Rroxscaffold_2G00085020

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014778
Physical Location & Seq
Reverse (-)
7445406 .. 7447016
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085020.1

Sequence Viewer

Length: 1611 bp
ATGGAGACGCTGAGAGGTGCAGGGCATGTGTGCAAGTTCTGTGGTCAGAGTTGCGTGAGCGGCAAGGTCTTGGGAGGTCACATGAGGTCTCACGCGTTCAAGAATCCGATCAAGTCAAGTAGAAAGCACAAGAAAGCCAACATGGGGTTTCAAGATGACGGCGACGGCAATGTGGGTTATGGCCTGAGATTAAACCCCAAAAGGTCCTGGAAATTTTCAGGCAAAGAAGAGGAAGAAGAGATTGTGTGCAAGGTTTGTGGTAAAGCGTTTGAGAGAAAGAACGCTCTGTTTGGTCACATGAGGCATCACTTGGTGAAGCAGAGGAATGAGGCTCAGTGGTGCAGAGATTGCGGTAAAGGGTTTGAGTCTTTGAAAGCTTTGAGCGTTCATAGGAGAGTTCATGCAAAAAGATTGAAGGGTTTTGATGAAACAGAGAGGGGTTTAACCCAGAAGCTTTGCATTGAGAGTTTGGGGTTGGTGAGGAAGAAAAGATCTGCAAGATTCAGGTACAGGATTGCTTCTCCTAGTTCTTCATTTTCTGGTTTGAATTTGAGTGAATGTAAATTTGGTCATGGGTGTGGCGTGGATATAGAAGAAGCTGCTTTTTGCTTGATGATGATCTCTAGGGGTTTAGGGAATTGGGGTCAGATTAGTTCAGTGGCTGAGTCCTCAAATAACAACTCGTTTTCTGTTGAGGTTGAGTCACCGAGTCAAAGGAAGCGAGTTAGGGACAATGAGGGTGGGGTTTTCGCTTGTGATGGTGATGCTGGGTCTTTACAGATCAAAAGGGCCAAGGTGGAGGTGTCAGCTGATTGTGTTTTGGATTGTGAGAATGGCTCTGGTGCGAAGGAAGTGTCTGAGTTTGGGGAACTTATTGATTCTGAGTTTGTAGGTGCTGAGATGCCTAAATCTGGGTTTGTGTTATATGGTATTGAAGAATTGGGTGTGGAAACTAGTGAGGAGGAAGTAGAAGTGGGTTTATCAGGTTTGGGGTCCATGAAGTTTGGTTTGAGCAAGAAGGCTGTGCTTAAGGCTTGTGATTCTGTGAACAAAGGGTTGTATGCTACTGAATCTGAAACCTTCGCTGATTCTGAGAAGAAAAGAGAACACAAGTGCAGGATATGCAGAAGGGTTTTCGGCACCCATCAGGCACTTGGAGGCCACCAGAGAGTTCATAAGAGAAGTTACAAAAGCTTAGTGCTGAAGAATGAGGATGGTGAAGATAGAACTCAGATTGGCACACTTTGTGAGACTGAGGATAATTGCAATCCTGCCAAGCTTGAAAGTAGTGATAACTCAGTGGAGCAGGAGATAGAAATTGTGACTGTGGGAGGTTCTGAGAGGAAGGGTCACGTGTGTGGTATCTGCTTGAAGGTTTTTGCATCAGGCCAAGCTTTGGGTGGTCACAAGAGGTCTCATTATGTCAAAGACTCGGAGATAGCCACAGATAAGACCAGAGTAATGAAGCAACAGATTTCTGATATCTGTGATGCATTTGAAGTCAGTCACCAATTGAAACTTCAGGAGGAGAATGATGGTGTTGAATTCAAGCCATGGTGGGCTGGAACTGAACAAAAGCATGAGCTGCTGGTGGGTTTGATCCCCAACTAA

Protein Analysis

536

Amino Acids

59.21

Weight (kDa)

8.24

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 451 - 474 2.1e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47240
malus_domestica MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica Prupe.3G257500_v2.0.a1
pyrus_communis pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis RchiOBHm_Chr2g0166281
rosa_laevigata RLG00000021603
rosa_multiflora Rmu_sc0024214.1_g000001
rosa_roxburghii Rroxscaffold_2G00085020
rosa_rugosa Rorug02G0521800
rosa_samantha Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana Rw2G049000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1139
AccB7I CCANNNNNTGG 1 cut(s) 1396
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 60, 351
AclWI GGATC 1 cut(s) 1594
AcsI RAATTY 4 cut(s) 212, 547, 563, 1544
AcuI CTGAAG 2 cut(s) 1223, 1505
AcvI CACGTG 1 cut(s) 1354
AdeI CACNNNGTG 2 cut(s) 313, 1247
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 3 cut(s) 144, 911, 1396
AflII CTTAAG 1 cut(s) 1028
AflIII ACRYGT 2 cut(s) 93, 1353
AhlI ACTAGT 1 cut(s) 953
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 4 cut(s) 549, 581, 1503, 1535
AleI CACNNNNGTG 1 cut(s) 1356
AluBI AGCT 8 cut(s) 377, 454, 599, 809, 1194, 1279, 1394, 1585
AluI AGCT 8 cut(s) 377, 454, 599, 809, 1194, 1279, 1394, 1585
Alw26I GTCTC 3 cut(s) 93, 1244, 1419
AlwI GGATC 1 cut(s) 1594
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 4 cut(s) 181, 789, 1159, 1387
ApeKI GCWGC 2 cut(s) 599, 1585
ApoI RAATTY 4 cut(s) 212, 547, 563, 1544
ArsI GACNNNNNNTTYG 2 cut(s) 839, 871
AspS9I GGNCC 3 cut(s) 204, 789, 993
AsuHPI GGTGA 6 cut(s) 325, 490, 696, 773, 1229, 1499
AvaII GGWCC 2 cut(s) 204, 993
BanI GGYRCC 1 cut(s) 1139
BbrPI CACGTG 1 cut(s) 1354
BbvI GCAGC 2 cut(s) 586, 1572
BccI CCATC 4 cut(s) 752, 1152, 1208, 1529
BceAI ACGGC 2 cut(s) 175, 181
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 93, 1244, 1419
BcuI ACTAGT 1 cut(s) 953
BfaI CTAG 3 cut(s) 525, 624, 954
BfrI CTTAAG 1 cut(s) 1028
BglII AGATCT 1 cut(s) 491
BisI GCNGC 3 cut(s) 61, 600, 1586
BlsI GCNGC 3 cut(s) 62, 601, 1587
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 204, 993
BmgT120I GGNCC 3 cut(s) 204, 789, 993
BmiI GGNNCC 2 cut(s) 994, 1141
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 5 cut(s) 313, 754, 891, 1391, 1480
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BsaAI YACGTR 1 cut(s) 1354
BsaBI GATNNNNATC 1 cut(s) 617
BsaI GGTCTC 2 cut(s) 93, 1419
BsaJI CCNNGG 2 cut(s) 792, 1553
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 911, 1396
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 792, 1553
BseGI GGATG 1 cut(s) 1219
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 3 cut(s) 144, 911, 1396
BseMI GCAATG 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 974, 1541
BseXI GCAGC 2 cut(s) 586, 1572
BseYI CCCAGC 1 cut(s) 767
BsgI GTGCAG 3 cut(s) 39, 361, 1135
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 183, 791, 1161, 1389
BshNI GGYRCC 1 cut(s) 1139
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 3 cut(s) 144, 911, 1396
BsmAI GTCTC 3 cut(s) 93, 1244, 1419
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 4 cut(s) 183, 791, 1161, 1389
Bso31I GGTCTC 2 cut(s) 93, 1419
Bsp143I GATC 5 cut(s) 108, 491, 618, 780, 1599
Bsp19I CCATGG 1 cut(s) 1553
BspACI CCGC 2 cut(s) 60, 351
BspANI GGCC 4 cut(s) 183, 791, 1161, 1389
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 994, 1141
BspPI GGATC 1 cut(s) 1594
BspT107I GGYRCC 1 cut(s) 1139
BspTI CTTAAG 1 cut(s) 1028
BspTNI GGTCTC 2 cut(s) 93, 1419
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 792, 1553
BssMI GATC 5 cut(s) 108, 491, 618, 780, 1599
BssT1I CCWWGG 2 cut(s) 792, 1553
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 1327
Bst6I CTCTTC 2 cut(s) 222, 231
BstAFI CTTAAG 1 cut(s) 1028
BstAPI GCANNNNNTGC 3 cut(s) 348, 1122, 1585
BstBAI YACGTR 1 cut(s) 1354
BstDSI CCRYGG 1 cut(s) 1553
BstF5I GGATG 1 cut(s) 1219
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 5 cut(s) 111, 494, 621, 783, 1602
BstMAI GTCTC 3 cut(s) 93, 1244, 1419
BstMBI GATC 5 cut(s) 108, 491, 618, 780, 1599
BstMWI GCNNNNNNNGC 4 cut(s) 60, 348, 1122, 1585
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 586, 1572
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BsuRI GGCC 4 cut(s) 183, 791, 1161, 1389
BtgI CCRYGG 1 cut(s) 1553
BtsCI GGATG 1 cut(s) 1219
BtsIMutI CAGTG 3 cut(s) 341, 663, 1305
CaiI CAGNNNCTG 1 cut(s) 662
Cfr13I GGNCC 3 cut(s) 204, 789, 993
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 508
CspCI CAANNNNNGTGG 6 cut(s) 22, 57, 238, 273, 721, 756
CviAII CATG 9 cut(s) 26, 82, 142, 298, 401, 572, 997, 1554, 1580
CviQI GTAC 1 cut(s) 508
DpnI GATC 5 cut(s) 110, 493, 620, 782, 1601
DpnII GATC 5 cut(s) 108, 491, 618, 780, 1599
DraIII CACNNNGTG 2 cut(s) 313, 1247
Eam1104I CTCTTC 2 cut(s) 222, 231
EarI CTCTTC 2 cut(s) 222, 231
Eco130I CCWWGG 2 cut(s) 792, 1553
Eco31I GGTCTC 2 cut(s) 93, 1419
Eco32I GATATC 1 cut(s) 1483
Eco47I GGWCC 2 cut(s) 204, 993
Eco57I CTGAAG 2 cut(s) 1223, 1505
Eco72I CACGTG 1 cut(s) 1354
EcoO109I RGGNCCY 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 1544
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 1483
EcoT14I CCWWGG 2 cut(s) 792, 1553
EcoT22I ATGCAT 1 cut(s) 1495
ErhI CCWWGG 2 cut(s) 792, 1553
FaeI CATG 9 cut(s) 29, 85, 145, 301, 404, 575, 1000, 1557, 1583
FaqI GGGAC 1 cut(s) 743
FatI CATG 9 cut(s) 25, 81, 141, 297, 400, 571, 996, 1553, 1579
Fnu4HI GCNGC 3 cut(s) 61, 600, 1586
FokI GGATG 1 cut(s) 1226
Fsp4HI GCNGC 3 cut(s) 61, 600, 1586
FspBI CTAG 3 cut(s) 525, 624, 954
GluI GCNGC 3 cut(s) 61, 600, 1586
GsaI CCCAGC 1 cut(s) 771
HaeIII GGCC 4 cut(s) 183, 791, 1161, 1389
HgaI GACGC 1 cut(s) 16
Hin1II CATG 9 cut(s) 29, 85, 145, 301, 404, 575, 1000, 1557, 1583
HindIII AAGCTT 5 cut(s) 375, 452, 1192, 1277, 1392
HphI GGTGA 6 cut(s) 325, 490, 696, 773, 1229, 1499
Hpy166II GTNNAC 1 cut(s) 1048
Hpy188III TCNNGA 3 cut(s) 100, 152, 1523
Hpy8I GTNNAC 1 cut(s) 1048
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 7 cut(s) 409, 841, 1012, 1090, 1122, 1339, 1366
HpyCH4III ACNGT 1 cut(s) 1327
HpyCH4IV ACGT 1 cut(s) 1353
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 348, 1122, 1585
HpySE526I ACGT 1 cut(s) 1353
Hsp92II CATG 9 cut(s) 29, 85, 145, 301, 404, 575, 1000, 1557, 1583
Kzo9I GATC 5 cut(s) 108, 491, 618, 780, 1599
LmnI GCTCC 1 cut(s) 1303
Lsp1109I GCAGC 2 cut(s) 586, 1572
LweI GCATC 5 cut(s) 313, 754, 891, 1391, 1480
MaeI CTAG 3 cut(s) 525, 624, 954
MaeII ACGT 1 cut(s) 1353
MaeIII GTNAC 8 cut(s) 77, 293, 702, 1184, 1321, 1349, 1403, 1505
MalI GATC 5 cut(s) 110, 493, 620, 782, 1601
MbiI CCGCTC 1 cut(s) 60
MboI GATC 5 cut(s) 108, 491, 618, 780, 1599
MfeI CAATTG 1 cut(s) 1511
MflI RGATCY 1 cut(s) 491
MluCI AATT 9 cut(s) 212, 547, 563, 637, 938, 1261, 1317, 1511, 1544
MluI ACGCGT 1 cut(s) 93
MlyI GAGTC 5 cut(s) 374, 674, 710, 718, 1424
Mph1103I ATGCAT 1 cut(s) 1495
MseI TTAA 3 cut(s) 191, 443, 1029
MslI CAYNNNNRTG 2 cut(s) 576, 1356
MspA1I CMGCKG 1 cut(s) 809
MspCI CTTAAG 1 cut(s) 1028
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 1511
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 60, 348, 1122, 1585
NcoI CCATGG 1 cut(s) 1553
NdeII GATC 5 cut(s) 108, 491, 618, 780, 1599
NlaIII CATG 9 cut(s) 29, 85, 145, 301, 404, 575, 1000, 1557, 1583
NlaIV GGNNCC 2 cut(s) 994, 1141
NmuCI GTSAC 7 cut(s) 77, 293, 702, 1321, 1349, 1403, 1505
NsiI ATGCAT 1 cut(s) 1495
NspI RCATGY 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 1356
PfeI GAWTC 6 cut(s) 103, 501, 878, 1040, 1070, 1088
PflMI CCANNNNNTGG 1 cut(s) 1396
PfoI TCCNGGA 1 cut(s) 206
PkrI GCNGC 3 cut(s) 62, 601, 1587
PleI GAGTC 5 cut(s) 373, 673, 709, 717, 1424
PmaCI CACGTG 1 cut(s) 1354
PmlI CACGTG 1 cut(s) 1354
PpsI GAGTC 5 cut(s) 373, 673, 709, 717, 1424
Ppu21I YACGTR 1 cut(s) 1354
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 206
PspCI CACGTG 1 cut(s) 1354
PspFI CCCAGC 1 cut(s) 767
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 994, 1141
PspPI GGNCC 3 cut(s) 204, 789, 993
PspPPI RGGWCCY 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 2 cut(s) 576, 1356
SaqAI TTAA 3 cut(s) 191, 443, 1029
SatI GCNGC 3 cut(s) 61, 600, 1586
Sau3AI GATC 5 cut(s) 108, 491, 618, 780, 1599
Sau96I GGNCC 3 cut(s) 204, 789, 993
SchI GAGTC 5 cut(s) 374, 674, 710, 718, 1424
ScrFI CCNGG 1 cut(s) 208
SfaNI GCATC 5 cut(s) 313, 754, 891, 1391, 1480
SinI GGWCC 2 cut(s) 204, 993
SmiMI CAYNNNNRTG 2 cut(s) 576, 1356
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
SpeI ACTAGT 1 cut(s) 953
Sse9I AATT 9 cut(s) 212, 547, 563, 637, 938, 1261, 1317, 1511, 1544
SsiI CCGC 2 cut(s) 60, 351
SspMI CTAG 3 cut(s) 525, 624, 954
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 792, 1553
TaaI ACNGT 1 cut(s) 1327
TaiI ACGT 1 cut(s) 1356
TasI AATT 9 cut(s) 212, 547, 563, 637, 938, 1261, 1317, 1511, 1544
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 6 cut(s) 103, 501, 878, 1040, 1070, 1088
Tru1I TTAA 3 cut(s) 191, 443, 1029
Tru9I TTAA 3 cut(s) 191, 443, 1029
TscAI CASTG 3 cut(s) 341, 663, 1305
TseFI GTSAC 7 cut(s) 77, 293, 702, 1321, 1349, 1403, 1505
TseI GCWGC 2 cut(s) 599, 1585
Tsp45I GTSAC 7 cut(s) 77, 293, 702, 1321, 1349, 1403, 1505
TspDTI ATGAA 7 cut(s) 377, 389, 441, 522, 1013, 1163, 1478
TspRI CASTG 3 cut(s) 341, 663, 1305
Van91I CCANNNNNTGG 1 cut(s) 1396
Vha464I CTTAAG 1 cut(s) 1028
VpaK11BI GGWCC 2 cut(s) 204, 993
XapI RAATTY 4 cut(s) 212, 547, 563, 1544
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 2 cut(s) 1151, 1397
XspI CTAG 3 cut(s) 525, 624, 954
Zsp2I ATGCAT 1 cut(s) 1495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.