Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008330

Physical Location & Seq

Genomic Coordinates Reverse (-)

16848880 .. 16849708

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1103400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTATATCGTATTATACTGTCACAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCTCGTCTCGACTCGACTCCGCCACCCAAAATCGAGCTTTGCTTCACAGCCACTCCAATGGCTTCCCTCACTGTCCTCTGTCCTAGGGCGTGCTCTGCCCCCGGTACCTGCCTCAACTCCTCCGCCCAGTCGTCGCAGCTACAACAACACCTACTCTCTTCCAACAATTGCCTCAATCGCTACTCCATTCCATCTCTACAAATTTCTGGCCTTCAGGTCATGCATGCTTGGAGAAGGGAAAATATTAAGGGTTTTTGCATGTGTCGCTGCATCTCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

117

Amino Acids

12.71

Weight (kDa)

8.66

Isoelectric Point (pI)

71.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15530
fragaria_vesca	FvH4_6g47090 FvH4_6g47090 FvH4_6g47090 FvH4_6g47090
malus_domestica	MD09G1064200.v1.1 MD10G1103400.v1.1 MD17G1057500.v1.1
prunus_persica	Prupe.3G256800_v2.0.a1
pyrus_communis	pycom111g05390 pycom17g05760
rosa_chinensis	RchiOBHm_Chr2g0166141
rosa_laevigata	RLG00000021589
rosa_multiflora	Rmu_co8361143.1_g000001 Rmu_sc0006218.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085170
rosa_rugosa	Rorug02G0520700 Rorug02G0520700
rosa_samantha	Rh2AG586700 Rh2BG598500 Rh2CG569200 Rh2DG608400
rosa_wichuraiana	Rw2G048910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	2 cut(s)	89, 192
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	175
AluBI	AGCT	2 cut(s)	106, 208
AluI	AGCT	2 cut(s)	106, 208
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	3 cut(s)	32, 75, 80
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	205, 336
ApoI	RAATTY	1 cut(s)	270
Asp718I	GGTACC	1 cut(s)	173
AspA2I	CCTAGG	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	171
AvrII	CCTAGG	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	217, 323
BccI	CCATC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	3 cut(s)	32, 75, 80
BfaI	CTAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	206, 337
BlnI	CCTAGG	1 cut(s)	152
BlsI	GCNGC	2 cut(s)	207, 338
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	152, 169
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bse1I	ACTGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	152, 169
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	217, 323
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	171
BsmAI	GTCTC	3 cut(s)	32, 75, 80
BsmBI	CGTCTC	2 cut(s)	75, 80
BsnI	GGCC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	164
BspACI	CCGC	2 cut(s)	89, 192
BspANI	GGCC	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	152, 169
BssT1I	CCWWGG	1 cut(s)	152
Bst4CI	ACNGT	3 cut(s)	20, 26, 142
Bst6I	CTCTTC	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	160, 294
BstMAI	GTCTC	3 cut(s)	32, 75, 80
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 246, 333
BstNSI	RCATGY	2 cut(s)	296, 331
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	217, 323
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	2 cut(s)	160, 294
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	289, 293, 328
CviJI	RGCY	5 cut(s)	106, 119, 131, 208, 279
CviKI_1	RGCY	5 cut(s)	106, 119, 131, 208, 279
CviQI	GTAC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
EciI	GGCGGA	2 cut(s)	78, 181
Eco130I	CCWWGG	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	152
Esp3I	CGTCTC	2 cut(s)	75, 80
FaeI	CATG	3 cut(s)	292, 296, 331
FaiI	YATR	5 cut(s)	6, 16, 290, 294, 329
FatI	CATG	3 cut(s)	288, 292, 327
Fnu4HI	GCNGC	2 cut(s)	206, 337
Fsp4HI	GCNGC	2 cut(s)	206, 337
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	2 cut(s)	206, 337
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	3 cut(s)	292, 296, 331
HinfI	GANTC	2 cut(s)	80, 85
HpaII	CCGG	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	290, 297
HpyCH4III	ACNGT	3 cut(s)	20, 26, 142
HpyCH4V	TGCA	3 cut(s)	292, 327, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 246, 333
Hsp92II	CATG	3 cut(s)	292, 296, 331
KpnI	GGTACC	1 cut(s)	177
LpnPI	CCDG	5 cut(s)	184, 190, 209, 261, 269
Lsp1109I	GCAGC	2 cut(s)	217, 323
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	219
MfeI	CAATTG	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	2 cut(s)	235, 270
MlyI	GAGTC	2 cut(s)	74, 79
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	146, 155, 191, 199, 251
Mph1103I	ATGCAT	1 cut(s)	294
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	164, 246, 333
NciI	CCSGG	1 cut(s)	171
NlaIII	CATG	3 cut(s)	292, 296, 331
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	2 cut(s)	296, 331
PaeI	GCATGC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	207, 338
PleI	GAGTC	2 cut(s)	74, 79
PpsI	GAGTC	2 cut(s)	74, 79
PspN4I	GGNNCC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	206, 337
SchI	GAGTC	2 cut(s)	74, 79
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	5 cut(s)	108, 179, 210, 222, 288
SmiMI	CAYNNNNRTG	1 cut(s)	125
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	2 cut(s)	235, 270
SsiI	CCGC	2 cut(s)	89, 192
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	20, 26, 142
TaqI	TCGA	3 cut(s)	78, 83, 102
TasI	AATT	2 cut(s)	235, 270
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	205, 336
Tsp45I	GTSAC	1 cut(s)	20
TspRI	CASTG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	2 cut(s)	296, 331
XmaJI	CCTAGG	1 cut(s)	152
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.