Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008330

Physical Location & Seq

Genomic Coordinates Reverse (-)

84179665 .. 84182313

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG608400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTTCTTTCACTGCCCCTTGTCCCAAACCTTGTTCTGCCCCAATTGCTCGACTTGCTGCCTCACAGAGCTCACAGCCCCAGCAGCAGCTCCTTTCCTTCCACAACTGTCTCAATCGGTGTTCCTTGCTCCAAGCTTCTGGGCTCCAGAGCAACATCAAGAAGCAATCTGGTGCTTGGAAGGTGCAGGCACTCAGTAAGTTTCTTTCTTTTTTTGCTCCAATTTTTGAATTGAAGGTCACTACTGAGAAACCTTCAAATTTTGCACCCATAAATAACACCAAGTCTGAAGATGAGTCTGCTGAAAAGGTTTCGAACAATATTCCAGATGCATCATCAATCTCAGCATTCATGGCCCAAGTATCAGACCTTGTCAAGTTAGTGGATTCAAGAGATATTGTGGAGCTGCAAATGAAGCAACTAGATCTAGAGCTCGTAATAAGAAAGAAGGAAGCCTTGGAGAAGCCAGCACCACAAGCTCCTGTTGCTTCTGCACCACCACCGTATCCTTATCCTATGCAATATGGTCCACCACCACCAGCCCCAGCAGCTGCTCCTGCTCCAGCAAGCCCAGCTCCAGCAGCATCAACACCTGCATTACCTGCCCCTGCAAAGCCAGCTGCATCAGCTCACCCACCGCTGAAATGCCCCATGGCTGGAACCTTTTACCGTTGTCCTGCACCTGGCGAACCACCTTTTGTCAAGGTAGGAGATAAAGTGCAGAAAGGTCAAGTCATTTGCATCATTGAGGCCATGAAGTTGATGAATGAAATTGAGGCTGATCAATCTGGAACCATAGTTGAGGTACTTGCTGAGGATACAAAACCAGTGAGCGTAGACACGCCTCTTTTTGTCATAGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

288

Amino Acids

30.53

Weight (kDa)

7.52

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	214 - 286	3.9e-23	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15530
fragaria_vesca	FvH4_6g47090 FvH4_6g47090 FvH4_6g47090 FvH4_6g47090
malus_domestica	MD09G1064200.v1.1 MD10G1103400.v1.1 MD17G1057500.v1.1
prunus_persica	Prupe.3G256800_v2.0.a1
pyrus_communis	pycom111g05390 pycom17g05760
rosa_chinensis	RchiOBHm_Chr2g0166141
rosa_laevigata	RLG00000021589
rosa_multiflora	Rmu_co8361143.1_g000001 Rmu_sc0006218.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085170
rosa_rugosa	Rorug02G0520700 Rorug02G0520700
rosa_samantha	Rh2AG586700 Rh2BG598500 Rh2CG569200 Rh2DG608400
rosa_wichuraiana	Rw2G048910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	601
Acc36I	ACCTGC	2 cut(s)	601, 610
AccI	GTMKAC	1 cut(s)	837
AciI	CCGC	1 cut(s)	638
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	2 cut(s)	656, 683
AgsI	TTSAA	4 cut(s)	230, 235, 258, 390
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
Alw21I	GWGCWC	2 cut(s)	74, 435
Alw26I	GTCTC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	354, 750
ApeKI	GCWGC	8 cut(s)	59, 85, 88, 406, 548, 551, 581, 620
ApoI	RAATTY	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	355, 527
AsuHPI	GGTGA	1 cut(s)	623
AsuII	TTCGAA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	527
BaeI	ACNNNNGTAYC	2 cut(s)	488, 521
BanII	GRGCYC	3 cut(s)	74, 147, 435
Bbv12I	GWGCWC	2 cut(s)	74, 435
BbvCI	CCTCAGC	1 cut(s)	813
BbvI	GCAGC	8 cut(s)	46, 97, 100, 393, 538, 560, 593, 607
BciT130I	CCWGG	1 cut(s)	684
BciVI	GTATCC	2 cut(s)	516, 811
BclI	TGATCA	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	422, 428
BfuAI	ACCTGC	2 cut(s)	601, 610
BfuI	GTATCC	2 cut(s)	516, 811
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	8 cut(s)	60, 86, 89, 407, 549, 552, 582, 621
BlsI	GCNGC	8 cut(s)	61, 87, 90, 408, 550, 553, 583, 622
Bme1390I	CCNGG	1 cut(s)	684
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	355, 527
BmiI	GGNNCC	3 cut(s)	146, 661, 793
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	5 cut(s)	319, 341, 593, 632, 750
BpmI	CTGGAG	3 cut(s)	131, 546, 561
Bpu10I	CCTNAGC	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	456, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 683
Bse1I	ACTGG	1 cut(s)	827
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	456, 651
BseLI	CCNNNNNNNGG	2 cut(s)	656, 683
BseMII	CTCAG	4 cut(s)	208, 237, 357, 804
BseNI	ACTGG	1 cut(s)	827
BseXI	GCAGC	8 cut(s)	46, 97, 100, 393, 538, 560, 593, 607
BseYI	CCCAGC	3 cut(s)	81, 544, 571
BsgI	GTGCAG	4 cut(s)	206, 477, 663, 740
BshFI	GGCC	2 cut(s)	356, 752
BsiHKAI	GWGCWC	2 cut(s)	74, 435
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	656, 683
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	356, 752
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	74, 147, 435
Bsp143I	GATC	2 cut(s)	424, 781
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	2 cut(s)	356, 752
BspCNI	CTCAG	4 cut(s)	207, 238, 356, 805
BspLI	GGNNCC	3 cut(s)	146, 661, 793
BspMI	ACCTGC	2 cut(s)	601, 610
BspT104I	TTCGAA	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	827
BssECI	CCNNGG	2 cut(s)	456, 651
BssMI	GATC	2 cut(s)	424, 781
BssT1I	CCWWGG	2 cut(s)	456, 651
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	3 cut(s)	110, 504, 671
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	189, 468, 568, 618
BstDEI	CTNAG	4 cut(s)	194, 246, 343, 813
BstDSI	CCRYGG	1 cut(s)	651
BstKTI	GATC	2 cut(s)	427, 784
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	424, 781
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	1 cut(s)	682
BstV1I	GCAGC	8 cut(s)	46, 97, 100, 393, 538, 560, 593, 607
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	424
BsuI	GTATCC	2 cut(s)	516, 811
BsuRI	GGCC	2 cut(s)	356, 752
BtgI	CCRYGG	1 cut(s)	651
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 834
BveI	ACCTGC	2 cut(s)	601, 610
Cac8I	GCNNGC	4 cut(s)	189, 468, 568, 618
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	2 cut(s)	355, 527
Csp6I	GTAC	1 cut(s)	806
CviAII	CATG	3 cut(s)	352, 652, 754
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	4 cut(s)	194, 246, 343, 813
DpnI	GATC	2 cut(s)	426, 783
DpnII	GATC	2 cut(s)	424, 781
Ecl136II	GAGCTC	2 cut(s)	72, 433
Eco130I	CCWWGG	2 cut(s)	456, 651
Eco24I	GRGCYC	3 cut(s)	74, 147, 435
Eco47I	GGWCC	1 cut(s)	527
Eco53kI	GAGCTC	2 cut(s)	72, 433
Eco57I	CTGAAG	1 cut(s)	309
EcoICRI	GAGCTC	2 cut(s)	72, 433
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	456, 651
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	3 cut(s)	74, 147, 435
ErhI	CCWWGG	2 cut(s)	456, 651
FaeI	CATG	3 cut(s)	355, 655, 757
FaiI	YATR	8 cut(s)	272, 353, 518, 525, 653, 755, 797, 857
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	3 cut(s)	351, 651, 753
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	8 cut(s)	60, 86, 89, 407, 549, 552, 582, 621
FriOI	GRGCYC	3 cut(s)	74, 147, 435
Fsp4HI	GCNGC	8 cut(s)	60, 86, 89, 407, 549, 552, 582, 621
FspBI	CTAG	2 cut(s)	422, 428
GluI	GCNGC	8 cut(s)	60, 86, 89, 407, 549, 552, 582, 621
GsaI	CCCAGC	3 cut(s)	85, 548, 575
GsuI	CTGGAG	3 cut(s)	131, 546, 561
HaeIII	GGCC	2 cut(s)	356, 752
Hin1II	CATG	3 cut(s)	355, 655, 757
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	296, 386
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	530, 838
Hpy188I	TCNGA	2 cut(s)	289, 367
Hpy188III	TCNNGA	6 cut(s)	148, 160, 326, 390, 428, 789
Hpy8I	GTNNAC	2 cut(s)	530, 838
HpyAV	CCTTC	5 cut(s)	109, 175, 229, 264, 442
HpyCH4III	ACNGT	3 cut(s)	110, 504, 671
HpyF3I	CTNAG	4 cut(s)	194, 246, 343, 813
Hsp92II	CATG	3 cut(s)	355, 655, 757
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	2 cut(s)	424, 781
LmnI	GCTCC	9 cut(s)	96, 135, 150, 223, 403, 484, 559, 565, 580
Lsp1109I	GCAGC	8 cut(s)	46, 97, 100, 393, 538, 560, 593, 607
LweI	GCATC	5 cut(s)	319, 341, 593, 632, 750
MaeI	CTAG	2 cut(s)	422, 428
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	426, 783
MboI	GATC	2 cut(s)	424, 781
MboII	GAAGA	1 cut(s)	302
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	3 cut(s)	74, 147, 435
MluCI	AATT	5 cut(s)	45, 222, 230, 259, 771
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	6 cut(s)	73, 742, 769, 796, 808, 855
Mph1103I	ATGCAT	1 cut(s)	334
MspA1I	CMGCKG	3 cut(s)	551, 620, 640
MspR9I	CCNGG	1 cut(s)	684
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	684
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	2 cut(s)	424, 781
NlaIII	CATG	3 cut(s)	355, 655, 757
NlaIV	GGNNCC	3 cut(s)	146, 661, 793
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	601
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	386
PflFI	GACNNNGTC	1 cut(s)	371
PkrI	GCNGC	8 cut(s)	61, 87, 90, 408, 550, 553, 583, 622
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	2 cut(s)	74, 435
Psp6I	CCWGG	1 cut(s)	682
PspFI	CCCAGC	3 cut(s)	81, 544, 571
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	146, 661, 793
PspPI	GGNCC	2 cut(s)	355, 527
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	371
PvuII	CAGCTG	2 cut(s)	551, 620
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
SacI	GAGCTC	2 cut(s)	74, 435
SatI	GCNGC	8 cut(s)	60, 86, 89, 407, 549, 552, 582, 621
Sau3AI	GATC	2 cut(s)	424, 781
Sau96I	GGNCC	2 cut(s)	355, 527
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	3 cut(s)	74, 147, 435
SfaNI	GCATC	5 cut(s)	319, 341, 593, 632, 750
SfuI	TTCGAA	1 cut(s)	314
SinI	GGWCC	1 cut(s)	527
Sse9I	AATT	5 cut(s)	45, 222, 230, 259, 771
SsiI	CCGC	1 cut(s)	638
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	422, 428
SstI	GAGCTC	2 cut(s)	74, 435
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	2 cut(s)	456, 651
TaaI	ACNGT	3 cut(s)	110, 504, 671
TaqI	TCGA	2 cut(s)	52, 314
TasI	AATT	5 cut(s)	45, 222, 230, 259, 771
TfiI	GAWTC	1 cut(s)	386
TscAI	CASTG	2 cut(s)	19, 834
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	8 cut(s)	59, 85, 88, 406, 548, 551, 581, 620
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	5 cut(s)	340, 428, 770, 779, 783
TspRI	CASTG	2 cut(s)	19, 834
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	259
XbaI	TCTAGA	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	2 cut(s)	422, 428
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.