MD00G1156100.v1.1

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
34410633 .. 34412252
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1156100.v1.1.491

Sequence Viewer

Length: 1620 bp
ATGGAGCATGTGTGCAAGCTCTGCAAAAAGAGCTTCTTGAGCGGCAGAGTCTTGGGAGGTCACATGAGGTGCCATGGAGCAAAGAAATCGGCTAAAACTGAGAAAAATATCGAAATGTGCAGAGCACATTCTGAGGTTGAAGACGATGATCACGCTGGTTATGGATTACGAGTGAACCCGAAAAAGTCCTGGAAATTTTCAGGGCACTCGAAGTTTGAAGCTTCTGCGGGGGAAGAAAAAGAGTTCGTCTGCAGGTGCAGGGTTTGTGGCAAAGGGTTTCATTCGATGAGGGCGATGTTCGGGCACATGAGGCATCACTCAGGGAGGGAGAGGAAGGAGGCGCAGTCCTGCGAAGTTTGTGGTAAAGAGTTCGAAACGTTGAGAGCTTTAGCTACTCACAGCAGATGCCACTCGAAAAGTATTAGGGGAACTGATGGATTGGAGACTGTTTCTTCAAGCAAGAAGCTTGCTGTGGATTGCTGTCAGTACAGCAGTGAGACAATGGGGCTGATTCGGAAGAAAAGATCGAAAAGATTGAGGTACAAGATTACTAATTCAAGTTGTTCTTTTTCTAGTTTCAGTGTTAATGAATCTAAGTATGTCACTGAATTTGGGGAAGAAGTAGTAGAGGGGGCAATTTGTTTGATGATCATATCTGGTTGTGGAAGCAATTGGGATCGAATTAGTTCAGTCACTGAGTCTTCGGATAATAATTCCTTGTCTTTAGAGGTTCAATCACCAGGCCTAAAGAATTGGATCATGGGAAATAAGGGTGGTGTTTCTGTTTGTGATGATACTGTGAAATTCGTTGATTGCATTTCTGATGGTAAGAATGTCTCTGTTGACAAGAAAGTACTTGAATTTAGCGAAAATAATTCTGGGTTTGCGAATGATGAGGAAAAGAATGTCGAAACGGAAGATAGGTTCTTCAGGGGTGTAGGATATAAGAGGCCGAGACTGGATGAGGAATCTGTATTTGGGTTGTGTGATACTGAAATGGAAATGAATTTGGATATCATCAAGGAAGTAGAATTGGATGTAGCTGCATTCGGATCAATGAAGTCGGGTTTGAACAATAAACCCAAGTTTTACGCTACTGAATCTGAAGTCTTTGCTGATTCCCAGAAGAAAAGAGAGCACAAGTGCAGGCTTTGCAACAAGGTTTTCAGCACATATCAGGCACTTGGAGGCCACCAAAGAGTTCACAAATCAACCAGCACCACTTCTTTGGTAAATATTGAGGATTATGAAGATAGAATTCCGATTAACAAGTTTTCGAAGATGGAGTACAGTTGCAAGCTTGCCAAGCCTGAATGCAGTGATAATTCAGCAGCAGAAGAGAAGACGGAAAGAGTTATTGAGAATAAGGGTCACAAGTGCTCCATCTGCTTGAAGGTGTTCGCAACAGGCCAAGCGTTGGGTGGCCACAAGAGAGTTCATTTCGGCAAAGACCCCGAGACAGGTGCAGAAGAGTCCAGAGTGCTGAAGCAGCAGATTTCCGACATCTGCGATGCATTTGATCTTAGCCGTCCAATCGAAAATGGTGATGTTGATTTTAAGTCCTGGTGGCCTGGAAATGAACATAAGCAGGAGTTGTTGATGGATCTGATGCCCAACTGA

Protein Analysis

540

Amino Acids

60.5

Weight (kDa)

7.71

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 3 - 25 1.9e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 380 - 404 3.4e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 458 - 480 4.6e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014778)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 1417
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 2 cut(s) 42, 227
AclI AACGTT 1 cut(s) 377
AclWI GGATC 4 cut(s) 684, 764, 1060, 1611
AcoI YGGCCR 1 cut(s) 1423
AcsI RAATTY 6 cut(s) 194, 608, 803, 860, 1006, 1257
AcuI CTGAAG 3 cut(s) 913, 1125, 1505
AfaI GTAC 4 cut(s) 488, 542, 855, 1289
AfiI CCNNNNNNNGG 2 cut(s) 1417, 1460
AgsI TTSAA 8 cut(s) 140, 218, 456, 558, 734, 860, 1072, 1393
AjnI CCWGG 4 cut(s) 188, 739, 1562, 1570
AjuI GAANNNNNNNTTGG 2 cut(s) 960, 992
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 8 cut(s) 19, 33, 221, 386, 392, 466, 1043, 1300
AluI AGCT 8 cut(s) 19, 33, 221, 386, 392, 466, 1043, 1300
Alw21I GWGCWC 3 cut(s) 127, 1140, 1382
Alw26I GTCTC 5 cut(s) 437, 491, 841, 949, 1451
AlwI GGATC 4 cut(s) 684, 764, 1060, 1611
AlwNI CAGNNNCTG 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 1454
AoxI GGCC 6 cut(s) 742, 950, 1189, 1408, 1423, 1568
ApeKI GCWGC 3 cut(s) 1043, 1331, 1489
ApoI RAATTY 6 cut(s) 194, 608, 803, 860, 1006, 1257
Asp700I GAANNNNTTC 2 cut(s) 685, 1397
AspLEI GCGC 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 729, 1556
AsuII TTCGAA 2 cut(s) 372, 1277
AvaI CYCGRG 1 cut(s) 1454
BaeGI GKGCMC 2 cut(s) 207, 306
BalI TGGCCA 1 cut(s) 1425
BanI GGYRCC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 1271, 1303
BbsI GAAGAC 3 cut(s) 147, 693, 1349
Bbv12I GWGCWC 3 cut(s) 127, 1140, 1382
BbvI GCAGC 3 cut(s) 1030, 1343, 1501
BccI CCATC 5 cut(s) 428, 818, 1276, 1391, 1594
BceAI ACGGC 1 cut(s) 1512
BcgI CGANNNNNNTGC 4 cut(s) 69, 103, 1445, 1479
BciT130I CCWGG 4 cut(s) 190, 741, 1564, 1572
BclI TGATCA 2 cut(s) 148, 648
BcoDI GTCTC 5 cut(s) 437, 491, 841, 949, 1451
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 4 cut(s) 43, 1044, 1332, 1490
BlsI GCNGC 4 cut(s) 44, 1045, 1333, 1491
BmcAI AGTACT 1 cut(s) 855
Bme1390I CCNGG 4 cut(s) 190, 741, 1564, 1572
BmeT110I CYCGRG 1 cut(s) 1454
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 4 cut(s) 190, 741, 1564, 1572
BmsI GCATC 4 cut(s) 322, 395, 1501, 1599
BpiI GAAGAC 3 cut(s) 147, 693, 1349
Bpu14I TTCGAA 2 cut(s) 372, 1277
BpuEI CTTGAG 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 5 cut(s) 26, 329, 359, 1364, 1394
Bsc4I CCNNNNNNNGG 2 cut(s) 1417, 1460
Bse1I ACTGG 1 cut(s) 963
BseBI CCWGG 4 cut(s) 190, 741, 1564, 1572
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 2 cut(s) 967, 1042
BseLI CCNNNNNNNGG 2 cut(s) 1417, 1460
BseMII CTCAG 4 cut(s) 90, 123, 333, 687
BseNI ACTGG 1 cut(s) 963
BseSI GKGCMC 2 cut(s) 207, 306
BseXI GCAGC 3 cut(s) 1030, 1343, 1501
BsgI GTGCAG 4 cut(s) 139, 277, 1165, 1485
BshFI GGCC 6 cut(s) 744, 952, 1191, 1410, 1425, 1570
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 3 cut(s) 127, 1140, 1382
BsiHKCI CYCGRG 1 cut(s) 1454
BslI CCNNNNNNNGG 2 cut(s) 1417, 1460
BsmAI GTCTC 5 cut(s) 437, 491, 841, 949, 1451
BsmI GAATGC 2 cut(s) 1046, 1319
BsnI GGCC 6 cut(s) 744, 952, 1191, 1410, 1425, 1570
BsoBI CYCGRG 1 cut(s) 1454
Bsp119I TTCGAA 2 cut(s) 372, 1277
Bsp1286I GDGCHC 5 cut(s) 127, 207, 306, 1140, 1382
Bsp143I GATC 8 cut(s) 148, 524, 648, 676, 756, 1052, 1519, 1603
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 2 cut(s) 42, 227
BspANI GGCC 6 cut(s) 744, 952, 1191, 1410, 1425, 1570
BspCNI CTCAG 4 cut(s) 91, 124, 332, 688
BspLI GGNNCC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 4 cut(s) 684, 764, 1060, 1611
BspT104I TTCGAA 2 cut(s) 372, 1277
BspT107I GGYRCC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 963
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 8 cut(s) 148, 524, 648, 676, 756, 1052, 1519, 1603
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 4 cut(s) 190, 741, 1564, 1572
Bst4CI ACNGT 3 cut(s) 448, 799, 1292
Bst6I CTCTTC 2 cut(s) 1332, 1464
BstAPI GCANNNNNTGC 2 cut(s) 21, 1152
BstBI TTCGAA 2 cut(s) 372, 1277
BstC8I GCNNGC 5 cut(s) 17, 468, 1148, 1298, 1302
BstDEI CTNAG 6 cut(s) 99, 132, 319, 594, 696, 1523
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 967, 1042
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 8 cut(s) 151, 527, 651, 679, 759, 1055, 1522, 1606
BstMAI GTCTC 5 cut(s) 437, 491, 841, 949, 1451
BstMBI GATC 8 cut(s) 148, 524, 648, 676, 756, 1052, 1519, 1603
BstMWI GCNNNNNNNGC 8 cut(s) 21, 30, 39, 310, 1152, 1306, 1386, 1489
BstNI CCWGG 4 cut(s) 190, 741, 1564, 1572
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 4 cut(s) 188, 739, 1562, 1570
BstSFI CTRYAG 1 cut(s) 250
BstSLI GKGCMC 2 cut(s) 207, 306
BstV1I GCAGC 3 cut(s) 1030, 1343, 1501
BstV2I GAAGAC 3 cut(s) 147, 693, 1349
BstX2I RGATCY 1 cut(s) 1603
BstXI CCANNNNNNTGG 1 cut(s) 1228
BstYI RGATCY 1 cut(s) 1603
BsuRI GGCC 6 cut(s) 744, 952, 1191, 1410, 1425, 1570
BtgI CCRYGG 1 cut(s) 73
BtgZI GCGATG 2 cut(s) 308, 1524
BtsCI GGATG 2 cut(s) 967, 1042
BtsI GCAGTG 2 cut(s) 499, 1324
BtsIMutI CAGTG 5 cut(s) 499, 586, 603, 693, 1324
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 5 cut(s) 17, 468, 1148, 1298, 1302
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 1 cut(s) 343
Csp6I GTAC 4 cut(s) 487, 541, 854, 1288
CviAII CATG 5 cut(s) 8, 64, 74, 307, 760
CviQI GTAC 4 cut(s) 487, 541, 854, 1288
DdeI CTNAG 6 cut(s) 99, 132, 319, 594, 696, 1523
DpnI GATC 8 cut(s) 150, 526, 650, 678, 758, 1054, 1521, 1605
DpnII GATC 8 cut(s) 148, 524, 648, 676, 756, 1052, 1519, 1603
EaeI YGGCCR 1 cut(s) 1423
Eam1104I CTCTTC 2 cut(s) 1332, 1464
EarI CTCTTC 2 cut(s) 1332, 1464
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 744
Eco32I GATATC 1 cut(s) 1015
Eco57I CTGAAG 3 cut(s) 913, 1125, 1505
Eco88I CYCGRG 1 cut(s) 1454
EcoRI GAATTC 1 cut(s) 1257
EcoRII CCWGG 4 cut(s) 188, 739, 1562, 1570
EcoRV GATATC 1 cut(s) 1015
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 1516
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 5 cut(s) 11, 67, 77, 310, 763
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 550, 582
FatI CATG 5 cut(s) 7, 63, 73, 306, 759
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 2 cut(s) 148, 648
Fnu4HI GCNGC 4 cut(s) 43, 1044, 1332, 1490
FokI GGATG 2 cut(s) 974, 1049
Fsp4HI GCNGC 4 cut(s) 43, 1044, 1332, 1490
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 342
GluI GCNGC 4 cut(s) 43, 1044, 1332, 1490
HaeIII GGCC 6 cut(s) 744, 952, 1191, 1410, 1425, 1570
HhaI GCGC 1 cut(s) 343
Hin1II CATG 5 cut(s) 11, 67, 77, 310, 763
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HindIII AAGCTT 3 cut(s) 219, 464, 1298
HinfI GANTC 8 cut(s) 48, 511, 590, 698, 968, 1100, 1118, 1472
HphI GGTGA 2 cut(s) 729, 1556
Hpy166II GTNNAC 3 cut(s) 175, 844, 1204
Hpy188I TCNGA 9 cut(s) 133, 516, 706, 823, 1052, 1105, 1263, 1501, 1608
Hpy188III TCNNGA 2 cut(s) 37, 1476
Hpy8I GTNNAC 3 cut(s) 175, 844, 1204
HpyAV CCTTC 2 cut(s) 328, 1387
HpyCH4III ACNGT 3 cut(s) 448, 799, 1292
HpyCH4IV ACGT 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 30, 39, 310, 1152, 1306, 1386, 1489
HpyF3I CTNAG 6 cut(s) 99, 132, 319, 594, 696, 1523
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 5 cut(s) 11, 67, 77, 310, 763
HspAI GCGC 1 cut(s) 341
Ksp22I TGATCA 2 cut(s) 148, 648
Kzo9I GATC 8 cut(s) 148, 524, 648, 676, 756, 1052, 1519, 1603
LmnI GCTCC 3 cut(s) 4, 77, 1385
Lsp1109I GCAGC 3 cut(s) 1030, 1343, 1501
LweI GCATC 4 cut(s) 322, 395, 1501, 1599
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 4 cut(s) 59, 601, 691, 1370
MalI GATC 8 cut(s) 150, 526, 650, 678, 758, 1054, 1521, 1605
MbiI CCGCTC 1 cut(s) 42
MboI GATC 8 cut(s) 148, 524, 648, 676, 756, 1052, 1519, 1603
MfeI CAATTG 1 cut(s) 670
MflI RGATCY 1 cut(s) 1603
MhlI GDGCHC 5 cut(s) 127, 207, 306, 1140, 1382
MlsI TGGCCA 1 cut(s) 1425
MluNI TGGCCA 1 cut(s) 1425
MlyI GAGTC 3 cut(s) 57, 707, 1481
MmeI TCCRAC 1 cut(s) 1524
Mox20I TGGCCA 1 cut(s) 1425
Mph1103I ATGCAT 1 cut(s) 1516
MroXI GAANNNNTTC 2 cut(s) 685, 1397
MscI TGGCCA 1 cut(s) 1425
MseI TTAA 3 cut(s) 585, 1266, 1557
Msp20I TGGCCA 1 cut(s) 1425
MspR9I CCNGG 4 cut(s) 190, 741, 1564, 1572
MunI CAATTG 1 cut(s) 670
Mva1269I GAATGC 2 cut(s) 1046, 1319
MvaI CCWGG 4 cut(s) 190, 741, 1564, 1572
MwoI GCNNNNNNNGC 8 cut(s) 21, 30, 39, 310, 1152, 1306, 1386, 1489
NcoI CCATGG 1 cut(s) 73
NdeII GATC 8 cut(s) 148, 524, 648, 676, 756, 1052, 1519, 1603
NlaIII CATG 5 cut(s) 11, 67, 77, 310, 763
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 978
NmuCI GTSAC 4 cut(s) 59, 601, 691, 1370
NsiI ATGCAT 1 cut(s) 1516
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 2 cut(s) 372, 1277
PaqCI CACCTGC 1 cut(s) 243
PceI AGGCCT 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PctI GAATGC 2 cut(s) 1046, 1319
PdmI GAANNNNTTC 2 cut(s) 685, 1397
PfeI GAWTC 5 cut(s) 511, 590, 968, 1100, 1118
PflMI CCANNNNNTGG 1 cut(s) 1417
PfoI TCCNGGA 1 cut(s) 188
PkrI GCNGC 4 cut(s) 44, 1045, 1333, 1491
PleI GAGTC 3 cut(s) 56, 706, 1480
PpsI GAGTC 3 cut(s) 56, 706, 1480
Psp1406I AACGTT 1 cut(s) 377
Psp6I CCWGG 4 cut(s) 188, 739, 1562, 1570
PspGI CCWGG 4 cut(s) 188, 739, 1562, 1570
PspN4I GGNNCC 1 cut(s) 71
PstI CTGCAG 1 cut(s) 254
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 1 cut(s) 1603
RsaI GTAC 4 cut(s) 488, 542, 855, 1289
RsaNI GTAC 4 cut(s) 487, 541, 854, 1288
SaqAI TTAA 3 cut(s) 585, 1266, 1557
SatI GCNGC 4 cut(s) 43, 1044, 1332, 1490
Sau3AI GATC 8 cut(s) 148, 524, 648, 676, 756, 1052, 1519, 1603
ScaI AGTACT 1 cut(s) 855
SchI GAGTC 3 cut(s) 57, 707, 1481
ScrFI CCNGG 4 cut(s) 190, 741, 1564, 1572
SduI GDGCHC 5 cut(s) 127, 207, 306, 1140, 1382
SfaNI GCATC 4 cut(s) 322, 395, 1501, 1599
SfcI CTRYAG 1 cut(s) 250
SfuI TTCGAA 2 cut(s) 372, 1277
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SseBI AGGCCT 1 cut(s) 744
SsiI CCGC 2 cut(s) 42, 227
SspI AATATT 1 cut(s) 1237
SspMI CTAG 1 cut(s) 573
StuI AGGCCT 1 cut(s) 744
StyD4I CCNGG 4 cut(s) 188, 739, 1562, 1570
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 3 cut(s) 448, 799, 1292
TaiI ACGT 1 cut(s) 380
TatI WGTACW 3 cut(s) 486, 853, 1287
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 5 cut(s) 511, 590, 968, 1100, 1118
Tru1I TTAA 3 cut(s) 585, 1266, 1557
Tru9I TTAA 3 cut(s) 585, 1266, 1557
TscAI CASTG 5 cut(s) 499, 586, 610, 700, 1324
TseFI GTSAC 4 cut(s) 59, 601, 691, 1370
TseI GCWGC 3 cut(s) 1043, 1331, 1489
Tsp45I GTSAC 4 cut(s) 59, 601, 691, 1370
TspDTI ATGAA 7 cut(s) 269, 603, 1019, 1073, 1263, 1427, 1593
TspGWI ACGGA 2 cut(s) 929, 1361
TspRI CASTG 5 cut(s) 499, 586, 610, 700, 1324
Van91I CCANNNNNTGG 1 cut(s) 1417
XapI RAATTY 6 cut(s) 194, 608, 803, 860, 1006, 1257
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 1418
XmnI GAANNNNTTC 2 cut(s) 685, 1397
XspI CTAG 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 855
Zsp2I ATGCAT 1 cut(s) 1516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.