Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008330

Physical Location & Seq

Genomic Coordinates Reverse (-)

35786141 .. 35789215

Gene Structure 3075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47090.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTTCTTTCACTGTCCCTTGTCCCAAAGCTTGTTCTGCCTCAATTGTCCGACTTGGGTTGTCTCAGAGCTCACAGCCCCACAACCAGCAGCAGCACCTCCTCTCCTTCCACAACTGCCTCAACCGGTCTTCCTTGCCGTCTCTCCAAGCTTCTGCCCTTCAGAGCAAAAACAAGAAGCAATCTGGTGCTTGGAAAGTGCAGGCACTCAGTAAGGTCACTGCTGAGAAACCTGCAAATTCTGCACCCTTAAATAACACCAAGGCTGAAGATGAGTCTGCTGAAAAGGTTTCAAACAATATTCCAGATGCATCATCAATCTCTGCATTTATGGCCCAAGTATCAGACCTTGTCAAGTTAGTGGATTCTAGAGATATTGTGGAGCTGCAAATGAAGCAACTAGATCTAGAGCTTGTAATAAGAAAGAAGGAAGCCTTGGAGAAGCCAGCACCACAAGCTCCTGTTGCTTCAGCACCACCACCGTATCCTTACCCTATGCAATATGGTCCACCACCACCTGCCCCAGCAGCTGCTCCTGCGCCAGCAAGCCCAGCTCCAGCAGCATCAGCACCTGCATTACCTGCCCCTGCAAAGCCAAGTGCATCAGCTCACCCACCGCTGAAATGCCCCATGGCTGGAACCTTTTACCGTAGTCCTGCACCAGGCGAACCACCTTTTGTCAAGGCAAGAGATAAAGTGCAGAAGGGTCAAGTTATTTGCATCATTGAGGCCATGAAGTTGATGAACGAAATTGAGGCTGATCAATCTGGAACCATAGTGGAGGTAATTGCTGAGGATGCTAAACCAGTGAGCGTAGACACGCCTCTTTTCGTCATAGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

282

Amino Acids

29.61

Weight (kDa)

8.52

Isoelectric Point (pI)

67.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	207 - 279	1.5e-23	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15530
fragaria_vesca	FvH4_6g47090 FvH4_6g47090 FvH4_6g47090 FvH4_6g47090
malus_domestica	MD09G1064200.v1.1 MD10G1103400.v1.1 MD17G1057500.v1.1
prunus_persica	Prupe.3G256800_v2.0.a1
pyrus_communis	pycom111g05390 pycom17g05760
rosa_chinensis	RchiOBHm_Chr2g0166141
rosa_laevigata	RLG00000021589
rosa_multiflora	Rmu_co8361143.1_g000001 Rmu_sc0006218.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085170
rosa_rugosa	Rorug02G0520700 Rorug02G0520700
rosa_samantha	Rh2AG586700 Rh2BG598500 Rh2CG569200 Rh2DG608400
rosa_wichuraiana	Rw2G048910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	526, 580
Acc36I	ACCTGC	4 cut(s)	241, 526, 580, 589
AccI	GTMKAC	1 cut(s)	816
AciI	CCGC	1 cut(s)	617
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	3 cut(s)	146, 288, 453
AfiI	CCNNNNNNNGG	2 cut(s)	635, 662
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	661
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	9 cut(s)	32, 72, 152, 385, 412, 458, 530, 554, 608
AluI	AGCT	9 cut(s)	32, 72, 152, 385, 412, 458, 530, 554, 608
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	69, 147
AlwNI	CAGNNNCTG	2 cut(s)	530, 572
AoxI	GGCC	2 cut(s)	333, 729
ApeKI	GCWGC	6 cut(s)	91, 94, 385, 527, 530, 560
ApoI	RAATTY	1 cut(s)	238
AsiGI	ACCGGT	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	334, 506
AsuHPI	GGTGA	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	506
BaeI	ACNNNNGTAYC	2 cut(s)	467, 500
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	6 cut(s)	103, 106, 372, 517, 539, 572
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	69, 147
BfaI	CTAG	3 cut(s)	369, 401, 407
BfuAI	ACCTGC	4 cut(s)	241, 526, 580, 589
BfuI	GTATCC	1 cut(s)	495
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	6 cut(s)	92, 95, 386, 528, 531, 561
BlsI	GCNGC	6 cut(s)	93, 96, 387, 529, 532, 562
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	334, 506
BmiI	GGNNCC	2 cut(s)	640, 772
BmrFI	CCNGG	1 cut(s)	663
BmsI	GCATC	6 cut(s)	298, 320, 572, 611, 729, 787
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	792
BsaJI	CCNNGG	3 cut(s)	261, 435, 630
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	635, 662
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	806
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	3 cut(s)	261, 435, 630
BseGI	GGATG	1 cut(s)	802
BseLI	CCNNNNNNNGG	2 cut(s)	635, 662
BseMII	CTCAG	4 cut(s)	80, 216, 223, 783
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	6 cut(s)	103, 106, 372, 517, 539, 572
BseYI	CCCAGC	2 cut(s)	523, 550
BsgI	GTGCAG	4 cut(s)	221, 228, 642, 719
BshFI	GGCC	2 cut(s)	335, 731
BshTI	ACCGGT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	2, 9
BslI	CCNNNNNNNGG	2 cut(s)	635, 662
BsmAI	GTCTC	2 cut(s)	69, 147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	2 cut(s)	2, 9
BsnI	GGCC	2 cut(s)	335, 731
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	403, 760
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	2 cut(s)	335, 731
BspCNI	CTCAG	4 cut(s)	79, 217, 222, 784
BspLI	GGNNCC	2 cut(s)	640, 772
BspMI	ACCTGC	4 cut(s)	241, 526, 580, 589
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	806
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	261, 435, 630
BssMI	GATC	2 cut(s)	403, 760
BssT1I	CCWWGG	3 cut(s)	261, 435, 630
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	3 cut(s)	16, 483, 650
BstAPI	GCANNNNNTGC	2 cut(s)	242, 581
BstC8I	GCNNGC	4 cut(s)	204, 447, 543, 547
BstDEI	CTNAG	4 cut(s)	66, 209, 225, 792
BstDSI	CCRYGG	1 cut(s)	630
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	406, 763
BstMAI	GTCTC	2 cut(s)	69, 147
BstMBI	GATC	2 cut(s)	403, 760
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	661
BstV1I	GCAGC	6 cut(s)	103, 106, 372, 517, 539, 572
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	335, 731
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	802
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	3 cut(s)	12, 219, 813
BveI	ACCTGC	4 cut(s)	241, 526, 580, 589
Cac8I	GCNNGC	4 cut(s)	204, 447, 543, 547
CaiI	CAGNNNCTG	2 cut(s)	530, 572
CfoI	GCGC	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	334, 506
CspAI	ACCGGT	1 cut(s)	126
CviAII	CATG	2 cut(s)	631, 733
DdeI	CTNAG	4 cut(s)	66, 209, 225, 792
DpnI	GATC	2 cut(s)	405, 762
DpnII	GATC	2 cut(s)	403, 760
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	3 cut(s)	261, 435, 630
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	506
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	3 cut(s)	146, 288, 453
EcoICRI	GAGCTC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	3 cut(s)	261, 435, 630
EcoT22I	ATGCAT	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	3 cut(s)	261, 435, 630
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	634, 736
FaiI	YATR	7 cut(s)	332, 497, 504, 632, 734, 776, 836
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	2 cut(s)	2, 9
FatI	CATG	2 cut(s)	630, 732
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	6 cut(s)	92, 95, 386, 528, 531, 561
FokI	GGATG	1 cut(s)	809
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	6 cut(s)	92, 95, 386, 528, 531, 561
FspBI	CTAG	3 cut(s)	369, 401, 407
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	6 cut(s)	92, 95, 386, 528, 531, 561
GsaI	CCCAGC	2 cut(s)	527, 554
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	335, 731
HapII	CCGG	1 cut(s)	127
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	2 cut(s)	634, 736
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HindIII	AAGCTT	2 cut(s)	30, 150
HinfI	GANTC	2 cut(s)	275, 365
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	509, 817
Hpy188I	TCNGA	4 cut(s)	53, 69, 165, 346
Hpy188III	TCNNGA	4 cut(s)	305, 369, 407, 768
Hpy8I	GTNNAC	2 cut(s)	509, 817
HpyAV	CCTTC	4 cut(s)	118, 170, 421, 697
HpyCH4III	ACNGT	3 cut(s)	16, 483, 650
HpyF3I	CTNAG	4 cut(s)	66, 209, 225, 792
Hsp92II	CATG	2 cut(s)	634, 736
HspAI	GCGC	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	2 cut(s)	403, 760
LmnI	GCTCC	4 cut(s)	382, 463, 538, 559
Lsp1109I	GCAGC	6 cut(s)	103, 106, 372, 517, 539, 572
LweI	GCATC	6 cut(s)	298, 320, 572, 611, 729, 787
MaeI	CTAG	3 cut(s)	369, 401, 407
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	405, 762
MboI	GATC	2 cut(s)	403, 760
MboII	GAAGA	2 cut(s)	123, 281
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	4 cut(s)	45, 238, 750, 786
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	9 cut(s)	52, 110, 113, 131, 721, 748, 775, 787, 834
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	530, 619
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	663
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	663
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	2 cut(s)	403, 760
NlaIII	CATG	2 cut(s)	634, 736
NlaIV	GGNNCC	2 cut(s)	640, 772
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	313
PaqCI	CACCTGC	2 cut(s)	526, 580
PfeI	GAWTC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	350
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	6 cut(s)	93, 96, 387, 529, 532, 562
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	2 cut(s)	523, 550
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	640, 772
PspPI	GGNCC	2 cut(s)	334, 506
PstNI	CAGNNNCTG	2 cut(s)	530, 572
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	6 cut(s)	92, 95, 386, 528, 531, 561
Sau3AI	GATC	2 cut(s)	403, 760
Sau96I	GGNCC	2 cut(s)	334, 506
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	6 cut(s)	298, 320, 572, 611, 729, 787
SinI	GGWCC	1 cut(s)	506
Sse9I	AATT	4 cut(s)	45, 238, 750, 786
SsiI	CCGC	1 cut(s)	617
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	3 cut(s)	369, 401, 407
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	661
StyI	CCWWGG	3 cut(s)	261, 435, 630
TaaI	ACNGT	3 cut(s)	16, 483, 650
TasI	AATT	4 cut(s)	45, 238, 750, 786
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	3 cut(s)	19, 226, 813
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	6 cut(s)	91, 94, 385, 527, 530, 560
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	407, 749, 758
TspRI	CASTG	3 cut(s)	19, 226, 813
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	1 cut(s)	238
XbaI	TCTAGA	2 cut(s)	368, 406
XmiI	GTMKAC	1 cut(s)	816
XspI	CTAG	3 cut(s)	369, 401, 407
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.