FvH4_6g47240

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014778
Physical Location & Seq
Forward (+)
35871614 .. 35873221
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47240.t1

Sequence Viewer

Length: 1608 bp
ATGGAGAGAGGTAAAGGGCATGTGTGCAAGCTCTGTGGTCAGAGATTTGTGAGCGGCAAGGTCCTGGGAGGTCACATGAGGTCTCACGCTTTCAAGAATCCGATCAAAGAGAAAAGAGTGCACAAGAAATCCCACGTGGGTTTTCAAGATGAAGGTGCCAATGTGGGTTATGGCCTGAGGCTAAACCCCAAAAGGTCATGGAGATTTTCAGGAAAAGAAGAAGAAGAAGAACAAGAAGAAGAAGAGGTGGAGATTCTGTGCAAGGTTTGTGGGAAAGCGTTTGAGTCAAAGAACAGTCTTTTTGGTCATATGAGGCATCACTCTGTGAAACAGAGGAGTGAGGCTCAGAGGTGTAGAGATTGCGGTAAAGGGTTTGAGTCTTTGAAGTCTTTGGGTGTTCATAGGAGAGTTCATACAAGAAGATTGAAGGGTGTTGATGAAGCAGAGAGGAGTTTAGCCCAGAAGCTTTGGATTGAGAATTTGGAGGTGGTGAGGAGAAAAAGATCTGCAAGATTCAGGTACAGGATTGGTTCTTCTCCTAGTTCTTCATCGTTTTCTGGTTTGAATTTGAATGAATGTGGATTTGGTAATGGGTGTGGAGTAGATATAGAAGAGGCTGCTTTTTGCTTGATGATGATTTCCAGGGGTTTAGGGAATTGGGGTCAGATTAGTTCAGTGACTGAGTCCTCAAATAACAACTCGTTTTCTGTTGAGGTTGTGTCACCGAGTCAAAAGAAGCGATTTAGGGACAATGAGGTGGGGGGTTTTGGTTGTGATGGTGATTCTGGGTCTTCACAGATCAAAAGGGCCAAGGTGGAGATGTCTGCTGATTGTGTTTTGGATTATGAGAATGGCTCTAGTGTAAAGGCAGTGTCTGAATTTGGTGATGGGTTTCTAAGTGATGAGATGCCTAAATCTGGGTTTGTGTTATATGGCATTGAGGAATTGGATGTCAAAATGAGTGAGGAAGTGGAAGTGGGTTTATCAGGTTTGGGGTCTATGAAGTTTGGTTTGAGCAAGGGGGCTGTGTTGAAGGCTTGTGATTCTGTGAACAAAGTGGTGTGTGCTACTGAATCTGAAACCTTTGCTGATTCTGAGAAGAAAAGAGAACACATGTGCAGGATATGCAGAAGGGTTTTCAGTAGCCCTCAGGCACTTGGAGGCCACCAGAGAGTTCATAAGAGAGATCACAAAAGTTCAGGGCTGAAGAATGAGGATGGTGAAGACAGAACTCAGATTGGCACATTTTGTGAGACTGAGGATAAGTGCAATCCTGCCAAACTTCAATGTAGTTATAGCTCAGTGGAGCAGGAGATGGAAACTGTAACAGTGGGAGGTTCTGAGAGAAAGGGTCACATTTGTGGAATATGCTTGAAGGTTTTTCCATCAGGTCAAGCTTTGGGTGGTCACAAGAGGTCTCATTATGTCAAGGACTCGGAGATAGCGACAGAAGAGACCAGAGTAATGAAGCAACAGATTTCTGATATCTGTGATGCATTTGAAGTCGGTCACAAACTTCAGGAGGAGAATGATGGTGTTGAATATAAGCCATGGTGGACTGGAACTGAACAGAAGCATGAGATGCTGGTGGGTTTGATCCCCAACTAA

Protein Analysis

536

Amino Acids

59.51

Weight (kDa)

7.98

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 7 - 29 1.2e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 452 - 475 4.8e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47240
malus_domestica MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica Prupe.3G257500_v2.0.a1
pyrus_communis pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis RchiOBHm_Chr2g0166281
rosa_laevigata RLG00000021603
rosa_multiflora Rmu_sc0024214.1_g000001
rosa_roxburghii Rroxscaffold_2G00085020
rosa_rugosa Rorug02G0521800
rosa_samantha Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana Rw2G049000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 2 cut(s) 54, 363
AclWI GGATC 1 cut(s) 1591
AcsI RAATTY 3 cut(s) 478, 565, 878
AcuI CTGAAG 2 cut(s) 1226, 1502
AcvI CACGTG 1 cut(s) 136
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 917
AflIII ACRYGT 1 cut(s) 1113
AjnI CCWGG 2 cut(s) 63, 641
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AleI CACNNNNGTG 1 cut(s) 1359
AluBI AGCT 4 cut(s) 31, 466, 1299, 1397
AluI AGCT 4 cut(s) 31, 466, 1299, 1397
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 4 cut(s) 87, 1247, 1422, 1448
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 1591
AlwNI CAGNNNCTG 2 cut(s) 680, 875
AoxI GGCC 3 cut(s) 172, 807, 1162
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 3 cut(s) 478, 565, 878
AspS9I GGNCC 2 cut(s) 61, 807
AsuHPI GGTGA 5 cut(s) 502, 714, 791, 896, 1232
AvaII GGWCC 1 cut(s) 61
AxyI CCTNAGG 2 cut(s) 176, 1149
BaeGI GKGCMC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 155
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 783, 1230
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 604
BccI CCATC 6 cut(s) 770, 881, 1211, 1309, 1393, 1526
BciT130I CCWGG 2 cut(s) 65, 643
BcoDI GTCTC 4 cut(s) 87, 1247, 1422, 1448
BfaI CTAG 2 cut(s) 540, 858
BglII AGATCT 1 cut(s) 503
BisI GCNGC 2 cut(s) 55, 618
BlsI GCNGC 2 cut(s) 56, 619
Bme1390I CCNGG 2 cut(s) 65, 643
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 61, 807
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 65, 643
BmsI GCATC 4 cut(s) 325, 897, 1483, 1572
BpiI GAAGAC 2 cut(s) 783, 1230
BplI GAGNNNNNCTC 4 cut(s) 328, 360, 839, 871
BsaAI YACGTR 1 cut(s) 136
BsaI GGTCTC 3 cut(s) 87, 1422, 1448
BsaJI CCNNGG 4 cut(s) 64, 642, 810, 1550
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 917
Bse1I ACTGG 1 cut(s) 1564
Bse21I CCTNAGG 2 cut(s) 176, 1149
BseBI CCWGG 2 cut(s) 65, 643
BseDI CCNNGG 4 cut(s) 64, 642, 810, 1550
BseGI GGATG 2 cut(s) 955, 1222
BseLI CCNNNNNNNGG 1 cut(s) 917
BseMII CTCAG 9 cut(s) 167, 359, 672, 1086, 1163, 1247, 1248, 1314, 1332
BseNI ACTGG 1 cut(s) 1564
BseRI GAGGAG 4 cut(s) 349, 463, 508, 1538
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 1 cut(s) 604
BsgI GTGCAG 1 cut(s) 1138
BshFI GGCC 3 cut(s) 174, 809, 1164
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 1 cut(s) 917
BsmAI GTCTC 4 cut(s) 87, 1247, 1422, 1448
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 3 cut(s) 174, 809, 1164
Bso31I GGTCTC 3 cut(s) 87, 1422, 1448
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 5 cut(s) 102, 503, 798, 1186, 1596
Bsp19I CCATGG 1 cut(s) 1550
BspACI CCGC 2 cut(s) 54, 363
BspANI GGCC 3 cut(s) 174, 809, 1164
BspCNI CTCAG 9 cut(s) 168, 358, 673, 1087, 1162, 1246, 1249, 1313, 1333
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 1 cut(s) 1591
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 3 cut(s) 87, 1422, 1448
BsrBI CCGCTC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 1564
BssECI CCNNGG 4 cut(s) 64, 642, 810, 1550
BssMI GATC 5 cut(s) 102, 503, 798, 1186, 1596
BssT1I CCWWGG 2 cut(s) 810, 1550
Bst2UI CCWGG 2 cut(s) 65, 643
Bst4CI ACNGT 3 cut(s) 296, 1324, 1330
Bst6I CTCTTC 3 cut(s) 237, 606, 1446
BstAPI GCANNNNNTGC 2 cut(s) 1125, 1582
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 29
BstDSI CCRYGG 1 cut(s) 1550
BstF5I GGATG 2 cut(s) 955, 1222
BstKTI GATC 5 cut(s) 105, 506, 801, 1189, 1599
BstMAI GTCTC 4 cut(s) 87, 1247, 1422, 1448
BstMBI GATC 5 cut(s) 102, 503, 798, 1186, 1596
BstMWI GCNNNNNNNGC 2 cut(s) 1125, 1582
BstNI CCWGG 2 cut(s) 65, 643
BstNSI RCATGY 2 cut(s) 23, 1117
BstSCI CCNGG 2 cut(s) 63, 641
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 604
BstV2I GAAGAC 2 cut(s) 783, 1230
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
Bsu36I CCTNAGG 2 cut(s) 176, 1149
BsuRI GGCC 3 cut(s) 174, 809, 1164
BtgI CCRYGG 1 cut(s) 1550
BtsCI GGATG 2 cut(s) 955, 1222
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 4 cut(s) 681, 876, 1308, 1335
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 2 cut(s) 680, 875
Cfr13I GGNCC 2 cut(s) 61, 807
Csp6I GTAC 1 cut(s) 520
CspCI CAANNNNNGTGG 4 cut(s) 16, 51, 250, 285
CviAII CATG 6 cut(s) 20, 76, 198, 1114, 1551, 1577
CviQI GTAC 1 cut(s) 520
DpnI GATC 5 cut(s) 104, 505, 800, 1188, 1598
DpnII GATC 5 cut(s) 102, 503, 798, 1186, 1596
DraIII CACNNNGTG 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 237, 606, 1446
EarI CTCTTC 3 cut(s) 237, 606, 1446
Eco130I CCWWGG 2 cut(s) 810, 1550
Eco31I GGTCTC 3 cut(s) 87, 1422, 1448
Eco32I GATATC 1 cut(s) 1486
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 1226, 1502
Eco72I CACGTG 1 cut(s) 136
Eco81I CCTNAGG 2 cut(s) 176, 1149
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 63, 641
EcoRV GATATC 1 cut(s) 1486
EcoT14I CCWWGG 2 cut(s) 810, 1550
EcoT22I ATGCAT 1 cut(s) 1498
ErhI CCWWGG 2 cut(s) 810, 1550
FaeI CATG 6 cut(s) 23, 79, 201, 1117, 1554, 1580
FaqI GGGAC 1 cut(s) 761
FatI CATG 6 cut(s) 19, 75, 197, 1113, 1550, 1576
FauNDI CATATG 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 55, 618
FokI GGATG 2 cut(s) 962, 1229
Fsp4HI GCNGC 2 cut(s) 55, 618
FspBI CTAG 2 cut(s) 540, 858
GluI GCNGC 2 cut(s) 55, 618
HaeIII GGCC 3 cut(s) 174, 809, 1164
Hin1II CATG 6 cut(s) 23, 79, 201, 1117, 1554, 1580
HindIII AAGCTT 2 cut(s) 464, 1395
HphI GGTGA 5 cut(s) 502, 714, 791, 896, 1232
Hpy166II GTNNAC 3 cut(s) 121, 1051, 1557
Hpy188III TCNNGA 4 cut(s) 94, 146, 210, 1520
Hpy8I GTNNAC 3 cut(s) 121, 1051, 1557
HpyAV CCTTC 5 cut(s) 146, 421, 1027, 1125, 1369
HpyCH4III ACNGT 3 cut(s) 296, 1324, 1330
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 8 cut(s) 27, 121, 261, 509, 1119, 1128, 1269, 1496
HpyF10VI GCNNNNNNNGC 2 cut(s) 1125, 1582
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 6 cut(s) 23, 79, 201, 1117, 1554, 1580
Kzo9I GATC 5 cut(s) 102, 503, 798, 1186, 1596
LmnI GCTCC 1 cut(s) 1306
Lsp1109I GCAGC 1 cut(s) 604
LweI GCATC 4 cut(s) 325, 897, 1483, 1572
MaeI CTAG 2 cut(s) 540, 858
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 7 cut(s) 71, 676, 720, 1324, 1352, 1406, 1508
MalI GATC 5 cut(s) 104, 505, 800, 1188, 1598
MbiI CCGCTC 1 cut(s) 54
MboI GATC 5 cut(s) 102, 503, 798, 1186, 1596
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 5 cut(s) 478, 565, 655, 878, 944
MlyI GAGTC 5 cut(s) 293, 386, 692, 736, 1427
Mph1103I ATGCAT 1 cut(s) 1498
MslI CAYNNNNRTG 1 cut(s) 1359
MspR9I CCNGG 2 cut(s) 65, 643
MvaI CCWGG 2 cut(s) 65, 643
MwoI GCNNNNNNNGC 2 cut(s) 1125, 1582
NcoI CCATGG 1 cut(s) 1550
NdeI CATATG 1 cut(s) 309
NdeII GATC 5 cut(s) 102, 503, 798, 1186, 1596
NlaIII CATG 6 cut(s) 23, 79, 201, 1117, 1554, 1580
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 6 cut(s) 71, 676, 720, 1352, 1406, 1508
NsiI ATGCAT 1 cut(s) 1498
NspI RCATGY 2 cut(s) 23, 1117
OliI CACNNNNGTG 1 cut(s) 1359
PciI ACATGT 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 1 cut(s) 1442
PfeI GAWTC 7 cut(s) 97, 253, 513, 782, 1043, 1073, 1091
PflFI GACNNNGTC 1 cut(s) 682
PkrI GCNGC 2 cut(s) 56, 619
PleI GAGTC 5 cut(s) 292, 385, 691, 735, 1427
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 5 cut(s) 292, 385, 691, 735, 1427
Ppu21I YACGTR 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 61
PscI ACATGT 1 cut(s) 1113
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 63, 641
PspCI CACGTG 1 cut(s) 136
PspGI CCWGG 2 cut(s) 63, 641
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 61, 807
PspPPI RGGWCCY 1 cut(s) 61
PstNI CAGNNNCTG 2 cut(s) 680, 875
PsuI RGATCY 1 cut(s) 503
PsyI GACNNNGTC 1 cut(s) 682
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 1359
SatI GCNGC 2 cut(s) 55, 618
Sau3AI GATC 5 cut(s) 102, 503, 798, 1186, 1596
Sau96I GGNCC 2 cut(s) 61, 807
SchI GAGTC 5 cut(s) 293, 386, 692, 736, 1427
ScrFI CCNGG 2 cut(s) 65, 643
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 4 cut(s) 325, 897, 1483, 1572
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 1359
Sse9I AATT 5 cut(s) 478, 565, 655, 878, 944
SsiI CCGC 2 cut(s) 54, 363
SspMI CTAG 2 cut(s) 540, 858
StyD4I CCNGG 2 cut(s) 63, 641
StyI CCWWGG 2 cut(s) 810, 1550
TaaI ACNGT 3 cut(s) 296, 1324, 1330
TaiI ACGT 1 cut(s) 138
TaqII GACCGA 1 cut(s) 1496
TasI AATT 5 cut(s) 478, 565, 655, 878, 944
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 7 cut(s) 97, 253, 513, 782, 1043, 1073, 1091
TscAI CASTG 4 cut(s) 681, 876, 1308, 1335
TseFI GTSAC 6 cut(s) 71, 676, 720, 1352, 1406, 1508
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 6 cut(s) 71, 676, 720, 1352, 1406, 1508
TspDTI ATGAA 9 cut(s) 165, 389, 401, 453, 537, 588, 1016, 1166, 1481
TspRI CASTG 4 cut(s) 681, 876, 1308, 1335
Tth111I GACNNNGTC 1 cut(s) 682
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 3 cut(s) 478, 565, 878
XceI RCATGY 2 cut(s) 23, 1117
XspI CTAG 2 cut(s) 540, 858
Zsp2I ATGCAT 1 cut(s) 1498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.