Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0014778

Physical Location & Seq

Genomic Coordinates Reverse (-)

3412992 .. 3413573

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAATGTGGATATTATCGAGGAAGTAGAATTGGATGTAGCTGCATTCGGATCAAAGAAGTTGGGTTTGAACAATAAATCCATGTTATATGCTACTGAATCTGAAGTCTTTGCTGATTCCCAGAAGAAAAGAGAGCACAAGTGCAGGATTTGCAACAAGGTTTTCAGGACGTATCAGGCACTTGGAGCTCACCAAAGAGTTCACAAATCAACCAGCAATAGTTCTGCCGTAAAAAATGAGGATCATGAAGATAGAATTCCGATTGCCAAGCTTGAATGCAGTGATAATTCAGCAGCAGAAGGGGAGACGGAAAGAGTAATTGAGAATAAGGGTCACAAGTGCTCCATCTGCTTGAAGGTGTTTGCAACAGGCCAAGCCTTGGGTGGCCACAAGAGAGTTCATTTCGACAAAGACCCCGAGAGAGGTGCACAAGAGTCCAGAGTGCTGAAGCAGCAGATATCCAACATCTGCGATGCATTTGATCTTAGCCGTCCAGTCGAAAATGGTGATGTTGAATTCAAGTCCTGGTGGCTTGGAAATGAACATAAGCAAGAGATGTTGATGGGACTGATGCCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

194

Amino Acids

21.76

Weight (kDa)

6.45

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	46 - 70	1.9e-08	C2H2-type zinc finger
zf-C2H2_6	PF13912	112 - 134	8.2e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47240
malus_domestica	MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica	Prupe.3G257500_v2.0.a1
pyrus_communis	pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis	RchiOBHm_Chr2g0166281
rosa_laevigata	RLG00000021603
rosa_multiflora	Rmu_sc0024214.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085020
rosa_rugosa	Rorug02G0521800
rosa_samantha	Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana	Rw2G049000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AclWI	GGATC	2 cut(s)	58, 249
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	255, 515
AcuI	CTGAAG	2 cut(s)	123, 467
AfiI	CCNNNNNNNGG	2 cut(s)	379, 422
AgsI	TTSAA	5 cut(s)	70, 275, 355, 515, 520
AjnI	CCWGG	1 cut(s)	524
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	3 cut(s)	41, 188, 271
AluI	AGCT	3 cut(s)	41, 188, 271
Alw21I	GWGCWC	4 cut(s)	138, 190, 344, 430
Alw26I	GTCTC	1 cut(s)	299
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	58, 249
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	370, 385
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	3 cut(s)	41, 293, 451
ApoI	RAATTY	2 cut(s)	255, 515
AsuHPI	GGTGA	2 cut(s)	182, 518
AvaI	CYCGRG	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	430
BalI	TGGCCA	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	4 cut(s)	138, 190, 344, 430
BbvI	GCAGC	3 cut(s)	28, 305, 463
BccI	CCATC	2 cut(s)	353, 556
BceAI	ACGGC	2 cut(s)	212, 474
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	42, 294, 452
BlsI	GCNGC	3 cut(s)	43, 295, 453
Bme1390I	CCNGG	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	416
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	463, 561
BsaJI	CCNNGG	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 422
Bse1I	ACTGG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	2 cut(s)	379, 422
BseNI	ACTGG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	3 cut(s)	28, 305, 463
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	372, 387
BsiHKAI	GWGCWC	4 cut(s)	138, 190, 344, 430
BsiHKCI	CYCGRG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	379, 422
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsmI	GAATGC	2 cut(s)	44, 281
BsnI	GGCC	2 cut(s)	372, 387
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	4 cut(s)	138, 190, 344, 430
Bsp143I	GATC	3 cut(s)	50, 241, 481
BspANI	GGCC	2 cut(s)	372, 387
BspHI	TCATGA	1 cut(s)	244
BspPI	GGATC	2 cut(s)	58, 249
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	50, 241, 481
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	526
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	3 cut(s)	53, 244, 484
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	50, 241, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 185, 348, 451
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	524
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	3 cut(s)	28, 305, 463
BsuRI	GGCC	2 cut(s)	372, 387
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
CciI	TCATGA	1 cut(s)	244
CviAII	CATG	2 cut(s)	82, 245
CviJI	RGCY	8 cut(s)	41, 188, 271, 372, 377, 387, 489, 532
CviKI_1	RGCY	8 cut(s)	41, 188, 271, 372, 377, 387, 489, 532
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	3 cut(s)	52, 243, 483
DpnII	GATC	3 cut(s)	50, 241, 481
EaeI	YGGCCR	1 cut(s)	385
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	123, 467
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	188
EcoRI	GAATTC	2 cut(s)	255, 515
EcoRII	CCWGG	1 cut(s)	524
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	378
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	2 cut(s)	85, 248
FaiI	YATR	5 cut(s)	83, 88, 90, 246, 546
FatI	CATG	2 cut(s)	81, 244
Fnu4HI	GCNGC	3 cut(s)	42, 294, 452
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	42, 294, 452
GluI	GCNGC	3 cut(s)	42, 294, 452
HaeIII	GGCC	2 cut(s)	372, 387
Hin1II	CATG	2 cut(s)	85, 248
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	3 cut(s)	98, 116, 434
HphI	GGTGA	2 cut(s)	182, 518
Hpy166II	GTNNAC	2 cut(s)	202, 428
Hpy188I	TCNGA	3 cut(s)	50, 103, 261
Hpy188III	TCNNGA	3 cut(s)	166, 245, 438
Hpy8I	GTNNAC	2 cut(s)	202, 428
HpyAV	CCTTC	2 cut(s)	293, 349
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	7 cut(s)	44, 144, 153, 279, 365, 428, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 185, 348, 451
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	85, 248
Kzo9I	GATC	3 cut(s)	50, 241, 481
LmnI	GCTCC	2 cut(s)	185, 347
Lsp1109I	GCAGC	3 cut(s)	28, 305, 463
LweI	GCATC	2 cut(s)	463, 561
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	3 cut(s)	52, 243, 483
MboI	GATC	3 cut(s)	50, 241, 481
MboII	GAAGA	2 cut(s)	136, 260
MhlI	GDGCHC	4 cut(s)	138, 190, 344, 430
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	5 cut(s)	29, 255, 286, 318, 515
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	3 cut(s)	13, 232, 416
Mox20I	TGGCCA	1 cut(s)	387
Mph1103I	ATGCAT	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	526
Mva1269I	GAATGC	2 cut(s)	44, 281
MvaI	CCWGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	4 cut(s)	150, 185, 348, 451
NdeII	GATC	3 cut(s)	50, 241, 481
NlaIII	CATG	2 cut(s)	85, 248
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	478
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	2 cut(s)	44, 281
PfeI	GAWTC	2 cut(s)	98, 116
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	43, 295, 453
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	190
SatI	GCNGC	3 cut(s)	42, 294, 452
Sau3AI	GATC	3 cut(s)	50, 241, 481
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	4 cut(s)	138, 190, 344, 430
SetI	ASST	7 cut(s)	43, 162, 173, 190, 273, 360, 427
SfaNI	GCATC	2 cut(s)	463, 561
Sse9I	AATT	5 cut(s)	29, 255, 286, 318, 515
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	3 cut(s)	18, 405, 498
TasI	AATT	5 cut(s)	29, 255, 286, 318, 515
TfiI	GAWTC	2 cut(s)	98, 116
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	3 cut(s)	41, 293, 451
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	17, 261, 389, 555
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	426
XapI	RAATTY	2 cut(s)	255, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.