Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0014778

Physical Location & Seq

Genomic Coordinates Reverse (-)

3413923 .. 3415292

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCGAGTGATCATGGTGGTAGCAATAGCAGAAGACGGAGAGGTTTTGATTAGGGACCCATATCTTGTTTTTGCCCACAAATTCTACAAAACCCAAAAGTGCTTCTTCTCCAGCACTTTTGAAAAAAGCAAGAAAGCTTCGTCTCTGATCTGGGTTTTCAGCATCCTCTGTTTCTTGAGCTCCTTCAGCAATTTTTTCCTCGAATGCGGTGGAAAGATTCAAACTTTCTCGGAAAATTGGATTCCTTCTCGGTTCTGGGATCTGGGTTCGTTTGCTTTTCTGGTTAAGATGATGGAGCATGTGTGCAAGCTCTGCAAAAAGAGTTTTGTGAGCGGCAGAGTCTTGGGAGGTCACATGAGGTGCCATGGAGCAAGAAAATCTGCTAAAACAGAGAAAAAGATCGAAATGTGCAGGGTGGATTTTGAGGTTGAAGACATCTGTTGGATCGATCACGCTGGTTATGGATTACGAAGGAACCCGAAAAAGTCCTGGAAGTTTTCAGGGGACTCGAAGTTTAAAGCTTCTGCAGGGGAAGAAAATGAGACCGTCTGCAGGTGCAGGGTTTGTGGCAAAGGGTTTGATTCGATGAGGGCGATGTTCGGGCACATGAGGCATCACTCGGGGAGGGAGAGGAAGGAAACGCGGTCTTGCGAAGTTTGCTGTAAAGGGTTTGAATCGTTGAGAGCTTTAGCTACTCATAGCAGATGCCACTCGGAAAGGATTAGGGGAACTGATAGATTGGAGACTGTTTCTTCAAGCAAGATGCTTTCTGTGGATTCCTGTCAGTACAGCAGTGAGACAATGGGGCTGATTCGGAGGAAAAGATCGAAAAGATTGAGGTACAAGAATACTAATTCAAGCTGTTCTTTTTCTAGTTTTAGTGTGAATGAATCTAAGTATGTTACTGAATTCGGGGAAGAAGTAGTAGAGGGGGCTATTTGTTTGATCGATCATATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

321

Amino Acids

36.78

Weight (kDa)

9.27

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	100 - 122	5.6e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47240
malus_domestica	MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica	Prupe.3G257500_v2.0.a1
pyrus_communis	pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis	RchiOBHm_Chr2g0166281
rosa_laevigata	RLG00000021603
rosa_multiflora	Rmu_sc0024214.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085020
rosa_rugosa	Rorug02G0521800
rosa_samantha	Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana	Rw2G049000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	543
Acc36I	ACCTGC	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	360
AccBSI	CCGCTC	1 cut(s)	333
AccII	CGCG	1 cut(s)	643
AciI	CCGC	3 cut(s)	207, 333, 643
AclWI	GGATC	2 cut(s)	267, 452
AcsI	RAATTY	2 cut(s)	80, 908
AcuI	CTGAAG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	788, 842
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	6 cut(s)	122, 221, 431, 674, 756, 858
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	7 cut(s)	137, 180, 310, 521, 686, 692, 861
AluI	AGCT	7 cut(s)	137, 180, 310, 521, 686, 692, 861
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	4 cut(s)	147, 536, 737, 791
AlwI	GGATC	2 cut(s)	267, 452
Ama87I	CYCGRG	1 cut(s)	619
ApoI	RAATTY	2 cut(s)	80, 908
AspS9I	GGNCC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	619
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	606
BanI	GGYRCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	2 cut(s)	39, 438
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	490
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	4 cut(s)	147, 536, 737, 791
BfaI	CTAG	1 cut(s)	873
BfmI	CTRYAG	2 cut(s)	525, 550
BfuAI	ACCTGC	1 cut(s)	543
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	490
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	56, 57, 362, 476
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	4 cut(s)	171, 622, 695, 753
BpiI	GAAGAC	2 cut(s)	39, 438
BpmI	CTGGAG	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	196
Bsa29I	ATCGAT	2 cut(s)	447, 948
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	490
BseCI	ATCGAT	2 cut(s)	447, 948
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseSI	GKGCMC	1 cut(s)	606
BsgI	GTGCAG	2 cut(s)	430, 577
Bsh1236I	CGCG	1 cut(s)	643
BshNI	GGYRCC	1 cut(s)	360
BshVI	ATCGAT	2 cut(s)	447, 948
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	619
BslFI	GGGAC	2 cut(s)	68, 518
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	4 cut(s)	147, 536, 737, 791
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	2 cut(s)	68, 518
BsmI	GAATGC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	619
Bsp1286I	GDGCHC	2 cut(s)	182, 606
Bsp143I	GATC	9 cut(s)	9, 147, 259, 399, 444, 448, 824, 945, 949
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	3 cut(s)	207, 333, 643
BspDI	ATCGAT	2 cut(s)	447, 948
BspFNI	CGCG	1 cut(s)	643
BspLI	GGNNCC	4 cut(s)	56, 57, 362, 476
BspMAI	CTGCAG	2 cut(s)	529, 554
BspMI	ACCTGC	1 cut(s)	543
BspPI	GGATC	2 cut(s)	267, 452
BspT107I	GGYRCC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	9 cut(s)	9, 147, 259, 399, 444, 448, 824, 945, 949
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	547, 748
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	894
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	643
BstKTI	GATC	9 cut(s)	12, 150, 262, 402, 447, 451, 827, 948, 952
BstMAI	GTCTC	4 cut(s)	147, 536, 737, 791
BstMBI	GATC	9 cut(s)	9, 147, 259, 399, 444, 448, 824, 945, 949
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 312, 610, 657
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	2 cut(s)	525, 550
BstSLI	GKGCMC	1 cut(s)	606
BstUI	CGCG	1 cut(s)	643
BstV2I	GAAGAC	2 cut(s)	39, 438
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	2 cut(s)	447, 948
BsuTUI	ATCGAT	2 cut(s)	447, 948
BtgI	CCRYGG	1 cut(s)	364
BtgZI	GCGATG	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	799
BtsIMutI	CAGTG	1 cut(s)	799
BveI	ACCTGC	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	2 cut(s)	447, 948
Csp6I	GTAC	2 cut(s)	787, 841
CviAII	CATG	5 cut(s)	13, 299, 355, 365, 607
CviJI	RGCY	9 cut(s)	137, 180, 310, 521, 686, 692, 808, 861, 935
CviKI_1	RGCY	9 cut(s)	137, 180, 310, 521, 686, 692, 808, 861, 935
CviQI	GTAC	2 cut(s)	787, 841
DdeI	CTNAG	1 cut(s)	894
DpnI	GATC	9 cut(s)	11, 149, 261, 401, 446, 450, 826, 947, 951
DpnII	GATC	9 cut(s)	9, 147, 259, 399, 444, 448, 824, 945, 949
DraI	TTTAAA	1 cut(s)	517
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	5 cut(s)	16, 302, 358, 368, 610
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 850, 882
FaqI	GGGAC	2 cut(s)	68, 518
FatI	CATG	5 cut(s)	12, 298, 354, 364, 606
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	873
GluI	GCNGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	94
Hin1II	CATG	5 cut(s)	16, 302, 358, 368, 610
HindIII	AAGCTT	2 cut(s)	135, 519
HinfI	GANTC	9 cut(s)	217, 241, 339, 506, 581, 674, 776, 811, 890
Hpy188I	TCNGA	4 cut(s)	147, 232, 715, 816
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	4 cut(s)	193, 255, 465, 628
HpyCH4III	ACNGT	2 cut(s)	547, 748
HpyCH4V	TGCA	6 cut(s)	306, 315, 411, 527, 552, 558
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 312, 610, 657
HpyF3I	CTNAG	1 cut(s)	894
Hsp92II	CATG	5 cut(s)	16, 302, 358, 368, 610
KflI	GGGWCCC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	9 cut(s)	9, 147, 259, 399, 444, 448, 824, 945, 949
LmnI	GCTCC	3 cut(s)	185, 295, 368
LweI	GCATC	4 cut(s)	171, 622, 695, 753
MaeI	CTAG	1 cut(s)	873
MaeIII	GTNAC	2 cut(s)	350, 901
MalI	GATC	9 cut(s)	11, 149, 261, 401, 446, 450, 826, 947, 951
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	9 cut(s)	9, 147, 259, 399, 444, 448, 824, 945, 949
MboII	GAAGA	6 cut(s)	44, 97, 443, 545, 744, 929
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	182, 606
MluCI	AATT	5 cut(s)	80, 190, 235, 853, 908
MlyI	GAGTC	2 cut(s)	348, 500
MmeI	TCCRAC	1 cut(s)	422
MseI	TTAA	2 cut(s)	285, 516
MspR9I	CCNGG	1 cut(s)	490
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	4 cut(s)	186, 312, 610, 657
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	9 cut(s)	9, 147, 259, 399, 444, 448, 824, 945, 949
NlaIII	CATG	5 cut(s)	16, 302, 358, 368, 610
NlaIV	GGNNCC	4 cut(s)	56, 57, 362, 476
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	302
PaqCI	CACCTGC	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	7 cut(s)	217, 241, 581, 674, 776, 811, 890
PfoI	TCCNGGA	1 cut(s)	488
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	2 cut(s)	347, 500
PpsI	GAGTC	2 cut(s)	347, 500
PpuMI	RGGWCCY	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	4 cut(s)	56, 57, 362, 476
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PstI	CTGCAG	2 cut(s)	529, 554
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	2 cut(s)	788, 842
RsaNI	GTAC	2 cut(s)	787, 841
SacI	GAGCTC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	285, 516
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	9 cut(s)	9, 147, 259, 399, 444, 448, 824, 945, 949
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	348, 500
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	2 cut(s)	182, 606
SfaNI	GCATC	4 cut(s)	171, 622, 695, 753
SfcI	CTRYAG	2 cut(s)	525, 550
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	5 cut(s)	80, 190, 235, 853, 908
SsiI	CCGC	3 cut(s)	207, 333, 643
SspMI	CTAG	1 cut(s)	873
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	547, 748
TaqI	TCGA	7 cut(s)	201, 402, 447, 509, 584, 827, 948
TasI	AATT	5 cut(s)	80, 190, 235, 853, 908
TatI	WGTACW	1 cut(s)	786
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	7 cut(s)	217, 241, 581, 674, 776, 811, 890
Tru1I	TTAA	2 cut(s)	285, 516
Tru9I	TTAA	2 cut(s)	285, 516
TscAI	CASTG	1 cut(s)	799
TseFI	GTSAC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	903
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	2 cut(s)	80, 908
XceI	RCATGY	1 cut(s)	302
XspI	CTAG	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.