Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8361143.1

Orthogroup ID

OG0008330

Physical Location & Seq

Genomic Coordinates Reverse (-)

141 .. 986

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8361143.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgataagcaacatcaagaagcaatctggtgcttggaaggtgcaggcactcagtaaggtcactactgagaaaccttcaaattctgcacccataaataacaccaagtctgaagatgagtctgctgaaaaggtttcgaacaatattccagattcatcatcaatctcagcattcatggcccaagtatcagaccttatcaagttagtggattcaagagatattgtggagctgcaaatgaagcaactagatctagagctcgtaataagaaagaaggaagccttggagaagccagcaccacaagctccagttgcttcggcaccaccaccttatccttatcctatgcaatatggtccaccaccaccggcccctgcagctgctcctgctccagcaagcccagctccagcagcatcagcacctgcattacctgcccctgcaaagccagctgcatcagctcacccaccgctgaaatgccccatggctggaaccttttaccgttgtcctgcacctggcgaaccaccttttgtcaaggcaagtcttatctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

180

Amino Acids

18.8

Weight (kDa)

8.83

Isoelectric Point (pI)

66.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15530
fragaria_vesca	FvH4_6g47090 FvH4_6g47090 FvH4_6g47090 FvH4_6g47090
malus_domestica	MD09G1064200.v1.1 MD10G1103400.v1.1 MD17G1057500.v1.1
prunus_persica	Prupe.3G256800_v2.0.a1
pyrus_communis	pycom111g05390 pycom17g05760
rosa_chinensis	RchiOBHm_Chr2g0166141
rosa_laevigata	RLG00000021589
rosa_multiflora	Rmu_co8361143.1_g000001 Rmu_sc0006218.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085170
rosa_rugosa	Rorug02G0520700 Rorug02G0520700
rosa_samantha	Rh2AG586700 Rh2BG598500 Rh2CG569200 Rh2DG608400
rosa_wichuraiana	Rw2G048910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
Acc36I	ACCTGC	2 cut(s)	421, 430
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	476, 503
AgsI	TTSAA	2 cut(s)	78, 210
AjnI	CCWGG	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	7 cut(s)	226, 253, 299, 371, 395, 440, 449
AluI	AGCT	7 cut(s)	226, 253, 299, 371, 395, 440, 449
Alw21I	GWGCWC	1 cut(s)	255
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	174, 360
ApeKI	GCWGC	5 cut(s)	226, 368, 371, 401, 440
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	175, 347, 361
AsuHPI	GGTGA	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	5 cut(s)	213, 358, 380, 413, 427
BciT130I	CCWGG	1 cut(s)	504
BfaI	CTAG	2 cut(s)	242, 248
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	2 cut(s)	421, 430
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	5 cut(s)	227, 369, 372, 402, 441
BlsI	GCNGC	5 cut(s)	228, 370, 373, 403, 442
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	3 cut(s)	175, 347, 361
BmiI	GGNNCC	3 cut(s)	315, 363, 481
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	413, 452
BpmI	CTGGAG	3 cut(s)	285, 366, 381
Bpu14I	TTCGAA	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	276, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 503
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	276, 471
BseLI	CCNNNNNNNGG	2 cut(s)	476, 503
BseMII	CTCAG	3 cut(s)	57, 64, 177
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	5 cut(s)	213, 358, 380, 413, 427
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	3 cut(s)	62, 69, 483
BshFI	GGCC	2 cut(s)	176, 362
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	476, 503
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	176, 362
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	2 cut(s)	176, 362
BspCNI	CTCAG	3 cut(s)	58, 63, 176
BspLI	GGNNCC	3 cut(s)	315, 363, 481
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	2 cut(s)	421, 430
BspT104I	TTCGAA	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	276, 471
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	2 cut(s)	276, 471
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	4 cut(s)	45, 288, 388, 438
BstDEI	CTNAG	4 cut(s)	50, 66, 163, 540
BstDSI	CCRYGG	1 cut(s)	471
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	213, 358, 380, 413, 427
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	176, 362
BtgI	CCRYGG	1 cut(s)	471
BveI	ACCTGC	2 cut(s)	421, 430
Cac8I	GCNNGC	4 cut(s)	45, 288, 388, 438
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	175, 347, 361
CviAII	CATG	2 cut(s)	172, 472
DdeI	CTNAG	4 cut(s)	50, 66, 163, 540
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	276, 471
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	276, 471
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	2 cut(s)	276, 471
FaeI	CATG	2 cut(s)	175, 475
FaiI	YATR	5 cut(s)	92, 173, 338, 345, 473
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	2 cut(s)	171, 471
Fnu4HI	GCNGC	5 cut(s)	227, 369, 372, 402, 441
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	5 cut(s)	227, 369, 372, 402, 441
FspBI	CTAG	2 cut(s)	242, 248
GluI	GCNGC	5 cut(s)	227, 369, 372, 402, 441
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	3 cut(s)	285, 366, 381
HaeIII	GGCC	2 cut(s)	176, 362
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	2 cut(s)	175, 475
HinfI	GANTC	3 cut(s)	116, 149, 206
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	109, 187
Hpy188III	TCNNGA	4 cut(s)	16, 146, 210, 248
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	31, 84, 262
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	9 cut(s)	43, 86, 229, 340, 368, 416, 431, 443, 500
HpyF3I	CTNAG	4 cut(s)	50, 66, 163, 540
Hsp92II	CATG	2 cut(s)	175, 475
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	5 cut(s)	223, 304, 379, 385, 400
Lsp1109I	GCAGC	5 cut(s)	213, 358, 380, 413, 427
LweI	GCATC	2 cut(s)	413, 452
MaeI	CTAG	2 cut(s)	242, 248
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	125
MspA1I	CMGCKG	3 cut(s)	371, 440, 460
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	504
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	175, 475
NlaIV	GGNNCC	3 cut(s)	315, 363, 481
NmuCI	GTSAC	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	421
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	149, 206
PkrI	GCNGC	5 cut(s)	228, 370, 373, 403, 442
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	315, 363, 481
PspPI	GGNCC	3 cut(s)	175, 347, 361
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	371, 440
SacI	GAGCTC	1 cut(s)	255
SatI	GCNGC	5 cut(s)	227, 369, 372, 402, 441
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	3 cut(s)	175, 347, 361
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	2 cut(s)	413, 452
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	1 cut(s)	347
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	458
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	2 cut(s)	242, 248
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	2 cut(s)	276, 471
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	1 cut(s)	134
TasI	AATT	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	149, 206
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	5 cut(s)	226, 368, 371, 401, 440
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	141, 160, 248
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	247
XspI	CTAG	2 cut(s)	242, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.