Rh2AG587900

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014778
Physical Location & Seq
Forward (+)
81950666 .. 81953149
2484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG587900.1

Sequence Viewer

Length: 1587 bp
ATGGAGGAGCTGAGAGGTGCAGGGCATGTGTGCAAGCTCTGTGGTCAGAGTTGCGTGAGCGGCAAGGTCTTGGGAGGTCACATGAGGTCTCACGCGTTCAAGAATCCGATCAAGTCAAGTAGAAAGCACAAGAAAGCCAACATTGGTTTTCAAGATGACGGCGATGGCAATGTGGGTTATGGCCTGAGATTAAACCCCAAAAGGTCCTGGAAATTTTCAGGCAAAGAAGAGGAAGAAGAGATTGTGTGCAAGGTTTGTGGTAAAGCGTTTGAGAGAAAGAACGCTCTGTTTGGTCACATGAGGCATCACTCGGTGAAGCAGAAGAATGAGGCTCAGTGGTGCAGAGATTGCGGTAAAGGGTTTGAGTCTTTGAAAGCTTTGAGTGTTCATAGGAGAGTTCATGCAAAAAGATTGAAGGGTTTTGATGAAACAGAGAGGGGTTTAACCCAGAAGCTTTGCATTGAGAGTTTGGGGTTGGTGAGGAAGAAAAGATCTGCAAGATTCAGGTACAGGATTGCTTCTCCTAGTTCTTCATTTTCAGGTTTGAATTTGAGTGAATGTAAATTTGGTAATGGGTGTGGAGTAGATGTAGAAGAAGCTGCTTTTTGCTTGATGATGATCTCTAGGGGTTTAGGGAATTGGGGTCAGATTAGTTCAGTGGCTGAGTCCTCAAATAACAACTCGTTTTCTGTTGAGGTTGAGTCACCGAGTCAAAGGAAGCGAGTTAGGGACAATGAGGGTGGGGTTTTTGCTTGTGATGGTGATTCTGGGTCTTTACAGATCAAAAGGGCCAAGGTGGAGGTGTCAGCTGATTGTGTTTTGGATTGTGAGAATGACTCTACTGTGAAGGAAGTGTCTGAGTTTGTAGGTGATGAGATGCCTAAATCTGCGTTTGTGTTATATGGTATTGAAGAATTGGATGTGAAAACTAGTGAGGAGGAAGTAGAAGTGGGTTTATCAGGTTTGGGGTCCATGAAGTTTGGTTTGAGCAAGAAGGGTGTGCTTAAGGCTTGTGATTCTGTGAACAAAGGGTTGTATGCTACTGAATCTGAAACCTTTGCTGATTCTAAGAAGAAAAGAGAACACAAATGCAGGATATGCAGAAGGGTTTTCGGCACCCATCAGGCACTTGGAGGCCACCAGAGAGTTCATAAGAGAAGTTACAAAAGCTTAGTGCTGAAGAATGAGGATGGTGAAGATAGAACTCAGATTGGCTCACTTTGTGAGACTGAGGATAATTGCAATCCTGCCAAGCTTGAAAGTAGTGATAACTCAGCGGAGCAGGAGATGGAAACTGTGACTGTGGGAGGTTCTGAGAGGAAGGGTCACGTGTGTGGTATCTGCTTGAAGGTTTTTGCATCAGGCCAAGCTTTGGGTGGTCACAAGAGGTCTCATTATGTCAAAGACTCGGAGATAGCCACAGATAAGACCAGAGTAATGAAGCAGCAGATTTCTGATATCTGTGATGCATTTGAAGTCAGTCACCAATTGAAACTTCAGGAGGAGAATGATGGTGTTGAATTCAAGCCATGGTGGGCTGGAACTGAACAAAAGCATGAGCTGCTGGTGGGTTTGATCCCCAACTAA

Protein Analysis

528

Amino Acids

58.42

Weight (kDa)

8.5

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 443 - 466 2.1e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47240
malus_domestica MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica Prupe.3G257500_v2.0.a1
pyrus_communis pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis RchiOBHm_Chr2g0166281
rosa_laevigata RLG00000021603
rosa_multiflora Rmu_sc0024214.1_g000001
rosa_roxburghii Rroxscaffold_2G00085020
rosa_rugosa Rorug02G0521800
rosa_samantha Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana Rw2G049000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1115
AccB7I CCANNNNNTGG 1 cut(s) 1372
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 95
AciI CCGC 3 cut(s) 60, 351, 1277
AclWI GGATC 1 cut(s) 1570
AcsI RAATTY 4 cut(s) 212, 547, 563, 1520
AcuI CTGAAG 2 cut(s) 1199, 1481
AcvI CACGTG 1 cut(s) 1330
AdeI CACNNNGTG 2 cut(s) 313, 1223
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 1372
AflII CTTAAG 1 cut(s) 1004
AflIII ACRYGT 2 cut(s) 93, 1329
AhlI ACTAGT 1 cut(s) 929
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 4 cut(s) 549, 581, 1479, 1511
AleI CACNNNNGTG 1 cut(s) 1332
Alw26I GTCTC 3 cut(s) 93, 1220, 1395
AlwI GGATC 1 cut(s) 1570
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 4 cut(s) 181, 789, 1135, 1363
ApeKI GCWGC 3 cut(s) 599, 1444, 1561
ApoI RAATTY 4 cut(s) 212, 547, 563, 1520
AspS9I GGNCC 3 cut(s) 204, 789, 969
AsuHPI GGTGA 7 cut(s) 325, 490, 696, 773, 881, 1205, 1475
AvaII GGWCC 2 cut(s) 204, 969
BanI GGYRCC 1 cut(s) 1115
BbrPI CACGTG 1 cut(s) 1330
BbvI GCAGC 3 cut(s) 586, 1456, 1548
BccI CCATC 6 cut(s) 158, 752, 1128, 1184, 1282, 1505
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 93, 1220, 1395
BcuI ACTAGT 1 cut(s) 929
BfaI CTAG 3 cut(s) 525, 624, 930
BfrI CTTAAG 1 cut(s) 1004
BglII AGATCT 1 cut(s) 491
BisI GCNGC 4 cut(s) 61, 600, 1445, 1562
BlsI GCNGC 4 cut(s) 62, 601, 1446, 1563
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 204, 969
BmgT120I GGNCC 3 cut(s) 204, 789, 969
BmiI GGNNCC 2 cut(s) 970, 1117
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 4 cut(s) 313, 867, 1367, 1456
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BsaAI YACGTR 1 cut(s) 1330
BsaBI GATNNNNATC 1 cut(s) 617
BsaI GGTCTC 2 cut(s) 93, 1395
BsaJI CCNNGG 2 cut(s) 792, 1529
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 1372
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 792, 1529
BseGI GGATG 2 cut(s) 925, 1195
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 1 cut(s) 1372
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 8 cut(s) 176, 347, 654, 849, 1220, 1221, 1287, 1305
BseRI GAGGAG 3 cut(s) 20, 950, 1517
BseXI GCAGC 3 cut(s) 586, 1456, 1548
BsgI GTGCAG 2 cut(s) 39, 361
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 183, 791, 1137, 1365
BshNI GGYRCC 1 cut(s) 1115
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 1 cut(s) 1372
BsmAI GTCTC 3 cut(s) 93, 1220, 1395
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 4 cut(s) 183, 791, 1137, 1365
Bso31I GGTCTC 2 cut(s) 93, 1395
Bsp143I GATC 5 cut(s) 108, 491, 618, 780, 1575
Bsp19I CCATGG 1 cut(s) 1529
BspACI CCGC 3 cut(s) 60, 351, 1277
BspANI GGCC 4 cut(s) 183, 791, 1137, 1365
BspCNI CTCAG 8 cut(s) 177, 346, 655, 850, 1219, 1222, 1286, 1306
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 970, 1117
BspPI GGATC 1 cut(s) 1570
BspT107I GGYRCC 1 cut(s) 1115
BspTI CTTAAG 1 cut(s) 1004
BspTNI GGTCTC 2 cut(s) 93, 1395
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 792, 1529
BssMI GATC 5 cut(s) 108, 491, 618, 780, 1575
BssT1I CCWWGG 2 cut(s) 792, 1529
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 3 cut(s) 844, 1297, 1303
Bst6I CTCTTC 2 cut(s) 222, 231
BstAFI CTTAAG 1 cut(s) 1004
BstAPI GCANNNNNTGC 3 cut(s) 348, 1098, 1561
BstBAI YACGTR 1 cut(s) 1330
BstC8I GCNNGC 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 1529
BstF5I GGATG 2 cut(s) 925, 1195
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 5 cut(s) 111, 494, 621, 783, 1578
BstMAI GTCTC 3 cut(s) 93, 1220, 1395
BstMBI GATC 5 cut(s) 108, 491, 618, 780, 1575
BstMWI GCNNNNNNNGC 4 cut(s) 60, 348, 1098, 1561
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 586, 1456, 1548
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BsuRI GGCC 4 cut(s) 183, 791, 1137, 1365
BtgI CCRYGG 1 cut(s) 1529
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 925, 1195
BtsIMutI CAGTG 2 cut(s) 341, 663
Cac8I GCNNGC 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 662
Cfr13I GGNCC 3 cut(s) 204, 789, 969
Csp6I GTAC 1 cut(s) 508
CspCI CAANNNNNGTGG 6 cut(s) 22, 57, 238, 273, 721, 756
CviAII CATG 7 cut(s) 26, 82, 298, 401, 973, 1530, 1556
CviQI GTAC 1 cut(s) 508
DpnI GATC 5 cut(s) 110, 493, 620, 782, 1577
DpnII GATC 5 cut(s) 108, 491, 618, 780, 1575
DraIII CACNNNGTG 2 cut(s) 313, 1223
Eam1104I CTCTTC 2 cut(s) 222, 231
EarI CTCTTC 2 cut(s) 222, 231
Eco130I CCWWGG 2 cut(s) 792, 1529
Eco31I GGTCTC 2 cut(s) 93, 1395
Eco32I GATATC 1 cut(s) 1459
Eco47I GGWCC 2 cut(s) 204, 969
Eco57I CTGAAG 2 cut(s) 1199, 1481
Eco72I CACGTG 1 cut(s) 1330
EcoO109I RGGNCCY 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 1520
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 1459
EcoT14I CCWWGG 2 cut(s) 792, 1529
EcoT22I ATGCAT 1 cut(s) 1471
ErhI CCWWGG 2 cut(s) 792, 1529
FaeI CATG 7 cut(s) 29, 85, 301, 404, 976, 1533, 1559
FaqI GGGAC 1 cut(s) 743
FatI CATG 7 cut(s) 25, 81, 297, 400, 972, 1529, 1555
Fnu4HI GCNGC 4 cut(s) 61, 600, 1445, 1562
FokI GGATG 2 cut(s) 932, 1202
Fsp4HI GCNGC 4 cut(s) 61, 600, 1445, 1562
FspBI CTAG 3 cut(s) 525, 624, 930
GluI GCNGC 4 cut(s) 61, 600, 1445, 1562
HaeIII GGCC 4 cut(s) 183, 791, 1137, 1365
Hin1II CATG 7 cut(s) 29, 85, 301, 404, 976, 1533, 1559
HindIII AAGCTT 5 cut(s) 375, 452, 1168, 1253, 1368
HphI GGTGA 7 cut(s) 325, 490, 696, 773, 881, 1205, 1475
Hpy166II GTNNAC 1 cut(s) 1024
Hpy188I TCNGA 9 cut(s) 48, 108, 648, 859, 1051, 1209, 1315, 1411, 1456
Hpy188III TCNNGA 3 cut(s) 100, 152, 1499
Hpy8I GTNNAC 1 cut(s) 1024
HpyAV CCTTC 6 cut(s) 409, 841, 988, 1098, 1315, 1342
HpyCH4III ACNGT 3 cut(s) 844, 1297, 1303
HpyCH4IV ACGT 1 cut(s) 1329
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 348, 1098, 1561
HpySE526I ACGT 1 cut(s) 1329
Hsp92II CATG 7 cut(s) 29, 85, 301, 404, 976, 1533, 1559
Kzo9I GATC 5 cut(s) 108, 491, 618, 780, 1575
LmnI GCTCC 2 cut(s) 7, 1279
Lsp1109I GCAGC 3 cut(s) 586, 1456, 1548
LweI GCATC 4 cut(s) 313, 867, 1367, 1456
MaeI CTAG 3 cut(s) 525, 624, 930
MaeII ACGT 1 cut(s) 1329
MaeIII GTNAC 8 cut(s) 77, 293, 702, 1160, 1297, 1325, 1379, 1481
MalI GATC 5 cut(s) 110, 493, 620, 782, 1577
MbiI CCGCTC 1 cut(s) 60
MboI GATC 5 cut(s) 108, 491, 618, 780, 1575
MfeI CAATTG 1 cut(s) 1487
MflI RGATCY 1 cut(s) 491
MluCI AATT 8 cut(s) 212, 547, 563, 637, 914, 1237, 1487, 1520
MluI ACGCGT 1 cut(s) 93
MlyI GAGTC 6 cut(s) 374, 674, 710, 718, 830, 1400
Mph1103I ATGCAT 1 cut(s) 1471
MseI TTAA 3 cut(s) 191, 443, 1005
MslI CAYNNNNRTG 1 cut(s) 1332
MspA1I CMGCKG 2 cut(s) 809, 1277
MspCI CTTAAG 1 cut(s) 1004
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 1487
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 60, 348, 1098, 1561
NcoI CCATGG 1 cut(s) 1529
NdeII GATC 5 cut(s) 108, 491, 618, 780, 1575
NlaIII CATG 7 cut(s) 29, 85, 301, 404, 976, 1533, 1559
NlaIV GGNNCC 2 cut(s) 970, 1117
NmuCI GTSAC 7 cut(s) 77, 293, 702, 1297, 1325, 1379, 1481
NsiI ATGCAT 1 cut(s) 1471
NspI RCATGY 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 1332
PfeI GAWTC 6 cut(s) 103, 501, 764, 1016, 1046, 1064
PflMI CCANNNNNTGG 1 cut(s) 1372
PfoI TCCNGGA 1 cut(s) 206
PkrI GCNGC 4 cut(s) 62, 601, 1446, 1563
PleI GAGTC 6 cut(s) 373, 673, 709, 717, 830, 1400
PmaCI CACGTG 1 cut(s) 1330
PmlI CACGTG 1 cut(s) 1330
PpsI GAGTC 6 cut(s) 373, 673, 709, 717, 830, 1400
Ppu21I YACGTR 1 cut(s) 1330
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 206
PspCI CACGTG 1 cut(s) 1330
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 970, 1117
PspPI GGNCC 3 cut(s) 204, 789, 969
PspPPI RGGWCCY 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 1332
SaqAI TTAA 3 cut(s) 191, 443, 1005
SatI GCNGC 4 cut(s) 61, 600, 1445, 1562
Sau3AI GATC 5 cut(s) 108, 491, 618, 780, 1575
Sau96I GGNCC 3 cut(s) 204, 789, 969
SchI GAGTC 6 cut(s) 374, 674, 710, 718, 830, 1400
ScrFI CCNGG 1 cut(s) 208
SfaNI GCATC 4 cut(s) 313, 867, 1367, 1456
SinI GGWCC 2 cut(s) 204, 969
SmiMI CAYNNNNRTG 1 cut(s) 1332
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
SpeI ACTAGT 1 cut(s) 929
Sse9I AATT 8 cut(s) 212, 547, 563, 637, 914, 1237, 1487, 1520
SsiI CCGC 3 cut(s) 60, 351, 1277
SspMI CTAG 3 cut(s) 525, 624, 930
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 792, 1529
TaaI ACNGT 3 cut(s) 844, 1297, 1303
TaiI ACGT 1 cut(s) 1332
TasI AATT 8 cut(s) 212, 547, 563, 637, 914, 1237, 1487, 1520
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 6 cut(s) 103, 501, 764, 1016, 1046, 1064
Tru1I TTAA 3 cut(s) 191, 443, 1005
Tru9I TTAA 3 cut(s) 191, 443, 1005
TscAI CASTG 2 cut(s) 341, 663
TseFI GTSAC 7 cut(s) 77, 293, 702, 1297, 1325, 1379, 1481
TseI GCWGC 3 cut(s) 599, 1444, 1561
Tsp45I GTSAC 7 cut(s) 77, 293, 702, 1297, 1325, 1379, 1481
TspDTI ATGAA 7 cut(s) 377, 389, 441, 522, 989, 1139, 1454
TspRI CASTG 2 cut(s) 341, 663
Van91I CCANNNNNTGG 1 cut(s) 1372
Vha464I CTTAAG 1 cut(s) 1004
VpaK11BI GGWCC 2 cut(s) 204, 969
XapI RAATTY 4 cut(s) 212, 547, 563, 1520
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 2 cut(s) 1127, 1373
XspI CTAG 3 cut(s) 525, 624, 930
Zsp2I ATGCAT 1 cut(s) 1471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.