Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Forward (+)

73731631 .. 73735847

Gene Structure 4217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG559300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTCTTGCTGCAGGTATCTCTGTTAGGAAGACTGCATCATCGAAATCTAGTGAACCTCGTAGGTTACTGTGTAGATAAAGGACAGCGTATGTTAATCTATGAGTTCATGAGTAATGGCAGCTTATCAAACCTTCTGTACAGTGAAGAACAACAGGTTTTGAGCTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCGCATGGAATAGAGTACCTTCACGAAGGGGCAGCCCCACCAGTCATACATCGTGATTTAAAGTCCGCTAATATATTGTTAGACCAATCAATGAGAGCTAAGGTTGCTGATTTTGGACTGTCTAAGGAAGAGGTGTTTGATGGTCGGAATTCAGGCCTCAAGGGTACCTATGGCTACATAGATCCGGAATACATGTCTACAAACAAGTTCACAATGAAGAGTGACATTTACAGTTTTGGGGTCATCATCTTTGAACTCATAACAGCCATCCACCCTCACCAAAACCTAATGGAATATGTTAATCTTGCTTCTATGGCTCCAGATGGTGTTGACGAAATACTTGATAACAAGCTAGTTGGGGAATGCAACCTTGAAGAAGTGAGGAGGCTGGCTAAAATTGCTCACAGATGCTTACTGAAATTACCGAGAAAGCGGCCTTCCATCGGAGAAATTTCACAGGCCATATTGAAGATTAAACAGATGCGTCTTGATAAAAGGGATACCATGTCTTTTGCAGGTGAAGAATTTTCACGGGCAGTAAGCAGAATAGAGGTTCAGCAGGTGGAGCTGGTTAGGCTGGCCAGCACAAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

30.01

Weight (kDa)

6.26

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 220	9.9e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	6 - 219	1.1e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	704, 748
Acc36I	ACCTGC	3 cut(s)	4, 704, 748
Acc65I	GGTACC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	2 cut(s)	264, 631
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	3 cut(s)	346, 648, 722
AfaI	GTAC	3 cut(s)	140, 215, 364
AfiI	CCNNNNNNNGG	1 cut(s)	641
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	452, 572, 667
AluBI	AGCT	5 cut(s)	123, 165, 296, 550, 766
AluI	AGCT	5 cut(s)	123, 165, 296, 550, 766
AlwI	GGATC	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	4 cut(s)	352, 632, 657, 777
ApeKI	GCWGC	4 cut(s)	10, 120, 178, 230
ApoI	RAATTY	3 cut(s)	346, 648, 722
Asp718I	GGTACC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	467, 728
BalI	TGGCCA	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	132, 165, 242
BccI	CCATC	4 cut(s)	332, 473, 515, 647
BciVI	GTATCC	1 cut(s)	691
BfaI	CTAG	2 cut(s)	50, 551
BfmI	CTRYAG	1 cut(s)	11
BfuAI	ACCTGC	3 cut(s)	4, 704, 748
BfuI	GTATCC	1 cut(s)	691
BisI	GCNGC	5 cut(s)	11, 121, 179, 231, 632
BlsI	GCNGC	5 cut(s)	12, 122, 180, 232, 633
BmiI	GGNNCC	2 cut(s)	364, 516
BmsI	GCATC	3 cut(s)	46, 596, 669
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse1I	ACTGG	1 cut(s)	239
BseAI	TCCGGA	1 cut(s)	382
BseGI	GGATG	2 cut(s)	175, 465
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	595
BseXI	GCAGC	3 cut(s)	132, 165, 242
BseYI	CCCAGC	1 cut(s)	165
BshFI	GGCC	4 cut(s)	354, 634, 659, 779
BshNI	GGYRCC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	4 cut(s)	354, 634, 659, 779
Bsp13I	TCCGGA	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	2 cut(s)	264, 631
BspANI	GGCC	4 cut(s)	354, 634, 659, 779
BspEI	TCCGGA	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	364, 516
BspMAI	CTGCAG	1 cut(s)	15
BspMI	ACCTGC	3 cut(s)	4, 704, 748
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	379
Bst4CI	ACNGT	4 cut(s)	71, 143, 318, 431
Bst6I	CTCTTC	2 cut(s)	321, 410
BstAUI	TGTACA	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	588, 777, 781
BstDEI	CTNAG	2 cut(s)	297, 321
BstF5I	GGATG	2 cut(s)	175, 465
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 512, 596, 763, 772
BstNSI	RCATGY	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	132, 165, 242
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	691
BsuRI	GGCC	4 cut(s)	354, 634, 659, 779
BtsCI	GGATG	2 cut(s)	175, 465
BtsIMutI	CAGTG	1 cut(s)	148
BveI	ACCTGC	3 cut(s)	4, 704, 748
Cac8I	GCNNGC	3 cut(s)	588, 777, 781
CciI	TCATGA	1 cut(s)	108
CseI	GACGC	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	139, 214, 363
CviAII	CATG	4 cut(s)	109, 203, 391, 703
CviQI	GTAC	3 cut(s)	139, 214, 363
DdeI	CTNAG	2 cut(s)	297, 321
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DraI	TTTAAA	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	2 cut(s)	321, 410
EarI	CTCTTC	2 cut(s)	321, 410
Eco147I	AGGCCT	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	346
FaeI	CATG	4 cut(s)	112, 206, 394, 706
FatI	CATG	4 cut(s)	108, 202, 390, 702
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	5 cut(s)	11, 121, 179, 231, 632
FokI	GGATG	2 cut(s)	182, 452
Fsp4HI	GCNGC	5 cut(s)	11, 121, 179, 231, 632
FspBI	CTAG	2 cut(s)	50, 551
GluI	GCNGC	5 cut(s)	11, 121, 179, 231, 632
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	4 cut(s)	354, 634, 659, 779
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	1 cut(s)	671
Hin1II	CATG	4 cut(s)	112, 206, 394, 706
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	2 cut(s)	467, 728
Hpy166II	GTNNAC	4 cut(s)	55, 396, 408, 529
Hpy188I	TCNGA	2 cut(s)	345, 644
Hpy188III	TCNNGA	7 cut(s)	109, 191, 221, 251, 383, 518, 686
Hpy8I	GTNNAC	4 cut(s)	55, 396, 408, 529
HpyAV	CCTTC	4 cut(s)	143, 218, 227, 645
HpyCH4III	ACNGT	4 cut(s)	71, 143, 318, 431
HpyCH4V	TGCA	5 cut(s)	13, 37, 181, 564, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 512, 596, 763, 772
HpyF3I	CTNAG	2 cut(s)	297, 321
Hsp92II	CATG	4 cut(s)	112, 206, 394, 706
Kpn2I	TCCGGA	1 cut(s)	382
KpnI	GGTACC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	520, 763
Lsp1109I	GCAGC	3 cut(s)	132, 165, 242
LweI	GCATC	3 cut(s)	46, 596, 669
MaeI	CTAG	2 cut(s)	50, 551
MaeIII	GTNAC	2 cut(s)	65, 419
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	7 cut(s)	42, 158, 338, 427, 584, 679, 731
MflI	RGATCY	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	6 cut(s)	183, 346, 594, 617, 648, 722
MluNI	TGGCCA	1 cut(s)	779
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	68, 322, 365, 483, 573, 576, 742
Mox20I	TGGCCA	1 cut(s)	779
MroI	TCCGGA	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	4 cut(s)	95, 257, 498, 672
Msp20I	TGGCCA	1 cut(s)	779
MspI	CCGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	566
MwoI	GCNNNNNNNGC	5 cut(s)	302, 512, 596, 763, 772
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	112, 206, 394, 706
NlaIV	GGNNCC	2 cut(s)	364, 516
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	394
PagI	TCATGA	1 cut(s)	108
PaqCI	CACCTGC	2 cut(s)	704, 748
PceI	AGGCCT	1 cut(s)	354
PciI	ACATGT	1 cut(s)	390
PctI	GAATGC	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	12, 122, 180, 232, 633
PscI	ACATGT	1 cut(s)	390
PspFI	CCCAGC	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	364, 516
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	3 cut(s)	140, 215, 364
RsaNI	GTAC	3 cut(s)	139, 214, 363
SaqAI	TTAA	4 cut(s)	95, 257, 498, 672
SatI	GCNGC	5 cut(s)	11, 121, 179, 231, 632
Sau3AI	GATC	1 cut(s)	379
SfaNI	GCATC	3 cut(s)	46, 596, 669
SfcI	CTRYAG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	6 cut(s)	183, 346, 594, 617, 648, 722
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	2 cut(s)	264, 631
SspMI	CTAG	2 cut(s)	50, 551
StuI	AGGCCT	1 cut(s)	354
TaaI	ACNGT	4 cut(s)	71, 143, 318, 431
TaqI	TCGA	1 cut(s)	43
TasI	AATT	6 cut(s)	183, 346, 594, 617, 648, 722
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	634
Tru1I	TTAA	4 cut(s)	95, 257, 498, 672
Tru9I	TTAA	4 cut(s)	95, 257, 498, 672
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	4 cut(s)	10, 120, 178, 230
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	97, 186, 428
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	3 cut(s)	346, 648, 722
XceI	RCATGY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	2 cut(s)	50, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.