Prupe.3G257500_v2.0.a1

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
24509659 .. 24512060
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G257500.1

Sequence Viewer

Length: 1617 bp
ATGGAGCATAGATGTAAGCTCTGCAACAAGACTTTCTCGAGTGGCAAAGTCTTGGGAGGTCACATGAGAGGCCATGGAACAAAGAATTCAGCTAAAGCAGAGAAAAAGCTCAAAGTGAGCAACGTGGATTTTGAAGGTGATGACGATGAGCATGCTGGTTATGGCCTAAGAGTGAACCCCAAAAAGTCATGGAAATTTTCTGGCTCAAAGGTTCAAGCTTCTGAGAAAGAAAGCCTCTGCAAGGTCTGTGGAAAAAGGTTTGATTCAATGAAAGCTATGTTTGGTCACATGAGGCATCACTCGAGCAGAGAAAGGAAGGAGACTCAGTGTTGCAAAGATTGCGGTAAAGCATTTGAGTCATTGAGAGCTCTAACTGCTCATACCAAAATTCACTCAAAAAGGCTCAGGACCTCTGATGGATCGCAGAGCATTTCAAGCGAGAAGCTTTTTGTGGATTTCCAATACAGCACTGAGACCATGGGGCTGATCCGGAGGAAAAGATCAAAAAGATTAAGGTACAAGATCACTCCAAGTTCTTCTTTTTCTGGTATGAATGAATCTGAATTTGGCCAAGAAGTAGTGGATGGGGCTATTTGCTTGATGATCATCTCCAGAGGTGGAAGCAATTGGGGTCGAATTAGTTCAGTAACTGAGTCTTCAGATAACAATTCGTTGTCTTTGGAGGTTCAATCGCCAGTCCAAAAGAATCGGATCATGGGAAATAGGGGTGGCATTTCTGTTTGTAATGATACTGGGAACAAAATATTTGAATTTGGTGAAAATGATTCTGGGTTTGCAAGTGATGAGGAAAAGACTGGAAAATTGGAAGTTCCTATTGACAGGTTTTACAGGGGTGCAGAGTGCAAAAGGCCTAAACTAGATGAGGATTCTGCATTTGTGGGGTATGATGCTGAGATTGAGAAGGAAAGTCATGGAGAGATGGAAGCCATCCTCACTGAAGTGGAATTGGATGTGGATATTATAGAGGAAGAAGAGCTGGATGTAACTAAATTGGGCTCCATGAAGTCTGGTATGAAGGCTTGTGATTCTAGCAATAACATGTTATATGGTACTGAATCTGAAATCTTTGCTGATTCTCGGAAGAAAAGAGAACACAAGTGCAGGACTTGCAAGAAGCTTTTCCGCTCTCATCAGGCACTTGGAGGCCACCAAAGAGTTCATAAAGCAACTAACAACTGTTCTGGAGAGAAGATTGAGGACTCTGAAGATAAAATTCAGATTAACAAGCTTTCTAAGATTGAGTACAGTTGCAAGCTTGCCAAGCTTGAATGTACTGATAATTCAGAGGAGCAGGAGATGGAAAGAGCAACTGTGACTGGTTTTGAAAGTAAGGTTCACAGGTGCTCCATCTGCTTAAAGGTGTTTGCAACAGGCCAAGCTTTGGGTGGTCACAAGCGAGTTCATTTTGGTAAAGATTCTGAGACAGGAACAGAACAGACCAGAGCACTGAAGCAGCAGATTTCTGAAATCTGCGATGTCTTTGAACTAAGTCAACCAGTCAAACTTGAGGAAGAGAATGGTGATGTTGAATTCAAGTCCTGGTGGCTTGGAAATGAACATAAACGCGAGCTACTGGTGGGTCTGATGCCCAACTAA

Protein Analysis

539

Amino Acids

60.44

Weight (kDa)

7.78

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014778)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1402
AccBSI CCGCTC 1 cut(s) 1146
AccII CGCG 1 cut(s) 1587
AccIII TCCGGA 1 cut(s) 489
AciI CCGC 2 cut(s) 342, 1144
AclWI GGATC 3 cut(s) 427, 481, 719
AcoI YGGCCR 1 cut(s) 568
AcsI RAATTY 7 cut(s) 85, 194, 387, 563, 770, 1233, 1550
AcuI CTGAAG 4 cut(s) 642, 978, 1245, 1490
AfaI GTAC 4 cut(s) 518, 1072, 1265, 1294
AfiI CCNNNNNNNGG 2 cut(s) 241, 1402
AflIII ACRYGT 1 cut(s) 1059
AjnI CCWGG 1 cut(s) 1559
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AleI CACNNNNGTG 1 cut(s) 959
Alw21I GWGCWC 3 cut(s) 370, 1367, 1468
Alw26I GTCTC 3 cut(s) 314, 467, 1436
AlwI GGATC 3 cut(s) 427, 481, 719
AlwNI CAGNNNCTG 1 cut(s) 650
Ama87I CYCGRG 2 cut(s) 37, 301
Aor13HI TCCGGA 1 cut(s) 489
AoxI GGCC 6 cut(s) 70, 163, 568, 869, 1165, 1393
ApeKI GCWGC 1 cut(s) 1474
ApoI RAATTY 7 cut(s) 85, 194, 387, 563, 770, 1233, 1550
Asp700I GAANNNNTTC 2 cut(s) 640, 1139
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 3 cut(s) 149, 788, 1553
AvaI CYCGRG 2 cut(s) 37, 301
AvaII GGWCC 1 cut(s) 408
BalI TGGCCA 1 cut(s) 570
BanII GRGCYC 2 cut(s) 370, 1019
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 3 cut(s) 370, 1367, 1468
BbvI GCAGC 1 cut(s) 1486
BccI CCATC 6 cut(s) 410, 578, 934, 956, 1312, 1376
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 1561
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 3 cut(s) 314, 467, 1436
BfaI CTAG 2 cut(s) 878, 1050
BisI GCNGC 1 cut(s) 1475
BlsI GCNGC 1 cut(s) 1476
Bme1390I CCNGG 1 cut(s) 1561
Bme18I GGWCC 1 cut(s) 408
BmeT110I CYCGRG 2 cut(s) 37, 301
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 1018
BmrFI CCNGG 1 cut(s) 1561
BmrI ACTGGG 1 cut(s) 762
BmsI GCATC 3 cut(s) 304, 898, 1596
BmuI ACTGGG 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 648
BpmI CTGGAG 2 cut(s) 595, 1224
Bpu10I CCTNAGC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 1547
BsaBI GATNNNNATC 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 73, 477
BsaWI WCCGGW 1 cut(s) 489
BsaXI ACNNNNNCTCC 4 cut(s) 311, 341, 1349, 1379
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 1402
Bse1I ACTGG 6 cut(s) 695, 757, 820, 1342, 1517, 1599
Bse8I GATNNNNATC 1 cut(s) 605
BseAI TCCGGA 1 cut(s) 489
BseBI CCWGG 1 cut(s) 1561
BseDI CCNNGG 2 cut(s) 73, 477
BseGI GGATG 4 cut(s) 589, 948, 976, 1006
BseJI GATNNNNATC 1 cut(s) 605
BseLI CCNNNNNNNGG 2 cut(s) 241, 1402
BseMII CTCAG 7 cut(s) 213, 338, 418, 462, 642, 903, 1431
BseNI ACTGG 6 cut(s) 695, 757, 820, 1342, 1517, 1599
BseRI GAGGAG 1 cut(s) 1322
BseXI GCAGC 1 cut(s) 1486
BsgI GTGCAG 2 cut(s) 876, 1141
Bsh1236I CGCG 1 cut(s) 1587
BshFI GGCC 6 cut(s) 72, 165, 570, 871, 1167, 1395
BsiHKAI GWGCWC 3 cut(s) 370, 1367, 1468
BsiHKCI CYCGRG 2 cut(s) 37, 301
BsiSI CCGG 1 cut(s) 490
BslI CCNNNNNNNGG 2 cut(s) 241, 1402
BsmAI GTCTC 3 cut(s) 314, 467, 1436
BsnI GGCC 6 cut(s) 72, 165, 570, 871, 1167, 1395
Bso31I GGTCTC 1 cut(s) 467
BsoBI CYCGRG 2 cut(s) 37, 301
Bsp1286I GDGCHC 4 cut(s) 370, 1019, 1367, 1468
Bsp13I TCCGGA 1 cut(s) 489
Bsp143I GATC 6 cut(s) 419, 486, 500, 522, 603, 711
Bsp19I CCATGG 2 cut(s) 73, 477
BspACI CCGC 2 cut(s) 342, 1144
BspANI GGCC 6 cut(s) 72, 165, 570, 871, 1167, 1395
BspCNI CTCAG 7 cut(s) 214, 337, 417, 463, 643, 904, 1432
BspEI TCCGGA 1 cut(s) 489
BspFNI CGCG 1 cut(s) 1587
BspLI GGNNCC 1 cut(s) 1018
BspPI GGATC 3 cut(s) 427, 481, 719
BspQI GCTCTTC 1 cut(s) 987
BspTNI GGTCTC 1 cut(s) 467
BsrBI CCGCTC 1 cut(s) 1146
BsrI ACTGG 6 cut(s) 695, 757, 820, 1342, 1517, 1599
BssECI CCNNGG 2 cut(s) 73, 477
BssMI GATC 6 cut(s) 419, 486, 500, 522, 603, 711
BssT1I CCWWGG 2 cut(s) 73, 477
Bst2UI CCWGG 1 cut(s) 1561
Bst4CI ACNGT 3 cut(s) 1199, 1268, 1333
Bst6I CTCTTC 2 cut(s) 987, 1527
BstAPI GCANNNNNTGC 2 cut(s) 339, 1128
BstC8I GCNNGC 4 cut(s) 153, 1274, 1278, 1589
BstDSI CCRYGG 2 cut(s) 73, 477
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 4 cut(s) 589, 948, 976, 1006
BstFNI CGCG 1 cut(s) 1587
BstKTI GATC 6 cut(s) 422, 489, 503, 525, 606, 714
BstMAI GTCTC 3 cut(s) 314, 467, 1436
BstMBI GATC 6 cut(s) 419, 486, 500, 522, 603, 711
BstMWI GCNNNNNNNGC 6 cut(s) 339, 374, 435, 1128, 1282, 1371
BstNI CCWGG 1 cut(s) 1561
BstNSI RCATGY 2 cut(s) 155, 1063
BstSCI CCNGG 1 cut(s) 1559
BstUI CGCG 1 cut(s) 1587
BstV1I GCAGC 1 cut(s) 1486
BstV2I GAAGAC 1 cut(s) 648
BsuRI GGCC 6 cut(s) 72, 165, 570, 871, 1167, 1395
BtgI CCRYGG 2 cut(s) 73, 477
BtgZI GCGATG 1 cut(s) 1509
BtsCI GGATG 4 cut(s) 589, 948, 976, 1006
BtsIMutI CAGTG 4 cut(s) 332, 468, 954, 1466
Cac8I GCNNGC 4 cut(s) 153, 1274, 1278, 1589
CaiI CAGNNNCTG 1 cut(s) 650
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 4 cut(s) 517, 1071, 1264, 1293
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviQI GTAC 4 cut(s) 517, 1071, 1264, 1293
DpnI GATC 6 cut(s) 421, 488, 502, 524, 605, 713
DpnII GATC 6 cut(s) 419, 486, 500, 522, 603, 711
EaeI YGGCCR 1 cut(s) 568
Eam1104I CTCTTC 2 cut(s) 987, 1527
EarI CTCTTC 2 cut(s) 987, 1527
Ecl136II GAGCTC 1 cut(s) 368
Eco130I CCWWGG 2 cut(s) 73, 477
Eco147I AGGCCT 1 cut(s) 871
Eco24I GRGCYC 2 cut(s) 370, 1019
Eco31I GGTCTC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 368
Eco57I CTGAAG 4 cut(s) 642, 978, 1245, 1490
Eco88I CYCGRG 2 cut(s) 37, 301
EcoICRI GAGCTC 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 408
EcoRI GAATTC 2 cut(s) 85, 1550
EcoRII CCWGG 1 cut(s) 1559
EcoT14I CCWWGG 2 cut(s) 73, 477
EcoT38I GRGCYC 2 cut(s) 370, 1019
ErhI CCWWGG 2 cut(s) 73, 477
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 1 cut(s) 1475
FokI GGATG 4 cut(s) 596, 935, 983, 1013
FriOI GRGCYC 2 cut(s) 370, 1019
Fsp4HI GCNGC 1 cut(s) 1475
FspBI CTAG 2 cut(s) 878, 1050
GluI GCNGC 1 cut(s) 1475
GsuI CTGGAG 2 cut(s) 595, 1224
HaeIII GGCC 6 cut(s) 72, 165, 570, 871, 1167, 1395
HapII CCGG 1 cut(s) 490
HincII GTYRAC 1 cut(s) 1514
HindII GTYRAC 1 cut(s) 1514
HindIII AAGCTT 7 cut(s) 216, 443, 1136, 1247, 1274, 1283, 1398
HpaII CCGG 1 cut(s) 490
HphI GGTGA 3 cut(s) 149, 788, 1553
Hpy166II GTNNAC 3 cut(s) 175, 1357, 1514
Hpy188III TCNNGA 5 cut(s) 37, 406, 490, 612, 1203
Hpy8I GTNNAC 3 cut(s) 175, 1357, 1514
HpyAV CCTTC 4 cut(s) 128, 310, 916, 1030
HpyCH4III ACNGT 3 cut(s) 1199, 1268, 1333
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 6 cut(s) 339, 374, 435, 1128, 1282, 1371
HpySE526I ACGT 1 cut(s) 123
Kpn2I TCCGGA 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 6 cut(s) 419, 486, 500, 522, 603, 711
LguI GCTCTTC 1 cut(s) 987
LmnI GCTCC 4 cut(s) 4, 1022, 1309, 1370
Lsp1109I GCAGC 1 cut(s) 1486
LweI GCATC 3 cut(s) 304, 898, 1596
MaeI CTAG 2 cut(s) 878, 1050
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 6 cut(s) 59, 284, 646, 1003, 1333, 1409
MalI GATC 6 cut(s) 421, 488, 502, 524, 605, 713
MbiI CCGCTC 1 cut(s) 1146
MboI GATC 6 cut(s) 419, 486, 500, 522, 603, 711
MboII GAAGA 8 cut(s) 528, 648, 1001, 1004, 1114, 1222, 1238, 1544
MfeI CAATTG 1 cut(s) 625
MhlI GDGCHC 4 cut(s) 370, 1019, 1367, 1468
MlsI TGGCCA 1 cut(s) 570
MluNI TGGCCA 1 cut(s) 570
MlyI GAGTC 4 cut(s) 316, 365, 662, 1214
Mox20I TGGCCA 1 cut(s) 570
MroI TCCGGA 1 cut(s) 489
MroXI GAANNNNTTC 2 cut(s) 640, 1139
MscI TGGCCA 1 cut(s) 570
MseI TTAA 3 cut(s) 512, 1242, 1376
MslI CAYNNNNRTG 1 cut(s) 959
Msp20I TGGCCA 1 cut(s) 570
MspI CCGG 1 cut(s) 490
MspR9I CCNGG 1 cut(s) 1561
MunI CAATTG 1 cut(s) 625
MvaI CCWGG 1 cut(s) 1561
MvnI CGCG 1 cut(s) 1587
MwoI GCNNNNNNNGC 6 cut(s) 339, 374, 435, 1128, 1282, 1371
NcoI CCATGG 2 cut(s) 73, 477
NdeII GATC 6 cut(s) 419, 486, 500, 522, 603, 711
NlaIV GGNNCC 1 cut(s) 1018
NmuCI GTSAC 4 cut(s) 59, 284, 1333, 1409
NspI RCATGY 2 cut(s) 155, 1063
OliI CACNNNNGTG 1 cut(s) 959
PaeI GCATGC 1 cut(s) 155
PaeR7I CTCGAG 2 cut(s) 37, 301
PceI AGGCCT 1 cut(s) 871
PciI ACATGT 1 cut(s) 1059
PciSI GCTCTTC 1 cut(s) 987
PdmI GAANNNNTTC 2 cut(s) 640, 1139
PfeI GAWTC 9 cut(s) 263, 557, 706, 785, 887, 1046, 1076, 1094, 1436
PflMI CCANNNNNTGG 1 cut(s) 1402
PkrI GCNGC 1 cut(s) 1476
PleI GAGTC 4 cut(s) 316, 364, 661, 1214
PpsI GAGTC 4 cut(s) 316, 364, 661, 1214
PpuMI RGGWCCY 1 cut(s) 408
PscI ACATGT 1 cut(s) 1059
Psp124BI GAGCTC 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 1559
PspGI CCWGG 1 cut(s) 1559
PspN4I GGNNCC 1 cut(s) 1018
PspPI GGNCC 1 cut(s) 408
PspPPI RGGWCCY 1 cut(s) 408
PspXI VCTCGAGB 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 650
RsaI GTAC 4 cut(s) 518, 1072, 1265, 1294
RsaNI GTAC 4 cut(s) 517, 1071, 1264, 1293
RseI CAYNNNNRTG 1 cut(s) 959
SacI GAGCTC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 987
SaqAI TTAA 3 cut(s) 512, 1242, 1376
SatI GCNGC 1 cut(s) 1475
Sau3AI GATC 6 cut(s) 419, 486, 500, 522, 603, 711
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 4 cut(s) 316, 365, 662, 1214
ScrFI CCNGG 1 cut(s) 1561
SduI GDGCHC 4 cut(s) 370, 1019, 1367, 1468
SfaNI GCATC 3 cut(s) 304, 898, 1596
Sfr274I CTCGAG 2 cut(s) 37, 301
SinI GGWCC 1 cut(s) 408
SlaI CTCGAG 2 cut(s) 37, 301
SmiMI CAYNNNNRTG 1 cut(s) 959
SmlI CTYRAG 3 cut(s) 37, 301, 1526
SmoI CTYRAG 3 cut(s) 37, 301, 1526
SphI GCATGC 1 cut(s) 155
SseBI AGGCCT 1 cut(s) 871
SsiI CCGC 2 cut(s) 342, 1144
SspI AATATT 1 cut(s) 765
SspMI CTAG 2 cut(s) 878, 1050
SstI GAGCTC 1 cut(s) 370
StuI AGGCCT 1 cut(s) 871
StyD4I CCNGG 1 cut(s) 1559
StyI CCWWGG 2 cut(s) 73, 477
TaaI ACNGT 3 cut(s) 1199, 1268, 1333
TaiI ACGT 1 cut(s) 126
TaqI TCGA 3 cut(s) 38, 302, 634
TatI WGTACW 2 cut(s) 1263, 1292
TfiI GAWTC 9 cut(s) 263, 557, 706, 785, 887, 1046, 1076, 1094, 1436
Tru1I TTAA 3 cut(s) 512, 1242, 1376
Tru9I TTAA 3 cut(s) 512, 1242, 1376
TscAI CASTG 4 cut(s) 332, 475, 961, 1473
TseFI GTSAC 4 cut(s) 59, 284, 1333, 1409
TseI GCWGC 1 cut(s) 1474
Tsp45I GTSAC 4 cut(s) 59, 284, 1333, 1409
TspDTI ATGAA 8 cut(s) 284, 566, 570, 1037, 1049, 1169, 1412, 1590
TspRI CASTG 4 cut(s) 332, 475, 961, 1473
Van91I CCANNNNNTGG 1 cut(s) 1402
VpaK11BI GGWCC 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 7 cut(s) 85, 194, 387, 563, 770, 1233, 1550
XceI RCATGY 2 cut(s) 155, 1063
XcmI CCANNNNNNNNNTGG 1 cut(s) 1403
XhoI CTCGAG 2 cut(s) 37, 301
XmnI GAANNNNTTC 2 cut(s) 640, 1139
XspI CTAG 2 cut(s) 878, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.