	2 cut(s)	384, 865
PpuMI	RGGWCCY	2 cut(s)	335, 541
PshBI	ATTAAT	1 cut(s)	1071
Psp5II	RGGWCCY	2 cut(s)	335, 541
PspFI	CCCAGC	1 cut(s)	738
PspN4I	GGNNCC	4 cut(s)	337, 807, 937, 1089
PspPI	GGNCC	4 cut(s)	335, 491, 541, 805
PspPPI	RGGWCCY	2 cut(s)	335, 541
PsuI	RGATCY	1 cut(s)	952
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	6 cut(s)	180, 286, 417, 441, 713, 937
RsaNI	GTAC	6 cut(s)	179, 285, 416, 440, 712, 936
SapI	GCTCTTC	1 cut(s)	983
SaqAI	TTAA	4 cut(s)	281, 537, 830, 1071
SatI	GCNGC	4 cut(s)	659, 1080, 1205, 1253
Sau3AI	GATC	4 cut(s)	4, 124, 391, 952
Sau96I	GGNCC	4 cut(s)	335, 491, 541, 805
SchI	GAGTC	2 cut(s)	385, 866
SfaNI	GCATC	3 cut(s)	416, 619, 1146
SfcI	CTRYAG	2 cut(s)	298, 1000
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	4 cut(s)	335, 491, 541, 805
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SsiI	CCGC	4 cut(s)	362, 803, 1204, 1252
SspMI	CTAG	6 cut(s)	155, 599, 623, 632, 1160, 1164
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	3 cut(s)	716, 849, 1004
TaqI	TCGA	4 cut(s)	394, 551, 1143, 1315
TatI	WGTACW	4 cut(s)	178, 284, 439, 711
TauI	GCSGC	2 cut(s)	1207, 1255
TfiI	GAWTC	2 cut(s)	619, 628
Tru1I	TTAA	4 cut(s)	281, 537, 830, 1071
Tru9I	TTAA	4 cut(s)	281, 537, 830, 1071
TscAI	CASTG	2 cut(s)	298, 721
TseFI	GTSAC	2 cut(s)	824, 1224
TseI	GCWGC	2 cut(s)	658, 1079
Tsp45I	GTSAC	2 cut(s)	824, 1224
TspDTI	ATGAA	8 cut(s)	104, 474, 670, 759, 782, 810, 1001, 1119
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	298, 721
Van91I	CCANNNNNTGG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	280
VpaK11BI	GGWCC	4 cut(s)	335, 491, 541, 805
VspI	ATTAAT	1 cut(s)	1071
XapI	RAATTY	5 cut(s)	10, 88, 457, 553, 919
XmiI	GTMKAC	1 cut(s)	960
XmnI	GAANNNNTTC	1 cut(s)	575
XspI	CTAG	6 cut(s)	155, 599, 623, 632, 1160, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.