Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Reverse (-)

5370867 .. 5376712

Gene Structure 5846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1076200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGTTCATCAAACTGATCTTGTTATCATTGGCGTCTCTGTTGGTCTAGCCCTCGGAATTTTGATTGCTGTACTCATATTTTTTGGCATAAGGTGGTATAAAAAGCGTGCTAATCTACGACAATGTGCTAATGAGCGTAGTCTTACCACTCTACCTATACGCACAAATGGCTTAAGTACAACCACTGACTATAGTGCGTCTCTTTCAACTTCCAAAGCTATTCAAGGAACCGAGAACCTTCAAAAAAGTTCTCCGCTCTCTTGGTGGAGTCATCACAGCAAAGATCGATTTGCTTCTGCATCAGGCGTACTTAGATACTCTTACAAAGCTGTACAGAAAGCCACTCAGAATTTCACAACCCTTTTGGGACAAGGTTCATTTGGTCCGGTATATAAAGCAAAAATGCCTGCTGGAGAGGTAGTAGCTGTTAAGGTCCTTGCTTCGAATTCTAAGCAGGGAGAGAAAGAGTTCCAAAGAGAGGTATCTCTGCTAGGAAGACTGCATCATCGGAATCTAGTGAATCTAGTAGGATATTGTGTAGATAAAGGGCAGCGTATGCTAATCTACGAGTTCTTGAGTAATGGAAGCTTATCGAACCTTCTGTACAGTGAAGAACAACAGGTTTTGAGCTGGGATGAAAGGCTACAAATTGCTCTTGACATTTCACATGGAATTGAATACCTTCATGAAGGGGCTGTCCCACCAGTTATACATCGTGACTTAAAATCTGCTAATATACTGTTAGACGAGTCGTTGAGAGCTAAGGTTGCTGATTTCGGATTGTCTAAGGAAGAGGTCTATGATGGCCGGAATTCTGGTCTGAAAGGTACCTACGGCTACATAGATCCGGTATACATATCTACAAACCAGTTTACAATGAAGAGTGACATCTACAGTTTCGGAATTATCATATTTGAGCTAATTACAGCCATCCACCCTCACCAAAACTTGATGGAATACGTTAGTCTCGCTGCTATGGCTCCAGATGGCGTTGATGAAATACTTGATAAGCAACTGGTTGGAGAATGCAACATCGAAGAAGTGAGGATGCTAGCTAGAGTTGCTCACAAATGCTTACATCAATTACCGAGAAAGCGGCCTTCCATAGCAGAAGTGTCCCAGGCTATATTGAAGATAAAACAGCGGCGTCTCGCTAAAGAAGATACCATGTCTTTTGCAGGTGAGGAGTTTTCAAGGGCTGTAAGCCGAATAGAAGTTCAGCAGGTGGAGCTGAGTAGAATAGCGAGCGTGAACGAAAGAGTAACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

424

Amino Acids

47.3

Weight (kDa)

8.67

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	118 - 375	2e-49	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	120 - 374	1.1e-47	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1169, 1213
Acc36I	ACCTGC	2 cut(s)	1169, 1213
Acc65I	GGTACC	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	827
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	3 cut(s)	254, 1096, 1144
AclWI	GGATC	1 cut(s)	839
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	4 cut(s)	57, 349, 445, 811
AcyI	GRCGYC	2 cut(s)	33, 1147
AfaI	GTAC	6 cut(s)	72, 178, 309, 333, 605, 829
AfiI	CCNNNNNNNGG	1 cut(s)	478
AflII	CTTAAG	1 cut(s)	172
AgsI	TTSAA	6 cut(s)	207, 224, 242, 677, 1132, 1194
AjnI	CCWGG	1 cut(s)	1119
AluBI	AGCT	9 cut(s)	218, 329, 425, 588, 630, 761, 919, 1055, 1231
AluI	AGCT	9 cut(s)	218, 329, 425, 588, 630, 761, 919, 1055, 1231
Alw26I	GTCTC	4 cut(s)	40, 204, 971, 1154
AlwI	GGATC	1 cut(s)	839
AoxI	GGCC	2 cut(s)	805, 1097
ApeKI	GCWGC	2 cut(s)	550, 971
ApoI	RAATTY	4 cut(s)	57, 349, 445, 811
Asp700I	GAANNNNTTC	2 cut(s)	467, 681
Asp718I	GGTACC	1 cut(s)	827
AspS9I	GGNCC	2 cut(s)	383, 433
AsuHPI	GGTGA	2 cut(s)	932, 1193
AsuII	TTCGAA	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	1051
AvaII	GGWCC	2 cut(s)	383, 433
BanI	GGYRCC	1 cut(s)	827
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	562, 958
BccI	CCATC	4 cut(s)	797, 938, 946, 980
BceAI	ACGGC	1 cut(s)	850
BciT130I	CCWGG	1 cut(s)	1121
BcoDI	GTCTC	4 cut(s)	40, 204, 971, 1154
BfaI	CTAG	6 cut(s)	47, 491, 515, 524, 1052, 1056
BfmI	CTRYAG	2 cut(s)	190, 892
BfrI	CTTAAG	1 cut(s)	172
BfuAI	ACCTGC	2 cut(s)	1169, 1213
BisI	GCNGC	4 cut(s)	551, 972, 1097, 1145
BlsI	GCNGC	4 cut(s)	552, 973, 1098, 1146
Bme1390I	CCNGG	1 cut(s)	1121
Bme18I	GGWCC	2 cut(s)	383, 433
BmgT120I	GGNCC	2 cut(s)	383, 433
BmiI	GGNNCC	3 cut(s)	229, 829, 981
BmrFI	CCNGG	1 cut(s)	1121
BmsI	GCATC	3 cut(s)	308, 511, 1038
BmtI	GCTAGC	1 cut(s)	1055
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	2 cut(s)	432, 966
Bpu10I	CCTNAGC	1 cut(s)	762
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	595
Bsa29I	ATCGAT	1 cut(s)	286
BsaHI	GRCGYC	2 cut(s)	33, 1147
BsaJI	CCNNGG	2 cut(s)	52, 1119
BsaWI	WCCGGW	2 cut(s)	385, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	3 cut(s)	704, 868, 1020
BseBI	CCWGG	1 cut(s)	1121
BseCI	ATCGAT	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	52, 1119
BseGI	GGATG	3 cut(s)	640, 930, 1053
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	359, 1223
BseNI	ACTGG	3 cut(s)	704, 868, 1020
BseRI	GAGGAG	1 cut(s)	1199
BseXI	GCAGC	2 cut(s)	562, 958
BseYI	CCCAGC	1 cut(s)	630
BshFI	GGCC	2 cut(s)	807, 1099
BshNI	GGYRCC	1 cut(s)	827
BshVI	ATCGAT	1 cut(s)	286
BsiSI	CCGG	3 cut(s)	386, 808, 848
BslFI	GGGAC	3 cut(s)	381, 683, 1102
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	4 cut(s)	40, 204, 971, 1154
BsmBI	CGTCTC	3 cut(s)	40, 204, 1154
BsmFI	GGGAC	3 cut(s)	381, 683, 1102
BsmI	GAATGC	1 cut(s)	1031
BsnI	GGCC	2 cut(s)	807, 1099
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1407I	TGTACA	2 cut(s)	331, 603
Bsp143I	GATC	3 cut(s)	16, 283, 844
BspACI	CCGC	3 cut(s)	254, 1096, 1144
BspANI	GGCC	2 cut(s)	807, 1099
BspCNI	CTCAG	2 cut(s)	358, 1224
BspDI	ATCGAT	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	229, 829, 981
BspMI	ACCTGC	2 cut(s)	1169, 1213
BspOI	GCTAGC	1 cut(s)	1055
BspPI	GGATC	1 cut(s)	839
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	827
BspTI	CTTAAG	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	256
BsrGI	TGTACA	2 cut(s)	331, 603
BsrI	ACTGG	3 cut(s)	704, 868, 1020
BssECI	CCNNGG	2 cut(s)	52, 1119
BssMI	GATC	3 cut(s)	16, 283, 844
BssNAI	GTATAC	1 cut(s)	853
BssNI	GRCGYC	2 cut(s)	33, 1147
Bst1107I	GTATAC	1 cut(s)	853
Bst2UI	CCWGG	1 cut(s)	1121
Bst4CI	ACNGT	3 cut(s)	608, 741, 896
Bst6I	CTCTTC	2 cut(s)	786, 875
BstACI	GRCGYC	2 cut(s)	33, 1147
BstAFI	CTTAAG	1 cut(s)	172
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstAUI	TGTACA	2 cut(s)	331, 603
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	108, 408, 1053, 1246
BstDEI	CTNAG	6 cut(s)	311, 345, 450, 762, 786, 1232
BstF5I	GGATG	3 cut(s)	640, 930, 1053
BstKTI	GATC	3 cut(s)	19, 286, 847
BstMAI	GTCTC	4 cut(s)	40, 204, 971, 1154
BstMBI	GATC	3 cut(s)	16, 283, 844
BstMWI	GCNNNNNNNGC	6 cut(s)	168, 556, 767, 977, 1061, 1228
BstNI	CCWGG	1 cut(s)	1121
BstSCI	CCNGG	1 cut(s)	1119
BstSFI	CTRYAG	2 cut(s)	190, 892
BstV1I	GCAGC	2 cut(s)	562, 958
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BstZ17I	GTATAC	1 cut(s)	853
Bsu15I	ATCGAT	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	807, 1099
BsuTUI	ATCGAT	1 cut(s)	286
BtsCI	GGATG	3 cut(s)	640, 930, 1053
BtsIMutI	CAGTG	2 cut(s)	183, 613
BveI	ACCTGC	2 cut(s)	1169, 1213
Cac8I	GCNNGC	4 cut(s)	108, 408, 1053, 1246
CciI	TCATGA	1 cut(s)	685
Cfr13I	GGNCC	2 cut(s)	383, 433
ClaI	ATCGAT	1 cut(s)	286
CseI	GACGC	3 cut(s)	22, 186, 1136
Csp6I	GTAC	6 cut(s)	71, 177, 308, 332, 604, 828
CviAII	CATG	3 cut(s)	668, 686, 1168
CviQI	GTAC	6 cut(s)	71, 177, 308, 332, 604, 828
DdeI	CTNAG	6 cut(s)	311, 345, 450, 762, 786, 1232
DpnI	GATC	3 cut(s)	18, 285, 846
DpnII	GATC	3 cut(s)	16, 283, 844
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	2 cut(s)	786, 875
EarI	CTCTTC	2 cut(s)	786, 875
Eco47I	GGWCC	2 cut(s)	383, 433
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRI	GAATTC	2 cut(s)	445, 811
EcoRII	CCWGG	1 cut(s)	1119
Esp3I	CGTCTC	3 cut(s)	40, 204, 1154
FaeI	CATG	3 cut(s)	671, 689, 1171
FaqI	GGGAC	3 cut(s)	381, 683, 1102
FatI	CATG	3 cut(s)	667, 685, 1167
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	551, 972, 1097, 1145
FokI	GGATG	3 cut(s)	647, 917, 1060
Fsp4HI	GCNGC	4 cut(s)	551, 972, 1097, 1145
FspBI	CTAG	6 cut(s)	47, 491, 515, 524, 1052, 1056
GluI	GCNGC	4 cut(s)	551, 972, 1097, 1145
GsaI	CCCAGC	1 cut(s)	634
GsuI	CTGGAG	2 cut(s)	432, 966
HaeIII	GGCC	2 cut(s)	807, 1099
HapII	CCGG	3 cut(s)	386, 808, 848
HgaI	GACGC	3 cut(s)	22, 186, 1136
Hin1I	GRCGYC	2 cut(s)	33, 1147
Hin1II	CATG	3 cut(s)	671, 689, 1171
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	4 cut(s)	268, 511, 520, 749
HpaII	CCGG	3 cut(s)	386, 808, 848
HphI	GGTGA	2 cut(s)	932, 1193
Hpy166II	GTNNAC	3 cut(s)	853, 873, 1252
Hpy188I	TCNGA	6 cut(s)	56, 348, 510, 779, 822, 902
Hpy188III	TCNNGA	5 cut(s)	574, 656, 686, 716, 983
Hpy8I	GTNNAC	3 cut(s)	853, 873, 1252
HpyAV	CCTTC	5 cut(s)	248, 608, 683, 692, 1110
HpyCH4III	ACNGT	3 cut(s)	608, 741, 896
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	4 cut(s)	299, 502, 1029, 1178
HpyF10VI	GCNNNNNNNGC	6 cut(s)	168, 556, 767, 977, 1061, 1228
HpyF3I	CTNAG	6 cut(s)	311, 345, 450, 762, 786, 1232
HpySE526I	ACGT	1 cut(s)	960
Hsp92I	GRCGYC	2 cut(s)	33, 1147
Hsp92II	CATG	3 cut(s)	671, 689, 1171
KpnI	GGTACC	1 cut(s)	831
Kzo9I	GATC	3 cut(s)	16, 283, 844
LmnI	GCTCC	2 cut(s)	985, 1228
Lsp1109I	GCAGC	2 cut(s)	562, 958
LweI	GCATC	3 cut(s)	308, 511, 1038
MaeI	CTAG	6 cut(s)	47, 491, 515, 524, 1052, 1056
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	3 cut(s)	716, 884, 1261
MalI	GATC	3 cut(s)	18, 285, 846
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	3 cut(s)	16, 283, 844
MboII	GAAGA	7 cut(s)	507, 623, 803, 892, 1049, 1144, 1172
MflI	RGATCY	1 cut(s)	844
MluCI	AATT	9 cut(s)	57, 349, 445, 648, 672, 811, 903, 921, 1082
MlyI	GAGTC	2 cut(s)	277, 758
MmeI	TCCRAC	1 cut(s)	1000
MnlI	CCTC	7 cut(s)	62, 409, 472, 787, 948, 1038, 1177
MroXI	GAANNNNTTC	2 cut(s)	467, 681
MseI	TTAA	3 cut(s)	173, 429, 722
MspA1I	CMGCKG	1 cut(s)	1144
MspCI	CTTAAG	1 cut(s)	172
MspI	CCGG	3 cut(s)	386, 808, 848
MspR9I	CCNGG	1 cut(s)	1121
Mva1269I	GAATGC	1 cut(s)	1031
MvaI	CCWGG	1 cut(s)	1121
MwoI	GCNNNNNNNGC	6 cut(s)	168, 556, 767, 977, 1061, 1228
NdeII	GATC	3 cut(s)	16, 283, 844
NheI	GCTAGC	1 cut(s)	1051
NlaIII	CATG	3 cut(s)	671, 689, 1171
NlaIV	GGNNCC	3 cut(s)	229, 829, 981
NmuCI	GTSAC	2 cut(s)	716, 884
NspV	TTCGAA	1 cut(s)	443
PagI	TCATGA	1 cut(s)	685
PaqCI	CACCTGC	2 cut(s)	1169, 1213
PctI	GAATGC	1 cut(s)	1031
PdmI	GAANNNNTTC	2 cut(s)	467, 681
PfeI	GAWTC	2 cut(s)	511, 520
PkrI	GCNGC	4 cut(s)	552, 973, 1098, 1146
PleI	GAGTC	2 cut(s)	276, 757
PpsI	GAGTC	2 cut(s)	276, 757
PpuMI	RGGWCCY	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	1119
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	1119
PspN4I	GGNNCC	3 cut(s)	229, 829, 981
PspPI	GGNCC	2 cut(s)	383, 433
PspPPI	RGGWCCY	1 cut(s)	433
PsrI	GAACNNNNNNTAC	2 cut(s)	587, 619
PsuI	RGATCY	1 cut(s)	844
RsaI	GTAC	6 cut(s)	72, 178, 309, 333, 605, 829
RsaNI	GTAC	6 cut(s)	71, 177, 308, 332, 604, 828
SaqAI	TTAA	3 cut(s)	173, 429, 722
SatI	GCNGC	4 cut(s)	551, 972, 1097, 1145
Sau3AI	GATC	3 cut(s)	16, 283, 844
Sau96I	GGNCC	2 cut(s)	383, 433
SchI	GAGTC	2 cut(s)	277, 758
ScrFI	CCNGG	1 cut(s)	1121
SfaNI	GCATC	3 cut(s)	308, 511, 1038
SfcI	CTRYAG	2 cut(s)	190, 892
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	2 cut(s)	383, 433
SmlI	CTYRAG	2 cut(s)	172, 574
SmoI	CTYRAG	2 cut(s)	172, 574
Sse9I	AATT	9 cut(s)	57, 349, 445, 648, 672, 811, 903, 921, 1082
SsiI	CCGC	3 cut(s)	254, 1096, 1144
SspMI	CTAG	6 cut(s)	47, 491, 515, 524, 1052, 1056
StyD4I	CCNGG	1 cut(s)	1119
TaaI	ACNGT	3 cut(s)	608, 741, 896
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	4 cut(s)	286, 443, 593, 1035
TasI	AATT	9 cut(s)	57, 349, 445, 648, 672, 811, 903, 921, 1082
TatI	WGTACW	4 cut(s)	70, 176, 331, 603
TauI	GCSGC	2 cut(s)	1099, 1147
TfiI	GAWTC	2 cut(s)	511, 520
Tru1I	TTAA	3 cut(s)	173, 429, 722
Tru9I	TTAA	3 cut(s)	173, 429, 722
TscAI	CASTG	2 cut(s)	190, 613
TseFI	GTSAC	2 cut(s)	716, 884
TseI	GCWGC	2 cut(s)	550, 971
Tsp45I	GTSAC	2 cut(s)	716, 884
TspDTI	ATGAA	6 cut(s)	366, 651, 674, 702, 893, 1011
TspRI	CASTG	2 cut(s)	190, 613
Vha464I	CTTAAG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	383, 433
XapI	RAATTY	4 cut(s)	57, 349, 445, 811
XmiI	GTMKAC	1 cut(s)	852
XmnI	GAANNNNTTC	2 cut(s)	467, 681
XspI	CTAG	6 cut(s)	47, 491, 515, 524, 1052, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.