Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008330

Physical Location & Seq

Genomic Coordinates Reverse (-)

76625306 .. 76627228

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTTCTTTCACTGCCCCTTGTCCCAAACCTTGTTCTGCCCCAATTGTTCGACTTGCTGCGTCACAGAGCTCACAGACCCAGCAGCAGCTCCTTTCCTTCCACAACTGTCTCAATCGGTCTTCCTTGCTCCAAGCCTCTGGGCTCCAGAGCAACATCAAGAAGCAATCTGGTGCTTGGAAGGTGCAGGCACTCAGTAAGGTCGCTACTGAGAAACCTTCAAATTCTGCACCCATAAATAACACCAAATCTGAAGATGAGTCTGCGGAAAAGGTTTCAAACAATATTCCAGATGCATCATCAATCTCAGCATTCATGGCCCAAGTATCAGACCTTGTCAAGTTAGTGGATTCAAGAGATATTGTGGAGTTGCAAATGAAGCAACTAGATCTAGAGCTCGTAATAAGAAAGAAAGAAGCCTTGGAGAAGCCAGCACCACAAGCTCCAGTTGCTTCGGCACCACCACCTTATCCTTATCCTATGCAATATGGTCCACCACCACCTGCCCCAGCAGCTGCTCCTGCTCCAGCAAGCCCAGCTCCAGCAGCATCAGCACCTGCATTACCTGCCCCTGCAAAGCCAGCTGCATCAGCTCACCCACCGCTGAAATGCCCCATGGCTGGAACCTTTTACCGTTGTCCTGGACCTGGCGAACCACCTTTTGTCAAGGCAAGAGATAAAGTGCAGAAAGGTCAAGTCATTTGCATCATTGAGGCCATGAAGTTGATGAATGAAATTGAGGCTGATCAATCAGGAACCATAGTTGAGGTACTTGCTGAGGATGCAAAACCAGTGAGCGTAGACACGCCTCTTTTTGTCATAGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

277

Amino Acids

29.01

Weight (kDa)

8.15

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	202 - 274	5.4e-21	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15530
fragaria_vesca	FvH4_6g47090 FvH4_6g47090 FvH4_6g47090 FvH4_6g47090
malus_domestica	MD09G1064200.v1.1 MD10G1103400.v1.1 MD17G1057500.v1.1
prunus_persica	Prupe.3G256800_v2.0.a1
pyrus_communis	pycom111g05390 pycom17g05760
rosa_chinensis	RchiOBHm_Chr2g0166141
rosa_laevigata	RLG00000021589
rosa_multiflora	Rmu_co8361143.1_g000001 Rmu_sc0006218.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085170
rosa_rugosa	Rorug02G0520700 Rorug02G0520700
rosa_samantha	Rh2AG586700 Rh2BG598500 Rh2CG569200 Rh2DG608400
rosa_wichuraiana	Rw2G048910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	511, 565
Acc36I	ACCTGC	3 cut(s)	511, 565, 574
AccB1I	GGYRCC	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	801
AciI	CCGC	2 cut(s)	266, 602
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	2 cut(s)	620, 647
AgsI	TTSAA	3 cut(s)	222, 279, 354
AjnI	CCWGG	2 cut(s)	640, 646
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	8 cut(s)	72, 91, 397, 443, 515, 539, 584, 593
AluI	AGCT	8 cut(s)	72, 91, 397, 443, 515, 539, 584, 593
Alw21I	GWGCWC	2 cut(s)	74, 399
Alw26I	GTCTC	1 cut(s)	116
AlwNI	CAGNNNCTG	2 cut(s)	515, 557
AoxI	GGCC	2 cut(s)	318, 714
ApeKI	GCWGC	7 cut(s)	59, 85, 88, 512, 515, 545, 584
ApoI	RAATTY	1 cut(s)	223
AspS9I	GGNCC	3 cut(s)	319, 491, 644
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	491, 644
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	3 cut(s)	74, 147, 399
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	74, 399
BbvCI	CCTCAGC	1 cut(s)	777
BbvI	GCAGC	7 cut(s)	46, 97, 100, 502, 524, 557, 571
BciT130I	CCWGG	2 cut(s)	642, 648
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	386, 392
BfuAI	ACCTGC	3 cut(s)	511, 565, 574
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	7 cut(s)	60, 86, 89, 513, 516, 546, 585
BlsI	GCNGC	7 cut(s)	61, 87, 90, 514, 517, 547, 586
Bme1390I	CCNGG	2 cut(s)	642, 648
Bme18I	GGWCC	2 cut(s)	491, 644
BmgT120I	GGNCC	3 cut(s)	319, 491, 644
BmiI	GGNNCC	4 cut(s)	146, 459, 625, 757
BmrFI	CCNGG	2 cut(s)	642, 648
BmsI	GCATC	6 cut(s)	283, 305, 557, 596, 714, 772
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	4 cut(s)	131, 429, 510, 525
Bpu10I	CCTNAGC	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	420, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 647
Bse1I	ACTGG	2 cut(s)	446, 791
BseBI	CCWGG	2 cut(s)	642, 648
BseDI	CCNNGG	2 cut(s)	420, 615
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	2 cut(s)	620, 647
BseMII	CTCAG	4 cut(s)	201, 208, 321, 768
BseNI	ACTGG	2 cut(s)	446, 791
BseXI	GCAGC	7 cut(s)	46, 97, 100, 502, 524, 557, 571
BseYI	CCCAGC	3 cut(s)	81, 508, 535
BsgI	GTGCAG	3 cut(s)	206, 213, 704
BshFI	GGCC	2 cut(s)	320, 716
BshNI	GGYRCC	1 cut(s)	457
BsiHKAI	GWGCWC	2 cut(s)	74, 399
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	620, 647
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	320, 716
Bsp1286I	GDGCHC	3 cut(s)	74, 147, 399
Bsp143I	GATC	2 cut(s)	388, 745
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	2 cut(s)	266, 602
BspANI	GGCC	2 cut(s)	320, 716
BspCNI	CTCAG	4 cut(s)	202, 207, 320, 769
BspLI	GGNNCC	4 cut(s)	146, 459, 625, 757
BspMI	ACCTGC	3 cut(s)	511, 565, 574
BspT107I	GGYRCC	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	446, 791
BssECI	CCNNGG	2 cut(s)	420, 615
BssMI	GATC	2 cut(s)	388, 745
BssT1I	CCWWGG	2 cut(s)	420, 615
Bst2UI	CCWGG	2 cut(s)	642, 648
Bst4CI	ACNGT	2 cut(s)	110, 635
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	4 cut(s)	189, 432, 532, 582
BstDEI	CTNAG	4 cut(s)	194, 210, 307, 777
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	787
BstKTI	GATC	2 cut(s)	391, 748
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	388, 745
BstNI	CCWGG	2 cut(s)	642, 648
BstSCI	CCNGG	2 cut(s)	640, 646
BstV1I	GCAGC	7 cut(s)	46, 97, 100, 502, 524, 557, 571
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	320, 716
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	1 cut(s)	787
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 798
BveI	ACCTGC	3 cut(s)	511, 565, 574
Cac8I	GCNNGC	4 cut(s)	189, 432, 532, 582
CaiI	CAGNNNCTG	2 cut(s)	515, 557
Cfr13I	GGNCC	3 cut(s)	319, 491, 644
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	3 cut(s)	316, 616, 718
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	4 cut(s)	194, 210, 307, 777
DpnI	GATC	2 cut(s)	390, 747
DpnII	GATC	2 cut(s)	388, 745
Ecl136II	GAGCTC	2 cut(s)	72, 397
Eco130I	CCWWGG	2 cut(s)	420, 615
Eco24I	GRGCYC	3 cut(s)	74, 147, 399
Eco47I	GGWCC	2 cut(s)	491, 644
Eco53kI	GAGCTC	2 cut(s)	72, 397
Eco57I	CTGAAG	1 cut(s)	273
EcoICRI	GAGCTC	2 cut(s)	72, 397
EcoRII	CCWGG	2 cut(s)	640, 646
EcoT14I	CCWWGG	2 cut(s)	420, 615
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	3 cut(s)	74, 147, 399
ErhI	CCWWGG	2 cut(s)	420, 615
FaeI	CATG	3 cut(s)	319, 619, 721
FaiI	YATR	8 cut(s)	236, 317, 482, 489, 617, 719, 761, 821
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	3 cut(s)	315, 615, 717
FbaI	TGATCA	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	7 cut(s)	60, 86, 89, 513, 516, 546, 585
FokI	GGATG	1 cut(s)	794
FriOI	GRGCYC	3 cut(s)	74, 147, 399
Fsp4HI	GCNGC	7 cut(s)	60, 86, 89, 513, 516, 546, 585
FspBI	CTAG	2 cut(s)	386, 392
GluI	GCNGC	7 cut(s)	60, 86, 89, 513, 516, 546, 585
GsaI	CCCAGC	3 cut(s)	85, 512, 539
GsuI	CTGGAG	4 cut(s)	131, 429, 510, 525
HaeIII	GGCC	2 cut(s)	320, 716
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	319, 619, 721
HinfI	GANTC	2 cut(s)	260, 350
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	494, 802
Hpy188I	TCNGA	2 cut(s)	253, 331
Hpy188III	TCNNGA	6 cut(s)	148, 160, 290, 354, 392, 753
Hpy8I	GTNNAC	2 cut(s)	494, 802
HpyAV	CCTTC	3 cut(s)	109, 175, 228
HpyCH4III	ACNGT	2 cut(s)	110, 635
HpyF3I	CTNAG	4 cut(s)	194, 210, 307, 777
Hsp92II	CATG	3 cut(s)	319, 619, 721
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	2 cut(s)	388, 745
LmnI	GCTCC	7 cut(s)	96, 135, 150, 448, 523, 529, 544
Lsp1109I	GCAGC	7 cut(s)	46, 97, 100, 502, 524, 557, 571
LweI	GCATC	6 cut(s)	283, 305, 557, 596, 714, 772
MaeI	CTAG	2 cut(s)	386, 392
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	2 cut(s)	390, 747
MboI	GATC	2 cut(s)	388, 745
MboII	GAAGA	2 cut(s)	114, 266
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	3 cut(s)	74, 147, 399
MluCI	AATT	3 cut(s)	45, 223, 735
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	6 cut(s)	148, 706, 733, 760, 772, 819
Mph1103I	ATGCAT	1 cut(s)	298
MspA1I	CMGCKG	3 cut(s)	515, 584, 604
MspR9I	CCNGG	2 cut(s)	642, 648
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	2 cut(s)	642, 648
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	2 cut(s)	388, 745
NlaIII	CATG	3 cut(s)	319, 619, 721
NlaIV	GGNNCC	4 cut(s)	146, 459, 625, 757
NmuCI	GTSAC	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	298
PaqCI	CACCTGC	2 cut(s)	511, 565
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	350
PflFI	GACNNNGTC	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	7 cut(s)	61, 87, 90, 514, 517, 547, 586
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp124BI	GAGCTC	2 cut(s)	74, 399
Psp6I	CCWGG	2 cut(s)	640, 646
PspFI	CCCAGC	3 cut(s)	81, 508, 535
PspGI	CCWGG	2 cut(s)	640, 646
PspN4I	GGNNCC	4 cut(s)	146, 459, 625, 757
PspPI	GGNCC	3 cut(s)	319, 491, 644
PstNI	CAGNNNCTG	2 cut(s)	515, 557
PsuI	RGATCY	1 cut(s)	388
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	2 cut(s)	515, 584
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
SacI	GAGCTC	2 cut(s)	74, 399
SatI	GCNGC	7 cut(s)	60, 86, 89, 513, 516, 546, 585
Sau3AI	GATC	2 cut(s)	388, 745
Sau96I	GGNCC	3 cut(s)	319, 491, 644
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	642, 648
SduI	GDGCHC	3 cut(s)	74, 147, 399
SfaNI	GCATC	6 cut(s)	283, 305, 557, 596, 714, 772
SinI	GGWCC	2 cut(s)	491, 644
Sse9I	AATT	3 cut(s)	45, 223, 735
SsiI	CCGC	2 cut(s)	266, 602
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	386, 392
SstI	GAGCTC	2 cut(s)	74, 399
StyD4I	CCNGG	2 cut(s)	640, 646
StyI	CCWWGG	2 cut(s)	420, 615
TaaI	ACNGT	2 cut(s)	110, 635
TaqI	TCGA	1 cut(s)	52
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	45, 223, 735
TfiI	GAWTC	1 cut(s)	350
TscAI	CASTG	2 cut(s)	19, 798
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	7 cut(s)	59, 85, 88, 512, 515, 545, 584
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	5 cut(s)	304, 392, 734, 743, 747
TspRI	CASTG	2 cut(s)	19, 798
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	491, 644
XapI	RAATTY	1 cut(s)	223
XbaI	TCTAGA	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	801
XspI	CTAG	2 cut(s)	386, 392
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.