Rh2BG599900

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014778
Physical Location & Seq
Forward (+)
82075503 .. 82077101
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG599900.1

Sequence Viewer

Length: 1599 bp
ATGGAGGAGCTGAGAGGTGCAGGGCATGTGTGCAAGCTCTGTGGTCAGAGTTGCGTGAGCGGCAAGGTCTTGGGAGGTCACATGAGGTCTCACGCGTTCAAGAATCCGATCAAGTCAAGTAGAAAGCACAAGAAAGCCAACATGGGTTTTCAAGATGACGGCGATGGCAATGTGGGTTATGGCCTGAGATTAAACCCCAAAAGGTCCTGGAAATTTTCAGGCAAAGAAGAGGAAGACGAGATTGTGTGCAAGGTTTGTGGTAAAGCGTTTGAGAGAAAGAACGCTCTGTTTGGTCACATGAAGCATCACTCGGTGAAGCAGAGGAATGAGGCTCAGTGGTGCAGAGATTGCGGTAAAGGGTTTGAGTCTTTGAAAGCTTTGACTGTTCATAGGAGAGTTCATGCAAAAAGATTGAAGGGTTTTGATGAAACAGAGAGGGGTTTAACCCAGAAGCTTTGCATTGAGAGTTTGGGGTTGGTGAGGAAGAAAAGATCTGCAAGATTCAGGTACAGGCTTGCTTCTCCTAGTTCTTCATTTCCTGGTTTGAATTTGAGTGAATGTAAATTTGGTAATGGGTGTGGAGTAGATGTAGAAGAAGCTGCTTTTTGCTTGATGATGATCTCTAGGGGTTTAGGGAATTGGGGTCAGATTAGTTCAGTGGCTGAGTCCTCAAATAACAACTCGTTTTCTGTTGAGGTTGAGTCACCGAGTCAAAGGAAGCGAGTTAGGGACAATGAGGGTGGGGTTTTTGCTTGTGATGATGATTCTGGATCTTTACAGATCAAAAGGGCCAAGGTGGAGGTGTCAGCTGATTGTGTTTTGGATTGTGAGAATGACTCTACTGTGAAGGAAGTGTCTGAGTTTGGTGAAATTGATTCTGAGTTTGTAGGTGATGAGATGCCTAAATCTGGGTTTGTGTTATATGGTATTGAAGAATTGGATGTGGAAACTAGTGAGGAGGAAGTAGAAGTGGGTTTGGGATCCATGAAGTTTGGTTTGAGTAAGAAGGCTGTGCTTAAGGCTTGTGATTCTGTGAACAAAGGGTTGTATGCTACTGAATCCGAAACCTTTGCTGATTCTAAGAAGAAAAGAGAACACAAGTGCAGGACATGCAGAAGGGTTTTCGGCACCCATCAGGCACTTGGAGGCCACCAGAGAGTTCATAAGAGAAGTTACAAAAGCTTAGTGCTGAAGAATGAGGATGGTGAAGATAGAACTCAGATTGGCACACTTTGTGAGACTGAGGATAATTGCAATCCTGCCAAGCTTGAAAGTAGTGATAACTCAGTGGAGCAGGAGATGGAAACTGTGACTGTGGGAGGTTCTGAGAGGAAGGGTCACGTGTGTGGTATCTGCTTGAAGGTTTTTGCATCAGGCCAAGCTTTGGGTGGTCACAAGAGGTCTCATTATGTCAAAGACTCGGAGAGAGCCACAGATAAGACCAGAGTAATGAAGCAACAGATTTCTGATATCTGTGATGCATTTGAAGTCAGTCACCAATTGAGTCTTCAGGAGGAGAATGATGGTGTTGAATTCAAGCCATGGTGGGCTGGAACTGAACAAAAGCATGAGCTGCTGGTGGGTTTGATCCCCAACTAA

Protein Analysis

532

Amino Acids

59.06

Weight (kDa)

7.75

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 447 - 470 2.1e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47240
malus_domestica MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica Prupe.3G257500_v2.0.a1
pyrus_communis pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis RchiOBHm_Chr2g0166281
rosa_laevigata RLG00000021603
rosa_multiflora Rmu_sc0024214.1_g000001
rosa_roxburghii Rroxscaffold_2G00085020
rosa_rugosa Rorug02G0521800
rosa_samantha Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana Rw2G049000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1127
AccB7I CCANNNNNTGG 1 cut(s) 1384
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 60, 351
AclWI GGATC 4 cut(s) 778, 975, 988, 1582
AcsI RAATTY 4 cut(s) 212, 547, 563, 1532
AcuI CTGAAG 2 cut(s) 1211, 1493
AcvI CACGTG 1 cut(s) 1342
AdeI CACNNNGTG 2 cut(s) 313, 1235
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 908, 1384
AflII CTTAAG 1 cut(s) 1016
AflIII ACRYGT 2 cut(s) 93, 1341
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 2 cut(s) 206, 538
AjuI GAANNNNNNNTTGG 4 cut(s) 549, 581, 1491, 1523
AleI CACNNNNGTG 1 cut(s) 1344
Alw26I GTCTC 3 cut(s) 93, 1232, 1407
AlwI GGATC 4 cut(s) 778, 975, 988, 1582
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 4 cut(s) 181, 789, 1147, 1375
ApeKI GCWGC 2 cut(s) 599, 1573
ApoI RAATTY 4 cut(s) 212, 547, 563, 1532
AspS9I GGNCC 2 cut(s) 204, 789
AsuHPI GGTGA 7 cut(s) 325, 490, 696, 878, 902, 1217, 1487
AvaII GGWCC 1 cut(s) 204
BamHI GGATCC 1 cut(s) 980
BanI GGYRCC 1 cut(s) 1127
BbrPI CACGTG 1 cut(s) 1342
BbsI GAAGAC 2 cut(s) 240, 1499
BbvI GCAGC 2 cut(s) 586, 1560
BccI CCATC 5 cut(s) 158, 1140, 1196, 1294, 1517
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 1052, 1086
BciT130I CCWGG 2 cut(s) 208, 540
BcoDI GTCTC 3 cut(s) 93, 1232, 1407
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 3 cut(s) 525, 624, 951
BfrI CTTAAG 1 cut(s) 1016
BglII AGATCT 1 cut(s) 491
BisI GCNGC 3 cut(s) 61, 600, 1574
BlsI GCNGC 3 cut(s) 62, 601, 1575
Bme1390I CCNGG 2 cut(s) 208, 540
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 204, 789
BmiI GGNNCC 2 cut(s) 982, 1129
BmrFI CCNGG 2 cut(s) 208, 540
BmsI GCATC 4 cut(s) 313, 888, 1379, 1468
BpiI GAAGAC 2 cut(s) 240, 1499
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BsaAI YACGTR 1 cut(s) 1342
BsaBI GATNNNNATC 1 cut(s) 617
BsaI GGTCTC 2 cut(s) 93, 1407
BsaJI CCNNGG 2 cut(s) 792, 1541
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 908, 1384
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 2 cut(s) 208, 540
BseDI CCNNGG 2 cut(s) 792, 1541
BseGI GGATG 2 cut(s) 946, 1207
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 2 cut(s) 908, 1384
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 9 cut(s) 176, 347, 654, 849, 870, 1232, 1233, 1299, 1317
BseRI GAGGAG 3 cut(s) 20, 971, 1529
BseXI GCAGC 2 cut(s) 586, 1560
BsgI GTGCAG 3 cut(s) 39, 361, 1123
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 183, 791, 1149, 1377
BshNI GGYRCC 1 cut(s) 1127
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 2 cut(s) 908, 1384
BsmAI GTCTC 3 cut(s) 93, 1232, 1407
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 4 cut(s) 183, 791, 1149, 1377
Bso31I GGTCTC 2 cut(s) 93, 1407
Bsp143I GATC 7 cut(s) 108, 491, 618, 770, 780, 980, 1587
Bsp19I CCATGG 1 cut(s) 1541
BspACI CCGC 2 cut(s) 60, 351
BspANI GGCC 4 cut(s) 183, 791, 1149, 1377
BspCNI CTCAG 9 cut(s) 177, 346, 655, 850, 871, 1231, 1234, 1298, 1318
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 982, 1129
BspPI GGATC 4 cut(s) 778, 975, 988, 1582
BspT107I GGYRCC 1 cut(s) 1127
BspTI CTTAAG 1 cut(s) 1016
BspTNI GGTCTC 2 cut(s) 93, 1407
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 792, 1541
BssMI GATC 7 cut(s) 108, 491, 618, 770, 780, 980, 1587
BssT1I CCWWGG 2 cut(s) 792, 1541
Bst2UI CCWGG 2 cut(s) 208, 540
Bst4CI ACNGT 4 cut(s) 385, 844, 1309, 1315
Bst6I CTCTTC 1 cut(s) 222
BstAFI CTTAAG 1 cut(s) 1016
BstAPI GCANNNNNTGC 3 cut(s) 348, 1110, 1573
BstBAI YACGTR 1 cut(s) 1342
BstC8I GCNNGC 2 cut(s) 35, 516
BstDSI CCRYGG 1 cut(s) 1541
BstF5I GGATG 2 cut(s) 946, 1207
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 7 cut(s) 111, 494, 621, 773, 783, 983, 1590
BstMAI GTCTC 3 cut(s) 93, 1232, 1407
BstMBI GATC 7 cut(s) 108, 491, 618, 770, 780, 980, 1587
BstMWI GCNNNNNNNGC 4 cut(s) 60, 348, 1110, 1573
BstNI CCWGG 2 cut(s) 208, 540
BstNSI RCATGY 2 cut(s) 29, 1113
BstSCI CCNGG 2 cut(s) 206, 538
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 586, 1560
BstV2I GAAGAC 2 cut(s) 240, 1499
BstX2I RGATCY 3 cut(s) 491, 770, 980
BstYI RGATCY 3 cut(s) 491, 770, 980
BsuRI GGCC 4 cut(s) 183, 791, 1149, 1377
BtgI CCRYGG 1 cut(s) 1541
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 946, 1207
BtsIMutI CAGTG 3 cut(s) 341, 663, 1293
Cac8I GCNNGC 2 cut(s) 35, 516
CaiI CAGNNNCTG 1 cut(s) 662
Cfr13I GGNCC 2 cut(s) 204, 789
Csp6I GTAC 1 cut(s) 508
CspCI CAANNNNNGTGG 6 cut(s) 22, 57, 238, 273, 721, 756
CviAII CATG 9 cut(s) 26, 82, 142, 298, 401, 985, 1110, 1542, 1568
CviQI GTAC 1 cut(s) 508
DpnI GATC 7 cut(s) 110, 493, 620, 772, 782, 982, 1589
DpnII GATC 7 cut(s) 108, 491, 618, 770, 780, 980, 1587
DraIII CACNNNGTG 2 cut(s) 313, 1235
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 792, 1541
Eco31I GGTCTC 2 cut(s) 93, 1407
Eco32I GATATC 1 cut(s) 1471
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 1211, 1493
Eco72I CACGTG 1 cut(s) 1342
EcoO109I RGGNCCY 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 1532
EcoRII CCWGG 2 cut(s) 206, 538
EcoRV GATATC 1 cut(s) 1471
EcoT14I CCWWGG 2 cut(s) 792, 1541
EcoT22I ATGCAT 1 cut(s) 1483
ErhI CCWWGG 2 cut(s) 792, 1541
FaeI CATG 9 cut(s) 29, 85, 145, 301, 404, 988, 1113, 1545, 1571
FaqI GGGAC 1 cut(s) 743
FatI CATG 9 cut(s) 25, 81, 141, 297, 400, 984, 1109, 1541, 1567
Fnu4HI GCNGC 3 cut(s) 61, 600, 1574
FokI GGATG 2 cut(s) 953, 1214
Fsp4HI GCNGC 3 cut(s) 61, 600, 1574
FspBI CTAG 3 cut(s) 525, 624, 951
GluI GCNGC 3 cut(s) 61, 600, 1574
HaeIII GGCC 4 cut(s) 183, 791, 1149, 1377
Hin1II CATG 9 cut(s) 29, 85, 145, 301, 404, 988, 1113, 1545, 1571
HindIII AAGCTT 5 cut(s) 375, 452, 1180, 1265, 1380
HphI GGTGA 7 cut(s) 325, 490, 696, 878, 902, 1217, 1487
Hpy166II GTNNAC 1 cut(s) 1036
Hpy188III TCNNGA 4 cut(s) 100, 152, 768, 1511
Hpy8I GTNNAC 1 cut(s) 1036
HpyAV CCTTC 6 cut(s) 409, 841, 1000, 1110, 1327, 1354
HpyCH4III ACNGT 4 cut(s) 385, 844, 1309, 1315
HpyCH4IV ACGT 1 cut(s) 1341
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 348, 1110, 1573
HpySE526I ACGT 1 cut(s) 1341
Hsp92II CATG 9 cut(s) 29, 85, 145, 301, 404, 988, 1113, 1545, 1571
Kzo9I GATC 7 cut(s) 108, 491, 618, 770, 780, 980, 1587
LmnI GCTCC 2 cut(s) 7, 1291
Lsp1109I GCAGC 2 cut(s) 586, 1560
LweI GCATC 4 cut(s) 313, 888, 1379, 1468
MaeI CTAG 3 cut(s) 525, 624, 951
MaeII ACGT 1 cut(s) 1341
MaeIII GTNAC 8 cut(s) 77, 293, 702, 1172, 1309, 1337, 1391, 1493
MalI GATC 7 cut(s) 110, 493, 620, 772, 782, 982, 1589
MbiI CCGCTC 1 cut(s) 60
MboI GATC 7 cut(s) 108, 491, 618, 770, 780, 980, 1587
MfeI CAATTG 1 cut(s) 1499
MflI RGATCY 3 cut(s) 491, 770, 980
MluCI AATT 9 cut(s) 212, 547, 563, 637, 870, 935, 1249, 1499, 1532
MluI ACGCGT 1 cut(s) 93
MlyI GAGTC 7 cut(s) 374, 674, 710, 718, 830, 1412, 1513
Mph1103I ATGCAT 1 cut(s) 1483
MseI TTAA 3 cut(s) 191, 443, 1017
MslI CAYNNNNRTG 1 cut(s) 1344
MspA1I CMGCKG 1 cut(s) 809
MspCI CTTAAG 1 cut(s) 1016
MspR9I CCNGG 2 cut(s) 208, 540
MunI CAATTG 1 cut(s) 1499
MvaI CCWGG 2 cut(s) 208, 540
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 60, 348, 1110, 1573
NcoI CCATGG 1 cut(s) 1541
NdeII GATC 7 cut(s) 108, 491, 618, 770, 780, 980, 1587
NlaIII CATG 9 cut(s) 29, 85, 145, 301, 404, 988, 1113, 1545, 1571
NlaIV GGNNCC 2 cut(s) 982, 1129
NmuCI GTSAC 7 cut(s) 77, 293, 702, 1309, 1337, 1391, 1493
NsiI ATGCAT 1 cut(s) 1483
NspI RCATGY 2 cut(s) 29, 1113
OliI CACNNNNGTG 1 cut(s) 1344
PfeI GAWTC 7 cut(s) 103, 501, 764, 875, 1028, 1058, 1076
PflMI CCANNNNNTGG 1 cut(s) 1384
PfoI TCCNGGA 1 cut(s) 206
PkrI GCNGC 3 cut(s) 62, 601, 1575
PleI GAGTC 7 cut(s) 373, 673, 709, 717, 830, 1412, 1512
PmaCI CACGTG 1 cut(s) 1342
PmlI CACGTG 1 cut(s) 1342
PpsI GAGTC 7 cut(s) 373, 673, 709, 717, 830, 1412, 1512
Ppu21I YACGTR 1 cut(s) 1342
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 206, 538
PspCI CACGTG 1 cut(s) 1342
PspGI CCWGG 2 cut(s) 206, 538
PspN4I GGNNCC 2 cut(s) 982, 1129
PspPI GGNCC 2 cut(s) 204, 789
PspPPI RGGWCCY 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 3 cut(s) 491, 770, 980
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 1344
SaqAI TTAA 3 cut(s) 191, 443, 1017
SatI GCNGC 3 cut(s) 61, 600, 1574
Sau3AI GATC 7 cut(s) 108, 491, 618, 770, 780, 980, 1587
Sau96I GGNCC 2 cut(s) 204, 789
SchI GAGTC 7 cut(s) 374, 674, 710, 718, 830, 1412, 1513
ScrFI CCNGG 2 cut(s) 208, 540
SfaNI GCATC 4 cut(s) 313, 888, 1379, 1468
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 1344
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 9 cut(s) 212, 547, 563, 637, 870, 935, 1249, 1499, 1532
SsiI CCGC 2 cut(s) 60, 351
SspMI CTAG 3 cut(s) 525, 624, 951
StyD4I CCNGG 2 cut(s) 206, 538
StyI CCWWGG 2 cut(s) 792, 1541
TaaI ACNGT 4 cut(s) 385, 844, 1309, 1315
TaiI ACGT 1 cut(s) 1344
TasI AATT 9 cut(s) 212, 547, 563, 637, 870, 935, 1249, 1499, 1532
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 7 cut(s) 103, 501, 764, 875, 1028, 1058, 1076
Tru1I TTAA 3 cut(s) 191, 443, 1017
Tru9I TTAA 3 cut(s) 191, 443, 1017
TscAI CASTG 3 cut(s) 341, 663, 1293
TseFI GTSAC 7 cut(s) 77, 293, 702, 1309, 1337, 1391, 1493
TseI GCWGC 2 cut(s) 599, 1573
Tsp45I GTSAC 7 cut(s) 77, 293, 702, 1309, 1337, 1391, 1493
TspDTI ATGAA 8 cut(s) 314, 377, 389, 441, 522, 1001, 1151, 1466
TspRI CASTG 3 cut(s) 341, 663, 1293
Van91I CCANNNNNTGG 1 cut(s) 1384
Vha464I CTTAAG 1 cut(s) 1016
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 4 cut(s) 212, 547, 563, 1532
XceI RCATGY 2 cut(s) 29, 1113
XcmI CCANNNNNNNNNTGG 2 cut(s) 1139, 1385
XspI CTAG 3 cut(s) 525, 624, 951
Zsp2I ATGCAT 1 cut(s) 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.