Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008330

Physical Location & Seq

Genomic Coordinates Reverse (-)

76416704 .. 76419701

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTGGTACAAGACGCAAGTCTTACTCAGATCCCATCCCCTAAAACACTTCGCACCCATCTCTCCTCATTCTTGTGTTTACCTCCAAAATGGCTTCTTTCACTGCCCCTTCCCCAAACCTTGTTCTGCCCCAATTGTTCGGCTTGCTGCGTCACAGAGCTCACAGCCCCAGCAGCAACTCCTTTCCTTCCACAACTGTCTCAATCGGTCTTCCTTGCTCCAAGCTTCTGGGCTCCAGAGCAACATCAAGAAGCAATCTGGTGCTTGGAAGGTGCAGGCACTCAGTAAGGTCACTACTGAGAAACCTTCAAATTCTGCACCCATAAATAACACCAAGTCTGAAGATGAGTCTGCTGAAAAGGTTTCGAACAATATTCCAGATTCATCATCAATCTCAGCATTCATGGCCCAAGTATCAGACCTTATCAAGTTAGTGGATTCAAGAGATATTGTGGAGCTGCAAATGAAGCAACTAGATCTAGAGCTCGTAATAAGAAAGAAGGAAGCCTTGGAGAAGCCAGCACCACAAGCTCCAGTTGCTTCGGCACCACCACCTTATCCTTATCCTATGCAATATGGTCCACCACCACCTGCCCCAGCAGCTGCTCCTGCTCCAGCAAGCCCAGCTCCAGCAGCATCAGCACCTGCATTACCTGCCCCTGCAAAGCCAGCTGCATCGGCTCACCCACCGCTGAAATGCCCCATGGCTGGAACCTTTTACCGTTGTCCTGCACCTGGCGAACCACCTTTTGTGAAGGCAAGAGATAAAGTGCAGAAAGGTCAAGTCATTTGCATCATTGAGGCCATGAAGTTGATGAATGAAATTGAGGCTGATCAATCTGGAACCATAGTTGAGGTACTTGCTGAGGATACAAAACCAGTGAGCGTAGACACGCCTCTTTTTGTCATAGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

305

Amino Acids

32.72

Weight (kDa)

8.75

Isoelectric Point (pI)

65.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	231 - 303	1.1e-20	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15530
fragaria_vesca	FvH4_6g47090 FvH4_6g47090 FvH4_6g47090 FvH4_6g47090
malus_domestica	MD09G1064200.v1.1 MD10G1103400.v1.1 MD17G1057500.v1.1
prunus_persica	Prupe.3G256800_v2.0.a1
pyrus_communis	pycom111g05390 pycom17g05760
rosa_chinensis	RchiOBHm_Chr2g0166141
rosa_laevigata	RLG00000021589
rosa_multiflora	Rmu_co8361143.1_g000001 Rmu_sc0006218.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085170
rosa_rugosa	Rorug02G0520700 Rorug02G0520700
rosa_samantha	Rh2AG586700 Rh2BG598500 Rh2CG569200 Rh2DG608400
rosa_wichuraiana	Rw2G048910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	598, 652
Acc36I	ACCTGC	3 cut(s)	598, 652, 661
AccB1I	GGYRCC	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	888
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	8, 858
AfiI	CCNNNNNNNGG	2 cut(s)	707, 734
AgsI	TTSAA	2 cut(s)	309, 441
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	8 cut(s)	159, 224, 457, 484, 530, 602, 626, 671
AluI	AGCT	8 cut(s)	159, 224, 457, 484, 530, 602, 626, 671
Alw21I	GWGCWC	2 cut(s)	161, 486
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	2 cut(s)	602, 644
AoxI	GGCC	2 cut(s)	405, 801
ApeKI	GCWGC	7 cut(s)	146, 172, 457, 599, 602, 632, 671
ApoI	RAATTY	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	406, 578
AsuHPI	GGTGA	1 cut(s)	674
AsuII	TTCGAA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	544
BanII	GRGCYC	3 cut(s)	161, 234, 486
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	161, 486
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	7 cut(s)	133, 184, 444, 589, 611, 644, 658
BccI	CCATC	2 cut(s)	42, 65
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	862
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	473, 479
BfuAI	ACCTGC	3 cut(s)	598, 652, 661
BfuI	GTATCC	1 cut(s)	862
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	7 cut(s)	147, 173, 458, 600, 603, 633, 672
BlsI	GCNGC	7 cut(s)	148, 174, 459, 601, 604, 634, 673
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	406, 578
BmiI	GGNNCC	4 cut(s)	233, 546, 712, 844
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	3 cut(s)	644, 683, 801
BoxI	GACNNNNGTC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	4 cut(s)	218, 516, 597, 612
Bpu10I	CCTNAGC	1 cut(s)	864
Bpu14I	TTCGAA	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	507, 702
Bsc4I	CCNNNNNNNGG	2 cut(s)	707, 734
Bse1I	ACTGG	2 cut(s)	533, 878
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	507, 702
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	707, 734
BseMII	CTCAG	5 cut(s)	40, 288, 295, 408, 855
BseNI	ACTGG	2 cut(s)	533, 878
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	7 cut(s)	133, 184, 444, 589, 611, 644, 658
BseYI	CCCAGC	3 cut(s)	168, 595, 622
BsgI	GTGCAG	4 cut(s)	293, 300, 714, 791
BshFI	GGCC	2 cut(s)	407, 803
BshNI	GGYRCC	1 cut(s)	544
BsiHKAI	GWGCWC	2 cut(s)	161, 486
BslI	CCNNNNNNNGG	2 cut(s)	707, 734
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	407, 803
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	161, 234, 486
Bsp143I	GATC	3 cut(s)	29, 475, 832
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	2 cut(s)	407, 803
BspCNI	CTCAG	5 cut(s)	39, 289, 294, 407, 856
BspLI	GGNNCC	4 cut(s)	233, 546, 712, 844
BspMI	ACCTGC	3 cut(s)	598, 652, 661
BspPI	GGATC	1 cut(s)	24
BspT104I	TTCGAA	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	533, 878
BssECI	CCNNGG	2 cut(s)	507, 702
BssMI	GATC	3 cut(s)	29, 475, 832
BssT1I	CCWWGG	2 cut(s)	507, 702
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	197, 722
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	5 cut(s)	144, 276, 519, 619, 669
BstDEI	CTNAG	5 cut(s)	26, 281, 297, 394, 864
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	32, 478, 835
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	29, 475, 832
BstNI	CCWGG	1 cut(s)	735
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	733
BstV1I	GCAGC	7 cut(s)	133, 184, 444, 589, 611, 644, 658
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	29, 475
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	2 cut(s)	29, 475
BsuI	GTATCC	1 cut(s)	862
BsuRI	GGCC	2 cut(s)	407, 803
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	100, 885
BveI	ACCTGC	3 cut(s)	598, 652, 661
Cac8I	GCNNGC	5 cut(s)	144, 276, 519, 619, 669
CaiI	CAGNNNCTG	2 cut(s)	602, 644
Cfr13I	GGNCC	2 cut(s)	406, 578
CseI	GACGC	2 cut(s)	22, 138
Csp6I	GTAC	2 cut(s)	7, 857
CviAII	CATG	3 cut(s)	403, 703, 805
CviQI	GTAC	2 cut(s)	7, 857
DdeI	CTNAG	5 cut(s)	26, 281, 297, 394, 864
DpnI	GATC	3 cut(s)	31, 477, 834
DpnII	GATC	3 cut(s)	29, 475, 832
Ecl136II	GAGCTC	2 cut(s)	159, 484
Eco130I	CCWWGG	2 cut(s)	507, 702
Eco24I	GRGCYC	3 cut(s)	161, 234, 486
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	2 cut(s)	159, 484
Eco57I	CTGAAG	1 cut(s)	360
EcoICRI	GAGCTC	2 cut(s)	159, 484
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	507, 702
EcoT38I	GRGCYC	3 cut(s)	161, 234, 486
ErhI	CCWWGG	2 cut(s)	507, 702
FaeI	CATG	3 cut(s)	406, 706, 808
FaiI	YATR	8 cut(s)	323, 404, 569, 576, 704, 806, 848, 908
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	3 cut(s)	402, 702, 804
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	7 cut(s)	147, 173, 458, 600, 603, 633, 672
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	3 cut(s)	161, 234, 486
Fsp4HI	GCNGC	7 cut(s)	147, 173, 458, 600, 603, 633, 672
FspBI	CTAG	2 cut(s)	473, 479
GluI	GCNGC	7 cut(s)	147, 173, 458, 600, 603, 633, 672
GsaI	CCCAGC	3 cut(s)	172, 599, 626
GsuI	CTGGAG	4 cut(s)	218, 516, 597, 612
HaeIII	GGCC	2 cut(s)	407, 803
HgaI	GACGC	2 cut(s)	22, 138
Hin1II	CATG	3 cut(s)	406, 706, 808
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	3 cut(s)	347, 380, 437
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	3 cut(s)	79, 581, 889
Hpy188I	TCNGA	3 cut(s)	29, 340, 418
Hpy188III	TCNNGA	6 cut(s)	235, 247, 377, 441, 479, 840
Hpy8I	GTNNAC	3 cut(s)	79, 581, 889
HpyAV	CCTTC	6 cut(s)	118, 196, 262, 315, 493, 748
HpyCH4III	ACNGT	2 cut(s)	197, 722
HpyF3I	CTNAG	5 cut(s)	26, 281, 297, 394, 864
Hsp92II	CATG	3 cut(s)	406, 706, 808
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	3 cut(s)	29, 475, 832
LmnI	GCTCC	7 cut(s)	222, 237, 454, 535, 610, 616, 631
Lsp1109I	GCAGC	7 cut(s)	133, 184, 444, 589, 611, 644, 658
LweI	GCATC	3 cut(s)	644, 683, 801
MaeI	CTAG	2 cut(s)	473, 479
MaeIII	GTNAC	2 cut(s)	150, 289
MalI	GATC	3 cut(s)	31, 477, 834
MboI	GATC	3 cut(s)	29, 475, 832
MboII	GAAGA	2 cut(s)	201, 353
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	2 cut(s)	29, 475
MhlI	GDGCHC	3 cut(s)	161, 234, 486
MluCI	AATT	3 cut(s)	132, 310, 822
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	7 cut(s)	75, 92, 793, 820, 847, 859, 906
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	3 cut(s)	602, 671, 691
MspR9I	CCNGG	1 cut(s)	735
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	735
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	29, 475, 832
NlaIII	CATG	3 cut(s)	406, 706, 808
NlaIV	GGNNCC	4 cut(s)	233, 546, 712, 844
NmuCI	GTSAC	2 cut(s)	150, 289
NspV	TTCGAA	1 cut(s)	365
PaqCI	CACCTGC	2 cut(s)	598, 652
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	380, 437
PkrI	GCNGC	7 cut(s)	148, 174, 459, 601, 604, 634, 673
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PshAI	GACNNNNGTC	1 cut(s)	17
Psp124BI	GAGCTC	2 cut(s)	161, 486
Psp6I	CCWGG	1 cut(s)	733
PspFI	CCCAGC	3 cut(s)	168, 595, 622
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	4 cut(s)	233, 546, 712, 844
PspPI	GGNCC	2 cut(s)	406, 578
PstNI	CAGNNNCTG	2 cut(s)	602, 644
PsuI	RGATCY	2 cut(s)	29, 475
PvuII	CAGCTG	2 cut(s)	602, 671
RsaI	GTAC	2 cut(s)	8, 858
RsaNI	GTAC	2 cut(s)	7, 857
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	2 cut(s)	161, 486
SatI	GCNGC	7 cut(s)	147, 173, 458, 600, 603, 633, 672
Sau3AI	GATC	3 cut(s)	29, 475, 832
Sau96I	GGNCC	2 cut(s)	406, 578
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	3 cut(s)	161, 234, 486
SfaNI	GCATC	3 cut(s)	644, 683, 801
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	132, 310, 822
SsiI	CCGC	1 cut(s)	689
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	473, 479
SstI	GAGCTC	2 cut(s)	161, 486
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	507, 702
TaaI	ACNGT	2 cut(s)	197, 722
TaqI	TCGA	1 cut(s)	365
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	132, 310, 822
TfiI	GAWTC	2 cut(s)	380, 437
TscAI	CASTG	2 cut(s)	107, 885
TseFI	GTSAC	2 cut(s)	150, 289
TseI	GCWGC	7 cut(s)	146, 172, 457, 599, 602, 632, 671
Tsp45I	GTSAC	2 cut(s)	150, 289
TspDTI	ATGAA	6 cut(s)	372, 391, 479, 821, 830, 834
TspRI	CASTG	2 cut(s)	107, 885
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	310
XbaI	TCTAGA	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	888
XspI	CTAG	2 cut(s)	473, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.