Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Forward (+)

80712599 .. 80717836

Gene Structure 5238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG577300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGCAACCGATGACATGCAGATTATGTCAACTTCTTCAGGAAAGTGAACCATCTCTTATGAACCGGAGGGTTCCAAGTTTTTCAACTCACATCTCATGTGACCACAGCTTAGATTCAGCTCCAAAACCATCAGACTACAAAAACATGTGTGGGTTTTGCCGTTTCGATAATCTGCGGTGTTTTTGGCCTGCAAGATGTTCTCATTGCTTGAATATCAGAAGACGCCAAAGAATGGTTAATAGAGGTGATCTGGTTATCATTGGCATCTCTGCTGGTGTAGCCCTTGGAATTTTGATAGCTGCACTCATATTTTTCGGAATAAGGTGGTACCAAAAGCATGCCAATCTTCGACGATGTGCTAATGAGCGTAGTTTAACAACTCTTCCTATACGCACAAATGGCTTAGGCACAAGCATCGACCTTAGTGTATCTCTTTCAACTAACATACCTATTCAAGGATCCGAGAAGGTTAAAAAAAGTTCTCCACTCTCCTGGTGGAATAATCACAACAAAGAACGATTTCCTTCTGCATCAGGCGTACTTAGATACTCTTACAAGGATGTGCAGAAAGCTACACAGAATTTCACAACAATTTTAGGACAAGGGGCTTTTGGTCCAGTATATAAAGCAACAATGCCTGCTGGAGAGGTAGTAGCTGTGAAGGTGCTTGCTTCAGATTCCAAGCAGGGAGAGAAAGAGTTCCAAACAGAGGTATCTTTGTTAGGAAGACTGCATCATCGAAATCTAGTGAACCTCGTAGGTTACTGTGTAGATAAAGGACAGTGTATGTTAATCTATGAGTTCATGAGTAATGGCAGCTTATCAAACCTCCTGTACAGTGAAGAACAACAGGTTTTGAGCTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCGCATGGAATAGAGTACCTTCATGAAGGGGCAGCCCCACCAGTCATACATCGTGATTTAAAGTCCGCTAATATATTGTTAGACCAATCAATGAGAGCTAAGGTTGCTGATTTTGGACTGTCTAAGGAAGAGGTGTTTGATGGTCGGAATTCAGGCCTCAAGGGTACCTATGGCTACATAGATCCGGAATACATGTCTACAAACAAGTTCACAATGAAGAGTGACATTTACAGTTTTGGGGTCATCATCTTTGAACTCATAACAGCCATCCACCCTCACCAAAACCTAATGGAATATGTTAACCTTGCTTCTATGGCTCCAGATGGTGTTGACGAAATACTTGATAACAAGCTAGTTGGGGAATGCAACCTTGAAGAAGTGAGGAGGCTGGCTAAAATTGCTCACAGATGCTTACTGAAATTACCGAGAAAGCGGCCTTCCATCGGAGAGATTTCACAGGCCATATTGAAGATTAAACAGATGCGTCTTGATAAAAGGGATACCATGTCTTTTGCAGGTGAAGAATTTTCACGGGCAGTAAGCAGAATAGAGGTTCAGCAGGTGGAGCTGGTTAGGCTGGCCAGCACAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

496

Amino Acids

55.9

Weight (kDa)

8.91

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	195 - 452	5.3e-51	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	197 - 451	4.8e-48	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1400, 1444
Acc36I	ACCTGC	2 cut(s)	1400, 1444
Acc65I	GGTACC	2 cut(s)	327, 1058
AccB1I	GGYRCC	2 cut(s)	327, 1058
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	1091
AccIII	TCCGGA	1 cut(s)	1078
AciI	CCGC	3 cut(s)	175, 960, 1327
AclWI	GGATC	3 cut(s)	453, 466, 1070
AcoI	YGGCCR	1 cut(s)	1473
AcsI	RAATTY	4 cut(s)	288, 580, 1042, 1418
AcuI	CTGAAG	2 cut(s)	20, 657
AcyI	GRCGYC	1 cut(s)	223
AfaI	GTAC	5 cut(s)	329, 540, 836, 911, 1060
AfiI	CCNNNNNNNGG	4 cut(s)	232, 455, 709, 1337
AflIII	ACRYGT	2 cut(s)	144, 1086
AgsI	TTSAA	7 cut(s)	84, 211, 438, 455, 1148, 1268, 1363
AjnI	CCWGG	1 cut(s)	491
AlwI	GGATC	3 cut(s)	453, 466, 1070
Aor13HI	TCCGGA	1 cut(s)	1078
AoxI	GGCC	5 cut(s)	185, 1048, 1328, 1353, 1473
ApeKI	GCWGC	4 cut(s)	299, 816, 874, 926
ApoI	RAATTY	4 cut(s)	288, 580, 1042, 1418
Asp700I	GAANNNNTTC	2 cut(s)	519, 698
Asp718I	GGTACC	2 cut(s)	327, 1058
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	3 cut(s)	257, 1163, 1424
AvaII	GGWCC	1 cut(s)	614
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	1 cut(s)	1475
BamHI	GGATCC	1 cut(s)	458
BanI	GGYRCC	2 cut(s)	327, 1058
BbsI	GAAGAC	2 cut(s)	226, 733
BbvI	GCAGC	4 cut(s)	286, 828, 861, 938
BccI	CCATC	6 cut(s)	58, 136, 1028, 1169, 1211, 1343
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	1 cut(s)	493
BciVI	GTATCC	1 cut(s)	1387
BfaI	CTAG	2 cut(s)	746, 1247
BfuAI	ACCTGC	2 cut(s)	1400, 1444
BfuI	GTATCC	1 cut(s)	1387
BisI	GCNGC	5 cut(s)	300, 817, 875, 927, 1328
BlsI	GCNGC	5 cut(s)	301, 818, 876, 928, 1329
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	5 cut(s)	72, 329, 460, 1060, 1212
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	6 cut(s)	273, 423, 539, 742, 1292, 1365
BpiI	GAAGAC	2 cut(s)	226, 733
BpmI	CTGGAG	2 cut(s)	663, 1197
Bpu10I	CCTNAGC	2 cut(s)	403, 993
BpuEI	CTTGAG	1 cut(s)	1037
BsaHI	GRCGYC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	2 cut(s)	63, 1078
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 455, 709, 1337
Bse1I	ACTGG	2 cut(s)	617, 935
Bse3DI	GCAATG	1 cut(s)	202
BseAI	TCCGGA	1 cut(s)	1078
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	3 cut(s)	565, 871, 1161
BseLI	CCNNNNNNNGG	4 cut(s)	232, 455, 709, 1337
BseMI	GCAATG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	617, 935
BseRI	GAGGAG	1 cut(s)	1291
BseXI	GCAGC	4 cut(s)	286, 828, 861, 938
BseYI	CCCAGC	1 cut(s)	861
BsgI	GTGCAG	2 cut(s)	285, 584
BshFI	GGCC	5 cut(s)	187, 1050, 1330, 1355, 1475
BshNI	GGYRCC	2 cut(s)	327, 1058
BsiSI	CCGG	2 cut(s)	64, 1079
BslI	CCNNNNNNNGG	4 cut(s)	232, 455, 709, 1337
BsmI	GAATGC	1 cut(s)	1262
BsnI	GGCC	5 cut(s)	187, 1050, 1330, 1355, 1475
Bsp13I	TCCGGA	1 cut(s)	1078
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	3 cut(s)	247, 458, 1075
BspACI	CCGC	3 cut(s)	175, 960, 1327
BspANI	GGCC	5 cut(s)	187, 1050, 1330, 1355, 1475
BspEI	TCCGGA	1 cut(s)	1078
BspHI	TCATGA	2 cut(s)	804, 916
BspLI	GGNNCC	5 cut(s)	72, 329, 460, 1060, 1212
BspMI	ACCTGC	2 cut(s)	1400, 1444
BspPI	GGATC	3 cut(s)	453, 466, 1070
BspT107I	GGYRCC	2 cut(s)	327, 1058
BsrDI	GCAATG	1 cut(s)	202
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	617, 935
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	3 cut(s)	247, 458, 1075
BssNI	GRCGYC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	5 cut(s)	767, 783, 839, 1014, 1127
Bst6I	CTCTTC	3 cut(s)	387, 1017, 1106
BstACI	GRCGYC	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	7 cut(s)	189, 339, 639, 669, 1284, 1473, 1477
BstDEI	CTNAG	6 cut(s)	109, 403, 422, 542, 993, 1017
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	3 cut(s)	565, 871, 1161
BstKTI	GATC	3 cut(s)	250, 461, 1078
BstMBI	GATC	3 cut(s)	247, 458, 1075
BstMWI	GCNNNNNNNGC	7 cut(s)	278, 399, 998, 1208, 1292, 1459, 1468
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	4 cut(s)	18, 148, 341, 1090
BstSCI	CCNGG	1 cut(s)	491
BstV1I	GCAGC	4 cut(s)	286, 828, 861, 938
BstV2I	GAAGAC	2 cut(s)	226, 733
BstX2I	RGATCY	2 cut(s)	458, 1075
BstXI	CCANNNNNNTGG	1 cut(s)	492
BstYI	RGATCY	2 cut(s)	458, 1075
BsuI	GTATCC	1 cut(s)	1387
BsuRI	GGCC	5 cut(s)	187, 1050, 1330, 1355, 1475
BtsCI	GGATG	3 cut(s)	565, 871, 1161
BtsIMutI	CAGTG	2 cut(s)	788, 844
BveI	ACCTGC	2 cut(s)	1400, 1444
Cac8I	GCNNGC	7 cut(s)	189, 339, 639, 669, 1284, 1473, 1477
CciI	TCATGA	2 cut(s)	804, 916
Cfr13I	GGNCC	1 cut(s)	614
CseI	GACGC	2 cut(s)	231, 1367
Csp6I	GTAC	5 cut(s)	328, 539, 835, 910, 1059
CviAII	CATG	9 cut(s)	15, 96, 145, 338, 805, 899, 917, 1087, 1399
CviQI	GTAC	5 cut(s)	328, 539, 835, 910, 1059
DdeI	CTNAG	6 cut(s)	109, 403, 422, 542, 993, 1017
DpnI	GATC	3 cut(s)	249, 460, 1077
DpnII	GATC	3 cut(s)	247, 458, 1075
DraI	TTTAAA	1 cut(s)	954
EaeI	YGGCCR	1 cut(s)	1473
Eam1104I	CTCTTC	3 cut(s)	387, 1017, 1106
EarI	CTCTTC	3 cut(s)	387, 1017, 1106
Eco130I	CCWWGG	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	1050
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	2 cut(s)	20, 657
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	1042
EcoRII	CCWGG	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	9 cut(s)	18, 99, 148, 341, 808, 902, 920, 1090, 1402
FatI	CATG	9 cut(s)	14, 95, 144, 337, 804, 898, 916, 1086, 1398
FblI	GTMKAC	1 cut(s)	1091
Fnu4HI	GCNGC	5 cut(s)	300, 817, 875, 927, 1328
FokI	GGATG	3 cut(s)	572, 878, 1148
Fsp4HI	GCNGC	5 cut(s)	300, 817, 875, 927, 1328
FspBI	CTAG	2 cut(s)	746, 1247
GluI	GCNGC	5 cut(s)	300, 817, 875, 927, 1328
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	2 cut(s)	663, 1197
HaeIII	GGCC	5 cut(s)	187, 1050, 1330, 1355, 1475
HapII	CCGG	2 cut(s)	64, 1079
HgaI	GACGC	2 cut(s)	231, 1367
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	9 cut(s)	18, 99, 148, 341, 808, 902, 920, 1090, 1402
HincII	GTYRAC	3 cut(s)	29, 1195, 1225
HindII	GTYRAC	3 cut(s)	29, 1195, 1225
HinfI	GANTC	2 cut(s)	113, 677
HpaI	GTTAAC	1 cut(s)	1195
HpaII	CCGG	2 cut(s)	64, 1079
HphI	GGTGA	3 cut(s)	257, 1163, 1424
Hpy166II	GTNNAC	7 cut(s)	29, 47, 751, 1092, 1104, 1195, 1225
Hpy188I	TCNGA	7 cut(s)	133, 218, 317, 463, 676, 1041, 1340
Hpy188III	TCNNGA	8 cut(s)	38, 805, 887, 917, 947, 1079, 1214, 1382
Hpy8I	GTNNAC	7 cut(s)	29, 47, 751, 1092, 1104, 1195, 1225
Hpy99I	CGWCG	1 cut(s)	354
HpyAV	CCTTC	6 cut(s)	460, 534, 655, 914, 923, 1341
HpyCH4III	ACNGT	5 cut(s)	767, 783, 839, 1014, 1127
HpyF10VI	GCNNNNNNNGC	7 cut(s)	278, 399, 998, 1208, 1292, 1459, 1468
HpyF3I	CTNAG	6 cut(s)	109, 403, 422, 542, 993, 1017
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	9 cut(s)	18, 99, 148, 341, 808, 902, 920, 1090, 1402
Kpn2I	TCCGGA	1 cut(s)	1078
KpnI	GGTACC	2 cut(s)	331, 1062
KspAI	GTTAAC	1 cut(s)	1195
Kzo9I	GATC	3 cut(s)	247, 458, 1075
LmnI	GCTCC	3 cut(s)	124, 1216, 1459
Lsp1109I	GCAGC	4 cut(s)	286, 828, 861, 938
LweI	GCATC	6 cut(s)	273, 423, 539, 742, 1292, 1365
MaeI	CTAG	2 cut(s)	746, 1247
MaeIII	GTNAC	3 cut(s)	98, 761, 1115
MalI	GATC	3 cut(s)	249, 460, 1077
MboI	GATC	3 cut(s)	247, 458, 1075
MflI	RGATCY	2 cut(s)	458, 1075
MlsI	TGGCCA	1 cut(s)	1475
MluCI	AATT	8 cut(s)	288, 580, 591, 879, 1042, 1290, 1313, 1418
MluNI	TGGCCA	1 cut(s)	1475
MmeI	TCCRAC	1 cut(s)	1019
Mox20I	TGGCCA	1 cut(s)	1475
MroI	TCCGGA	1 cut(s)	1078
MroXI	GAANNNNTTC	2 cut(s)	519, 698
MscI	TGGCCA	1 cut(s)	1475
MseI	TTAA	7 cut(s)	237, 374, 471, 791, 953, 1194, 1368
Msp20I	TGGCCA	1 cut(s)	1475
MspI	CCGG	2 cut(s)	64, 1079
MspR9I	CCNGG	1 cut(s)	493
Mva1269I	GAATGC	1 cut(s)	1262
MvaI	CCWGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	7 cut(s)	278, 399, 998, 1208, 1292, 1459, 1468
NdeII	GATC	3 cut(s)	247, 458, 1075
NlaIII	CATG	9 cut(s)	18, 99, 148, 341, 808, 902, 920, 1090, 1402
NlaIV	GGNNCC	5 cut(s)	72, 329, 460, 1060, 1212
NmuCI	GTSAC	2 cut(s)	98, 1115
NspI	RCATGY	4 cut(s)	18, 148, 341, 1090
PaeI	GCATGC	1 cut(s)	341
PagI	TCATGA	2 cut(s)	804, 916
PaqCI	CACCTGC	2 cut(s)	1400, 1444
PceI	AGGCCT	1 cut(s)	1050
PciI	ACATGT	2 cut(s)	144, 1086
PctI	GAATGC	1 cut(s)	1262
PdmI	GAANNNNTTC	2 cut(s)	519, 698
PfeI	GAWTC	2 cut(s)	113, 677
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	5 cut(s)	301, 818, 876, 928, 1329
PscI	ACATGT	2 cut(s)	144, 1086
Psp6I	CCWGG	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	491
PspN4I	GGNNCC	5 cut(s)	72, 329, 460, 1060, 1212
PspPI	GGNCC	1 cut(s)	614
PsuI	RGATCY	2 cut(s)	458, 1075
RsaI	GTAC	5 cut(s)	329, 540, 836, 911, 1060
RsaNI	GTAC	5 cut(s)	328, 539, 835, 910, 1059
SaqAI	TTAA	7 cut(s)	237, 374, 471, 791, 953, 1194, 1368
SatI	GCNGC	5 cut(s)	300, 817, 875, 927, 1328
Sau3AI	GATC	3 cut(s)	247, 458, 1075
Sau96I	GGNCC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	493
SfaNI	GCATC	6 cut(s)	273, 423, 539, 742, 1292, 1365
SinI	GGWCC	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	1052
SmoI	CTYRAG	1 cut(s)	1052
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	8 cut(s)	288, 580, 591, 879, 1042, 1290, 1313, 1418
SseBI	AGGCCT	1 cut(s)	1050
SsiI	CCGC	3 cut(s)	175, 960, 1327
SspMI	CTAG	2 cut(s)	746, 1247
StuI	AGGCCT	1 cut(s)	1050
StyD4I	CCNGG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	5 cut(s)	767, 783, 839, 1014, 1127
TaqI	TCGA	4 cut(s)	165, 349, 417, 739
TasI	AATT	8 cut(s)	288, 580, 591, 879, 1042, 1290, 1313, 1418
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	1 cut(s)	1330
TfiI	GAWTC	2 cut(s)	113, 677
Tru1I	TTAA	7 cut(s)	237, 374, 471, 791, 953, 1194, 1368
Tru9I	TTAA	7 cut(s)	237, 374, 471, 791, 953, 1194, 1368
TscAI	CASTG	2 cut(s)	788, 844
TseFI	GTSAC	2 cut(s)	98, 1115
TseI	GCWGC	4 cut(s)	299, 816, 874, 926
Tsp45I	GTSAC	2 cut(s)	98, 1115
TspDTI	ATGAA	6 cut(s)	74, 793, 882, 905, 933, 1124
TspRI	CASTG	2 cut(s)	788, 844
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	614
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	4 cut(s)	288, 580, 1042, 1418
XceI	RCATGY	4 cut(s)	18, 148, 341, 1090
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
XmiI	GTMKAC	1 cut(s)	1091
XmnI	GAANNNNTTC	2 cut(s)	519, 698
XspI	CTAG	2 cut(s)	746, 1247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.