Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Forward (+)

23837498 .. 23841245

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G247800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGTTCATCAAACTGATCTTGTTATCATCGGCGTCTCTGTTGGCGTAGCCCTTGGAATTTTGATAGCTTCACTCATATTTTTTGGCATAAGGTGGTATAGAAAGCGTGCTCATCTTCGGCGATGTGCTAATGAGCGTAGTTTGACAACTCTTCCGATACAGGCAAATGGCTTAGGTACAAGCACTGACTATAGCGCATCTCTTTCAACTTCCAAAGCTATTCAAGGATCCGAGAACCTTCAAAAAAATTCTCCGCTCTCTTGGTGGAATCATCAAAACAAAGATCGATTTGTTTCTGCGCCAGGCGTACTTAGATACTCTTACAAGGATATACAGAAAGCTACTCAAAATTTTACTACCCTTCTGGGACAAGGTTCTTTTGGTCCGGTGTATAAAGCAAAAATGGCTGCTGGAGAGGTAGTAGCTGTGAAGGTGCTTGCTTCCAATTCTAAGCAGGGAGAGAAAGAGTTCCAAACAGAGGTATCTCTGCTAGGAAGACTGCATCATCGCAATCTAGTGAATCTACTAGGATATTGTGTAGATAAGGGGCAGCATATGTTAATCTACGAGTTCATGCGTAATGGCAGCTTATCAAATCTTCTGTACAGTGAAGAACAACAGGTCTTGAGCTGGGATGAAAGGCTACAAATTGCTCTGGATATTTCACATGGAATTGAGTACCTTCATGAAGGGGCAGTCCCACCAGTCATACATCGTGATTTAAAGTCTGCTAATATACTTTTAGACCAGTCAATGAGAGCTAAGGTTGCTGATTTTGGATTGTCTAAGGAAGAGGTTTTTGATGGCCGGAATTCTGGCCTGAAAGGTACTTATGGCTACATAGACCCAGTCTACATATCTACAAACCAGTTCACAATGAAGAGCGACATCTACAGTTTTGGAATTATCATATTTGAGCTAATAACAGCCATCCACCCTCACCAAAACCTAATGGAATATGTTAATCTTGCTGCTATGGCCCCAGATGGTGTAGATGAAATACTTGATAAGCAACTAGTTGGAGAGTGCAAACTTGACGAAGTGAGGAGGCTAGCTAGAATCGCACACAAATGCTTAGAGCAATTACCAAGAAAGAGACCTTCCATAGGAGAAGTTTCACAGGGTATATTGAAGATAAAACAGAGGCGTCTTGCCAAAGAAGATACCATGTCTTTCGCAGGCGAAGAATTTTCAAGGGCTGTAAGCCGAATAGAGATTCAGCAGGTGGAGCTGAGTAGGATAGCTAGCATGAAAGATAGAGCGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

424

Amino Acids

47.46

Weight (kDa)

8.82

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1213
Acc36I	ACCTGC	1 cut(s)	1213
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	2 cut(s)	222, 235
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	5 cut(s)	57, 247, 349, 811, 1187
AcyI	GRCGYC	2 cut(s)	33, 1147
AfaI	GTAC	5 cut(s)	178, 309, 605, 680, 829
AfiI	CCNNNNNNNGG	2 cut(s)	478, 1106
AgsI	TTSAA	5 cut(s)	207, 224, 242, 1132, 1194
AhlI	ACTAGT	1 cut(s)	1015
AjnI	CCWGG	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	40, 1090
AlwI	GGATC	2 cut(s)	222, 235
AoxI	GGCC	3 cut(s)	805, 817, 978
ApeKI	GCWGC	4 cut(s)	407, 550, 585, 971
ApoI	RAATTY	5 cut(s)	57, 247, 349, 811, 1187
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	197, 301
AspS9I	GGNCC	2 cut(s)	383, 979
AsuHPI	GGTGA	1 cut(s)	932
AsuNHI	GCTAGC	2 cut(s)	1051, 1244
AvaII	GGWCC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BamHI	GGATCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	4 cut(s)	394, 562, 597, 958
BccI	CCATC	3 cut(s)	797, 938, 980
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	40, 1090
BcuI	ACTAGT	1 cut(s)	1015
BfaI	CTAG	7 cut(s)	491, 515, 527, 1016, 1052, 1056, 1245
BfmI	CTRYAG	2 cut(s)	190, 892
BfuAI	ACCTGC	1 cut(s)	1213
BisI	GCNGC	4 cut(s)	408, 551, 586, 972
BlsI	GCNGC	4 cut(s)	409, 552, 587, 973
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	383, 979
BmiI	GGNNCC	2 cut(s)	229, 981
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	206, 511
BmtI	GCTAGC	2 cut(s)	1055, 1248
BmuI	ACTGGG	1 cut(s)	842
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	2 cut(s)	172, 762
BpuEI	CTTGAG	1 cut(s)	646
Bsa29I	ATCGAT	1 cut(s)	286
BsaHI	GRCGYC	2 cut(s)	33, 1147
BsaI	GGTCTC	1 cut(s)	1090
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 1106
Bse1I	ACTGG	4 cut(s)	704, 748, 848, 868
BseBI	CCWGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	640, 930
BseLI	CCNNNNNNNGG	2 cut(s)	478, 1106
BseMII	CTCAG	1 cut(s)	1223
BseNI	ACTGG	4 cut(s)	704, 748, 848, 868
BseRI	GAGGAG	1 cut(s)	1060
BseXI	GCAGC	4 cut(s)	394, 562, 597, 958
BseYI	CCCAGC	1 cut(s)	630
BshFI	GGCC	3 cut(s)	807, 819, 980
BshVI	ATCGAT	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	386, 808
BslFI	GGGAC	2 cut(s)	381, 683
BslI	CCNNNNNNNGG	2 cut(s)	478, 1106
BsmAI	GTCTC	2 cut(s)	40, 1090
BsmBI	CGTCTC	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	381, 683
BsnI	GGCC	3 cut(s)	807, 819, 980
Bso31I	GGTCTC	1 cut(s)	1090
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	16, 227, 283
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	3 cut(s)	807, 819, 980
BspCNI	CTCAG	1 cut(s)	1224
BspDI	ATCGAT	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	229, 981
BspMI	ACCTGC	1 cut(s)	1213
BspOI	GCTAGC	2 cut(s)	1055, 1248
BspPI	GGATC	2 cut(s)	222, 235
BspQI	GCTCTTC	1 cut(s)	875
BspTNI	GGTCTC	1 cut(s)	1090
BsrBI	CCGCTC	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	4 cut(s)	704, 748, 848, 868
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	16, 227, 283
BssNI	GRCGYC	2 cut(s)	33, 1147
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	608, 896
Bst6I	CTCTTC	3 cut(s)	156, 786, 875
BstACI	GRCGYC	2 cut(s)	33, 1147
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	5 cut(s)	108, 438, 1053, 1180, 1246
BstDEI	CTNAG	7 cut(s)	172, 311, 450, 762, 786, 1075, 1232
BstENI	CCTNNNNNAGG	1 cut(s)	1104
BstF5I	GGATG	2 cut(s)	640, 930
BstHHI	GCGC	2 cut(s)	197, 301
BstKTI	GATC	3 cut(s)	19, 230, 286
BstMAI	GTCTC	2 cut(s)	40, 1090
BstMBI	GATC	3 cut(s)	16, 227, 283
BstMWI	GCNNNNNNNGC	5 cut(s)	404, 767, 977, 1061, 1228
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	2 cut(s)	190, 892
BstV1I	GCAGC	4 cut(s)	394, 562, 597, 958
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	807, 819, 980
BsuTUI	ATCGAT	1 cut(s)	286
BtgZI	GCGATG	2 cut(s)	136, 491
BtsCI	GGATG	2 cut(s)	640, 930
BtsIMutI	CAGTG	2 cut(s)	183, 613
BveI	ACCTGC	1 cut(s)	1213
Cac8I	GCNNGC	5 cut(s)	108, 438, 1053, 1180, 1246
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	197, 301
Cfr13I	GGNCC	2 cut(s)	383, 979
ClaI	ATCGAT	1 cut(s)	286
CseI	GACGC	2 cut(s)	22, 1136
Csp6I	GTAC	5 cut(s)	177, 308, 604, 679, 828
CviAII	CATG	5 cut(s)	574, 668, 686, 1168, 1249
CviQI	GTAC	5 cut(s)	177, 308, 604, 679, 828
DdeI	CTNAG	7 cut(s)	172, 311, 450, 762, 786, 1075, 1232
DpnI	GATC	3 cut(s)	18, 229, 285
DpnII	GATC	3 cut(s)	16, 227, 283
DraI	TTTAAA	1 cut(s)	723
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	3 cut(s)	156, 786, 875
EarI	CTCTTC	3 cut(s)	156, 786, 875
Eco130I	CCWWGG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	1090
Eco47I	GGWCC	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	1104
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	5 cut(s)	577, 671, 689, 1171, 1252
FaqI	GGGAC	2 cut(s)	381, 683
FatI	CATG	5 cut(s)	573, 667, 685, 1167, 1248
FauNDI	CATATG	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	408, 551, 586, 972
FokI	GGATG	2 cut(s)	647, 917
Fsp4HI	GCNGC	4 cut(s)	408, 551, 586, 972
FspBI	CTAG	7 cut(s)	491, 515, 527, 1016, 1052, 1056, 1245
GlaI	GCGC	2 cut(s)	196, 300
GluI	GCNGC	4 cut(s)	408, 551, 586, 972
GsaI	CCCAGC	1 cut(s)	634
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	807, 819, 980
HapII	CCGG	2 cut(s)	386, 808
HgaI	GACGC	2 cut(s)	22, 1136
HhaI	GCGC	2 cut(s)	197, 301
Hin1I	GRCGYC	2 cut(s)	33, 1147
Hin1II	CATG	5 cut(s)	577, 671, 689, 1171, 1252
Hin6I	GCGC	2 cut(s)	195, 299
HinP1I	GCGC	2 cut(s)	195, 299
HinfI	GANTC	4 cut(s)	268, 520, 1059, 1216
HpaII	CCGG	2 cut(s)	386, 808
HphI	GGTGA	1 cut(s)	932
Hpy166II	GTNNAC	2 cut(s)	853, 873
Hpy188I	TCNGA	2 cut(s)	156, 232
Hpy188III	TCNNGA	4 cut(s)	625, 656, 686, 716
Hpy8I	GTNNAC	2 cut(s)	853, 873
HpyAV	CCTTC	6 cut(s)	248, 371, 424, 683, 692, 1110
HpyCH4III	ACNGT	2 cut(s)	608, 896
HpyCH4V	TGCA	2 cut(s)	502, 1029
HpyF10VI	GCNNNNNNNGC	5 cut(s)	404, 767, 977, 1061, 1228
HpyF3I	CTNAG	7 cut(s)	172, 311, 450, 762, 786, 1075, 1232
Hsp92I	GRCGYC	2 cut(s)	33, 1147
Hsp92II	CATG	5 cut(s)	577, 671, 689, 1171, 1252
HspAI	GCGC	2 cut(s)	195, 299
Kzo9I	GATC	3 cut(s)	16, 227, 283
LguI	GCTCTTC	1 cut(s)	875
LmnI	GCTCC	1 cut(s)	1228
Lsp1109I	GCAGC	4 cut(s)	394, 562, 597, 958
LweI	GCATC	2 cut(s)	206, 511
MaeI	CTAG	7 cut(s)	491, 515, 527, 1016, 1052, 1056, 1245
MalI	GATC	3 cut(s)	18, 229, 285
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	3 cut(s)	16, 227, 283
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	1000
MnlI	CCTC	7 cut(s)	409, 472, 787, 948, 1038, 1041, 1137
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	3 cut(s)	560, 722, 963
MslI	CAYNNNNRTG	1 cut(s)	1069
MspI	CCGG	2 cut(s)	386, 808
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	5 cut(s)	404, 767, 977, 1061, 1228
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	3 cut(s)	16, 227, 283
NheI	GCTAGC	2 cut(s)	1051, 1244
NlaIII	CATG	5 cut(s)	577, 671, 689, 1171, 1252
NlaIV	GGNNCC	2 cut(s)	229, 981
PagI	TCATGA	1 cut(s)	685
PaqCI	CACCTGC	1 cut(s)	1213
PciSI	GCTCTTC	1 cut(s)	875
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	4 cut(s)	268, 520, 1059, 1216
PflFI	GACNNNGTC	1 cut(s)	848
PkrI	GCNGC	4 cut(s)	409, 552, 587, 973
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	229, 981
PspPI	GGNCC	2 cut(s)	383, 979
PsuI	RGATCY	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	848
RsaI	GTAC	5 cut(s)	178, 309, 605, 680, 829
RsaNI	GTAC	5 cut(s)	177, 308, 604, 679, 828
RseI	CAYNNNNRTG	1 cut(s)	1069
SapI	GCTCTTC	1 cut(s)	875
SaqAI	TTAA	3 cut(s)	560, 722, 963
SatI	GCNGC	4 cut(s)	408, 551, 586, 972
Sau3AI	GATC	3 cut(s)	16, 227, 283
Sau96I	GGNCC	2 cut(s)	383, 979
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	2 cut(s)	206, 511
SfcI	CTRYAG	2 cut(s)	190, 892
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	1069
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
SpeI	ACTAGT	1 cut(s)	1015
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	7 cut(s)	491, 515, 527, 1016, 1052, 1056, 1245
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	608, 896
TaqI	TCGA	1 cut(s)	286
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	4 cut(s)	268, 520, 1059, 1216
Tru1I	TTAA	3 cut(s)	560, 722, 963
Tru9I	TTAA	3 cut(s)	560, 722, 963
TscAI	CASTG	2 cut(s)	190, 613
TseI	GCWGC	4 cut(s)	407, 550, 585, 971
TspDTI	ATGAA	7 cut(s)	562, 651, 674, 702, 893, 1011, 1265
TspRI	CASTG	2 cut(s)	190, 613
Tth111I	GACNNNGTC	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	1104
XapI	RAATTY	5 cut(s)	57, 247, 349, 811, 1187
XmiI	GTMKAC	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	7 cut(s)	491, 515, 527, 1016, 1052, 1056, 1245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.