Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008330

Physical Location & Seq

Genomic Coordinates Reverse (-)

24478866 .. 24481364

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G256800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTTCCTTCACAGTCCCGTGCCCCAAAGCATGCTCTCCCCCCATGGCTCGCCTTGGTTCTACTGCCCAAACTTCGCAGCCGCAGCAGCACCTGCTTTCCTTTCACAACTATCTCAATCGCTGTCCCATTCCCTCTCTGCAGATTTCTGGGCTTCAGAGCCCCATCAGGAAGCAATCTGCTGCCTGGAAGGTGCAGGCACAGCTTAGTGAGGTAACTGAGAAATCGTCGAATTCTGCACCCATAAATAACACCAAGTCTGAAGATGGATCACTGGAAGGGAAAGATGAGTCTACTGAAAAGCGTTCCAGCAATATTCCAGATGCATCATCAATATCAGCATTCATGGCTCAAGTATCAGACCTGGTTAAGTTAGTGGATTCAAGAGATATTGTGGAGCTCCAAATGAAGCAACTAGATTTAGAGCTCGTGATAAGAAAGAAAGAAGCCTTGGAGAAGCCAGCACCACAAGCTCCTTTTGCTCCACCACCAGCACATTATCCTTATGCCATGCTACCACCTCAACAAGCAGCAGCCCCAGCAACTGCTCCTGCTCCAGCAAGCCATCCAGCAGCAGCAGCACCTGCATTACCCGCCCCTGCAAAGGCTAGCACATCTTCTCACCCTCCACTGAAATGCCCCATGGCTGGAACCTTTTACCGTTGTCCTGCACCTGGTGAACCACCTTTTGTTAAGGTAGGGGATAAAGTTCAGAAAGGTCAAGTCATTTGCATCATTGAAGCCATGAAGTTGATGAATGAAATTGAGGCTGATCAATCTGGGACAGTAACTGAGATACTGGCCGAAGATGCAAAGCCAGTGAGTGTAGACACGCCTCTTTTTGTCATAGTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

286

Amino Acids

30.3

Weight (kDa)

6.53

Isoelectric Point (pI)

70.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15530
fragaria_vesca	FvH4_6g47090 FvH4_6g47090 FvH4_6g47090 FvH4_6g47090
malus_domestica	MD09G1064200.v1.1 MD10G1103400.v1.1 MD17G1057500.v1.1
prunus_persica	Prupe.3G256800_v2.0.a1
pyrus_communis	pycom111g05390 pycom17g05760
rosa_chinensis	RchiOBHm_Chr2g0166141
rosa_laevigata	RLG00000021589
rosa_multiflora	Rmu_co8361143.1_g000001 Rmu_sc0006218.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085170
rosa_rugosa	Rorug02G0520700 Rorug02G0520700
rosa_samantha	Rh2AG586700 Rh2BG598500 Rh2CG569200 Rh2DG608400
rosa_wichuraiana	Rw2G048910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	102, 592
Acc36I	ACCTGC	2 cut(s)	102, 592
AccI	GTMKAC	2 cut(s)	293, 828
AciI	CCGC	2 cut(s)	83, 594
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	801
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	2 cut(s)	140, 282
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	852
AfiI	CCNNNNNNNGG	3 cut(s)	604, 647, 674
AgsI	TTSAA	2 cut(s)	384, 740
AjnI	CCWGG	3 cut(s)	185, 363, 673
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	4 cut(s)	205, 400, 427, 473
AluI	AGCT	4 cut(s)	205, 400, 427, 473
Alw21I	GWGCWC	2 cut(s)	402, 429
AlwI	GGATC	1 cut(s)	277
AlwNI	CAGNNNCTG	4 cut(s)	94, 545, 584, 791
AoxI	GGCC	1 cut(s)	801
ApeKI	GCWGC	9 cut(s)	79, 85, 88, 182, 530, 533, 572, 575, 578
ApoI	RAATTY	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	614, 689
AsuNHI	GCTAGC	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	26
BanII	GRGCYC	3 cut(s)	164, 402, 429
BauI	CACGAG	1 cut(s)	428
Bbv12I	GWGCWC	2 cut(s)	402, 429
BbvI	GCAGC	9 cut(s)	91, 97, 100, 169, 542, 545, 584, 587, 590
BccI	CCATC	3 cut(s)	173, 260, 573
BciT130I	CCWGG	3 cut(s)	187, 365, 675
BclI	TGATCA	1 cut(s)	772
BfaI	CTAG	2 cut(s)	416, 609
BfmI	CTRYAG	1 cut(s)	140
BfuAI	ACCTGC	2 cut(s)	102, 592
Bme1390I	CCNGG	3 cut(s)	187, 365, 675
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	3 cut(s)	187, 365, 675
BmsI	GCATC	4 cut(s)	313, 335, 741, 799
BmtI	GCTAGC	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	45, 55, 450, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	604, 647, 674
Bse1I	ACTGG	3 cut(s)	279, 804, 818
BseBI	CCWGG	3 cut(s)	187, 365, 675
BseDI	CCNNGG	4 cut(s)	45, 55, 450, 642
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	3 cut(s)	604, 647, 674
BseMII	CTCAG	2 cut(s)	210, 783
BseNI	ACTGG	3 cut(s)	279, 804, 818
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	9 cut(s)	91, 97, 100, 169, 542, 545, 584, 587, 590
BseYI	CCCAGC	1 cut(s)	538
BsgI	GTGCAG	3 cut(s)	215, 222, 654
BshFI	GGCC	1 cut(s)	803
BsiHKAI	GWGCWC	2 cut(s)	402, 429
BslFI	GGGAC	3 cut(s)	2, 111, 796
BslI	CCNNNNNNNGG	3 cut(s)	604, 647, 674
BsmFI	GGGAC	3 cut(s)	2, 111, 796
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	803
Bsp1286I	GDGCHC	4 cut(s)	26, 164, 402, 429
Bsp143I	GATC	2 cut(s)	269, 772
Bsp19I	CCATGG	2 cut(s)	45, 642
BspACI	CCGC	2 cut(s)	83, 594
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	2 cut(s)	211, 784
BspLI	GGNNCC	1 cut(s)	652
BspMAI	CTGCAG	1 cut(s)	144
BspMI	ACCTGC	2 cut(s)	102, 592
BspOI	GCTAGC	1 cut(s)	612
BspPI	GGATC	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	279, 804, 818
BssECI	CCNNGG	4 cut(s)	45, 55, 450, 642
BssMI	GATC	2 cut(s)	269, 772
BssSI	CACGAG	1 cut(s)	428
BssT1I	CCWWGG	4 cut(s)	45, 55, 450, 642
Bst2BI	CACGAG	1 cut(s)	428
Bst2UI	CCWGG	3 cut(s)	187, 365, 675
Bst4CI	ACNGT	3 cut(s)	16, 662, 787
BstAPI	GCANNNNNTGC	2 cut(s)	94, 584
BstC8I	GCNNGC	6 cut(s)	34, 52, 198, 462, 562, 610
BstDEI	CTNAG	3 cut(s)	206, 219, 792
BstDSI	CCRYGG	2 cut(s)	45, 642
BstF5I	GGATG	1 cut(s)	565
BstKTI	GATC	2 cut(s)	272, 775
BstMBI	GATC	2 cut(s)	269, 772
BstNI	CCWGG	3 cut(s)	187, 365, 675
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	3 cut(s)	185, 363, 673
BstSFI	CTRYAG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	9 cut(s)	91, 97, 100, 169, 542, 545, 584, 587, 590
BsuRI	GGCC	1 cut(s)	803
BtgI	CCRYGG	2 cut(s)	45, 642
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	3 cut(s)	272, 629, 825
BveI	ACCTGC	2 cut(s)	102, 592
Cac8I	GCNNGC	6 cut(s)	34, 52, 198, 462, 562, 610
CaiI	CAGNNNCTG	4 cut(s)	94, 545, 584, 791
CsiI	ACCWGGT	2 cut(s)	363, 673
Csp6I	GTAC	1 cut(s)	851
CviAII	CATG	7 cut(s)	33, 46, 346, 511, 643, 745, 855
CviQI	GTAC	1 cut(s)	851
DdeI	CTNAG	3 cut(s)	206, 219, 792
DpnI	GATC	2 cut(s)	271, 774
DpnII	GATC	2 cut(s)	269, 772
DraIII	CACNNNGTG	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	801
Ecl136II	GAGCTC	2 cut(s)	400, 427
Eco130I	CCWWGG	4 cut(s)	45, 55, 450, 642
Eco24I	GRGCYC	3 cut(s)	164, 402, 429
Eco53kI	GAGCTC	2 cut(s)	400, 427
Eco57I	CTGAAG	2 cut(s)	140, 282
EcoICRI	GAGCTC	2 cut(s)	400, 427
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	3 cut(s)	185, 363, 673
EcoT14I	CCWWGG	4 cut(s)	45, 55, 450, 642
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	3 cut(s)	164, 402, 429
ErhI	CCWWGG	4 cut(s)	45, 55, 450, 642
FaeI	CATG	7 cut(s)	36, 49, 349, 514, 646, 748, 858
FaqI	GGGAC	3 cut(s)	2, 111, 796
FatI	CATG	7 cut(s)	32, 45, 345, 510, 642, 744, 854
FauI	CCCGC	1 cut(s)	601
FbaI	TGATCA	1 cut(s)	772
FblI	GTMKAC	2 cut(s)	293, 828
FokI	GGATG	1 cut(s)	552
FriOI	GRGCYC	3 cut(s)	164, 402, 429
FspBI	CTAG	2 cut(s)	416, 609
GsaI	CCCAGC	1 cut(s)	542
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	803
Hin1II	CATG	7 cut(s)	36, 49, 349, 514, 646, 748, 858
HinfI	GANTC	2 cut(s)	290, 380
HphI	GGTGA	2 cut(s)	614, 689
Hpy166II	GTNNAC	3 cut(s)	294, 680, 829
Hpy188I	TCNGA	4 cut(s)	159, 262, 361, 714
Hpy188III	TCNNGA	4 cut(s)	169, 320, 384, 430
Hpy8I	GTNNAC	3 cut(s)	294, 680, 829
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	3 cut(s)	19, 184, 272
HpyCH4III	ACNGT	3 cut(s)	16, 662, 787
HpyCH4V	TGCA	9 cut(s)	142, 196, 239, 326, 587, 602, 671, 732, 812
HpyF3I	CTNAG	3 cut(s)	206, 219, 792
Hsp92II	CATG	7 cut(s)	36, 49, 349, 514, 646, 748, 858
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	2 cut(s)	269, 772
LmnI	GCTCC	6 cut(s)	397, 405, 478, 487, 553, 559
Lsp1109I	GCAGC	9 cut(s)	91, 97, 100, 169, 542, 545, 584, 587, 590
LweI	GCATC	4 cut(s)	313, 335, 741, 799
MabI	ACCWGGT	2 cut(s)	363, 673
MaeI	CTAG	2 cut(s)	416, 609
MaeIII	GTNAC	2 cut(s)	214, 787
MalI	GATC	2 cut(s)	271, 774
MboI	GATC	2 cut(s)	269, 772
MboII	GAAGA	3 cut(s)	275, 609, 818
MhlI	GDGCHC	4 cut(s)	26, 164, 402, 429
MluCI	AATT	2 cut(s)	232, 762
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	6 cut(s)	145, 205, 531, 636, 760, 846
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	2 cut(s)	369, 693
MslI	CAYNNNNRTG	1 cut(s)	634
MspR9I	CCNGG	3 cut(s)	187, 365, 675
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	3 cut(s)	187, 365, 675
NcoI	CCATGG	2 cut(s)	45, 642
NdeII	GATC	2 cut(s)	269, 772
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	7 cut(s)	36, 49, 349, 514, 646, 748, 858
NlaIV	GGNNCC	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PaqCI	CACCTGC	2 cut(s)	102, 592
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	380
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp124BI	GAGCTC	2 cut(s)	402, 429
Psp6I	CCWGG	3 cut(s)	185, 363, 673
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	3 cut(s)	185, 363, 673
PspN4I	GGNNCC	1 cut(s)	652
PstI	CTGCAG	1 cut(s)	144
PstNI	CAGNNNCTG	4 cut(s)	94, 545, 584, 791
RsaI	GTAC	1 cut(s)	852
RsaNI	GTAC	1 cut(s)	851
RseI	CAYNNNNRTG	1 cut(s)	634
SacI	GAGCTC	2 cut(s)	402, 429
SaqAI	TTAA	2 cut(s)	369, 693
Sau3AI	GATC	2 cut(s)	269, 772
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	3 cut(s)	187, 365, 675
SduI	GDGCHC	4 cut(s)	26, 164, 402, 429
SexAI	ACCWGGT	2 cut(s)	363, 673
SfaNI	GCATC	4 cut(s)	313, 335, 741, 799
SfcI	CTRYAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	232, 762
SsiI	CCGC	2 cut(s)	83, 594
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	2 cut(s)	416, 609
SstI	GAGCTC	2 cut(s)	402, 429
StyD4I	CCNGG	3 cut(s)	185, 363, 673
StyI	CCWWGG	4 cut(s)	45, 55, 450, 642
TaaI	ACNGT	3 cut(s)	16, 662, 787
TaqI	TCGA	1 cut(s)	230
TasI	AATT	2 cut(s)	232, 762
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	369, 693
Tru9I	TTAA	2 cut(s)	369, 693
TscAI	CASTG	3 cut(s)	279, 636, 825
TseI	GCWGC	9 cut(s)	79, 85, 88, 182, 530, 533, 572, 575, 578
TspDTI	ATGAA	5 cut(s)	334, 422, 761, 770, 774
TspRI	CASTG	3 cut(s)	279, 636, 825
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	1 cut(s)	36
XmiI	GTMKAC	2 cut(s)	293, 828
XspI	CTAG	2 cut(s)	416, 609
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.