Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024214.1

Orthogroup ID

OG0014778

Physical Location & Seq

Genomic Coordinates Forward (+)

1641 .. 3513

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024214.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

atggaggagctgagaggtgcagggcatgtgtgcaagctctgtggtcagagttgcgtgagcggcaaggtcttgggaggtcacatgaggtctcacgcgttcaagaatccgatcaagtcaagtagaaagcacaagaaagccaacatgggttttcaagatgacggcgatggcaatgtgggttatggcctgagattaaaccccaaaaggtcctggaaattttcaggcaaagaagaggaagacgagattgtgtgcaaggtttgtggtaaagcgtttgagagaaagaacgctctgtttggtcacatgaagcatcactcggtgaagcagaggaatgaggctcagtggtgcagagattgcggtaaagggtttgagtctttgaaagctttgactgttcataggagagttcatgcaaaaagattgaagggttttgatgaaacagagaggggtttaacccagaagctttgcattgagagtttggggttggtgaggaagaaaagatctgcaagattcagattagttcgtgttcataggagagttcatgcaaaaagattgaagggttttgatgaaaaagagaggggtttaacccagaagctttgcattgagagtttggggttggtgaggaagaaaagatctgcaagattcaggtacaggattgcttctcctagttcttcatttcctggtttgaatttgagtgaatgtaaatttggtaatgggtgtggagtagatgtagaagaagctgctttttgcttgatgatgatctctaggggtttagggaattggggtcagattagttcagtggctgagtcctcaaataacaactcgttttctgttgaggttgagtcaccgagtcaaaggaagcgagttagggacaatgagggtggggtttttgcttgtgatgatgattctgggtctttacagatcaaaagggccaaggtggaggtgtcagctgattgtgttttggattgtgagaatgactctactgtgaaggaagtgtctgagtttggtgaaattgattctgagtttgtaggtgatgagatgcctaaatctgggtttgtgttatatggtattgaagaattggatgtggaaactagtgaggaggaagtagaagtgggtttgggatccatgaagtttggtttgagtaagaaggctgtgcttaaggcttgtgattctgtgaacaaagggttgtatgctactgaatccgaaacctttgctgattctaagaagaaaagagaacacaagtgcaggacatgcagaagggttttcggcacccatcaggcacttggaggccaccagagagttcataagagaagttacaaaagcttagtgctgaagaatgaggatggtgaagatagaactcagattggcacactttgtgagactgaggataattgcaatcctgccaagcttgaaagtagtgataactcagtggagcaggagatggaaactgtgactgtgggaggttctgagaggaagggtcacgtgtgtggtatctgcttgaaggtttttgcatcaggccaagctttgggtggtcacaagaggtctcattatgtcaaagactcggagatagccacagataagaccagagtaatgaagcaacagatttttgatatctgtgatgcatttgaagtcagtcaccaattgaaacttcaggaggagaatgatggtgttgaattcaagccatggtgggctggaactgaacaaaagcatgagctgctggtgggtttgatccccaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

576

Amino Acids

64.37

Weight (kDa)

8.77

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47240
malus_domestica	MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica	Prupe.3G257500_v2.0.a1
pyrus_communis	pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis	RchiOBHm_Chr2g0166281
rosa_laevigata	RLG00000021603
rosa_multiflora	Rmu_sc0024214.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085020
rosa_rugosa	Rorug02G0521800
rosa_samantha	Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana	Rw2G049000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1259
AccB7I	CCANNNNNTGG	1 cut(s)	1516
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	60, 351
AclWI	GGATC	3 cut(s)	1107, 1120, 1714
AcsI	RAATTY	4 cut(s)	212, 679, 695, 1664
AcuI	CTGAAG	2 cut(s)	1343, 1625
AcvI	CACGTG	1 cut(s)	1474
AdeI	CACNNNGTG	2 cut(s)	313, 1367
AfaI	GTAC	1 cut(s)	641
AfiI	CCNNNNNNNGG	2 cut(s)	1040, 1516
AflII	CTTAAG	1 cut(s)	1148
AflIII	ACRYGT	2 cut(s)	93, 1473
AhlI	ACTAGT	1 cut(s)	1082
AjnI	CCWGG	2 cut(s)	206, 670
AjuI	GAANNNNNNNTTGG	4 cut(s)	681, 713, 1623, 1655
AleI	CACNNNNGTG	1 cut(s)	1476
Alw26I	GTCTC	3 cut(s)	93, 1364, 1539
AlwI	GGATC	3 cut(s)	1107, 1120, 1714
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	4 cut(s)	181, 921, 1279, 1507
ApeKI	GCWGC	2 cut(s)	731, 1705
ApoI	RAATTY	4 cut(s)	212, 679, 695, 1664
AspS9I	GGNCC	2 cut(s)	204, 921
AsuHPI	GGTGA	8 cut(s)	325, 490, 622, 828, 1010, 1034, 1349, 1619
AvaII	GGWCC	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	1112
BanI	GGYRCC	1 cut(s)	1259
BbrPI	CACGTG	1 cut(s)	1474
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	718, 1692
BccI	CCATC	5 cut(s)	158, 1272, 1328, 1426, 1649
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	1184, 1218
BciT130I	CCWGG	2 cut(s)	208, 672
BcoDI	GTCTC	3 cut(s)	93, 1364, 1539
BcuI	ACTAGT	1 cut(s)	1082
BfaI	CTAG	3 cut(s)	657, 756, 1083
BfrI	CTTAAG	1 cut(s)	1148
BglII	AGATCT	2 cut(s)	491, 623
BisI	GCNGC	3 cut(s)	61, 732, 1706
BlsI	GCNGC	3 cut(s)	62, 733, 1707
Bme1390I	CCNGG	2 cut(s)	208, 672
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	204, 921
BmiI	GGNNCC	2 cut(s)	1114, 1261
BmrFI	CCNGG	2 cut(s)	208, 672
BmsI	GCATC	4 cut(s)	313, 1020, 1511, 1600
BpiI	GAAGAC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	953, 985
BsaAI	YACGTR	1 cut(s)	1474
BsaBI	GATNNNNATC	1 cut(s)	749
BsaI	GGTCTC	2 cut(s)	93, 1539
BsaJI	CCNNGG	2 cut(s)	924, 1673
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	1040, 1516
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	749
BseBI	CCWGG	2 cut(s)	208, 672
BseDI	CCNNGG	2 cut(s)	924, 1673
BseGI	GGATG	2 cut(s)	1078, 1339
BseJI	GATNNNNATC	1 cut(s)	749
BseLI	CCNNNNNNNGG	2 cut(s)	1040, 1516
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	9 cut(s)	176, 347, 786, 981, 1002, 1364, 1365, 1431, 1449
BseRI	GAGGAG	3 cut(s)	20, 1103, 1661
BseXI	GCAGC	2 cut(s)	718, 1692
BsgI	GTGCAG	3 cut(s)	39, 361, 1255
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	4 cut(s)	183, 923, 1281, 1509
BshNI	GGYRCC	1 cut(s)	1259
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	1040, 1516
BsmAI	GTCTC	3 cut(s)	93, 1364, 1539
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	4 cut(s)	183, 923, 1281, 1509
Bso31I	GGTCTC	2 cut(s)	93, 1539
Bsp143I	GATC	7 cut(s)	108, 491, 623, 750, 912, 1112, 1719
Bsp19I	CCATGG	1 cut(s)	1673
BspACI	CCGC	2 cut(s)	60, 351
BspANI	GGCC	4 cut(s)	183, 923, 1281, 1509
BspCNI	CTCAG	9 cut(s)	177, 346, 787, 982, 1003, 1363, 1366, 1430, 1450
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	1114, 1261
BspPI	GGATC	3 cut(s)	1107, 1120, 1714
BspT107I	GGYRCC	1 cut(s)	1259
BspTI	CTTAAG	1 cut(s)	1148
BspTNI	GGTCTC	2 cut(s)	93, 1539
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	924, 1673
BssMI	GATC	7 cut(s)	108, 491, 623, 750, 912, 1112, 1719
BssT1I	CCWWGG	2 cut(s)	924, 1673
Bst2UI	CCWGG	2 cut(s)	208, 672
Bst4CI	ACNGT	4 cut(s)	385, 976, 1441, 1447
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	1148
BstAPI	GCANNNNNTGC	3 cut(s)	348, 1242, 1705
BstBAI	YACGTR	1 cut(s)	1474
BstC8I	GCNNGC	1 cut(s)	35
BstDSI	CCRYGG	1 cut(s)	1673
BstF5I	GGATG	2 cut(s)	1078, 1339
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	7 cut(s)	111, 494, 626, 753, 915, 1115, 1722
BstMAI	GTCTC	3 cut(s)	93, 1364, 1539
BstMBI	GATC	7 cut(s)	108, 491, 623, 750, 912, 1112, 1719
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 348, 1242, 1705
BstNI	CCWGG	2 cut(s)	208, 672
BstNSI	RCATGY	2 cut(s)	29, 1245
BstSCI	CCNGG	2 cut(s)	206, 670
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	718, 1692
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	3 cut(s)	491, 623, 1112
BstYI	RGATCY	3 cut(s)	491, 623, 1112
BsuRI	GGCC	4 cut(s)	183, 923, 1281, 1509
BtgI	CCRYGG	1 cut(s)	1673
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	1078, 1339
BtsIMutI	CAGTG	3 cut(s)	341, 795, 1425
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	794
Cfr13I	GGNCC	2 cut(s)	204, 921
Csp6I	GTAC	1 cut(s)	640
CspCI	CAANNNNNGTGG	6 cut(s)	22, 57, 238, 273, 853, 888
CviQI	GTAC	1 cut(s)	640
DpnI	GATC	7 cut(s)	110, 493, 625, 752, 914, 1114, 1721
DpnII	GATC	7 cut(s)	108, 491, 623, 750, 912, 1112, 1719
DraIII	CACNNNGTG	2 cut(s)	313, 1367
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	924, 1673
Eco31I	GGTCTC	2 cut(s)	93, 1539
Eco32I	GATATC	1 cut(s)	1603
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	1343, 1625
Eco72I	CACGTG	1 cut(s)	1474
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	1664
EcoRII	CCWGG	2 cut(s)	206, 670
EcoRV	GATATC	1 cut(s)	1603
EcoT14I	CCWWGG	2 cut(s)	924, 1673
EcoT22I	ATGCAT	1 cut(s)	1615
ErhI	CCWWGG	2 cut(s)	924, 1673
FaqI	GGGAC	1 cut(s)	875
Fnu4HI	GCNGC	3 cut(s)	61, 732, 1706
FokI	GGATG	2 cut(s)	1085, 1346
Fsp4HI	GCNGC	3 cut(s)	61, 732, 1706
FspBI	CTAG	3 cut(s)	657, 756, 1083
GluI	GCNGC	3 cut(s)	61, 732, 1706
HaeIII	GGCC	4 cut(s)	183, 923, 1281, 1509
HindIII	AAGCTT	6 cut(s)	375, 452, 584, 1312, 1397, 1512
HphI	GGTGA	8 cut(s)	325, 490, 622, 828, 1010, 1034, 1349, 1619
Hpy166II	GTNNAC	1 cut(s)	1168
Hpy188III	TCNNGA	3 cut(s)	100, 152, 1643
Hpy8I	GTNNAC	1 cut(s)	1168
HpyAV	CCTTC	7 cut(s)	409, 541, 973, 1132, 1242, 1459, 1486
HpyCH4III	ACNGT	4 cut(s)	385, 976, 1441, 1447
HpyCH4IV	ACGT	1 cut(s)	1473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 348, 1242, 1705
HpySE526I	ACGT	1 cut(s)	1473
Kzo9I	GATC	7 cut(s)	108, 491, 623, 750, 912, 1112, 1719
LmnI	GCTCC	2 cut(s)	7, 1423
Lsp1109I	GCAGC	2 cut(s)	718, 1692
LweI	GCATC	4 cut(s)	313, 1020, 1511, 1600
MaeI	CTAG	3 cut(s)	657, 756, 1083
MaeII	ACGT	1 cut(s)	1473
MaeIII	GTNAC	8 cut(s)	77, 293, 834, 1304, 1441, 1469, 1523, 1625
MalI	GATC	7 cut(s)	110, 493, 625, 752, 914, 1114, 1721
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	7 cut(s)	108, 491, 623, 750, 912, 1112, 1719
MfeI	CAATTG	1 cut(s)	1631
MflI	RGATCY	3 cut(s)	491, 623, 1112
MluCI	AATT	9 cut(s)	212, 679, 695, 769, 1002, 1067, 1381, 1631, 1664
MluI	ACGCGT	1 cut(s)	93
MlyI	GAGTC	6 cut(s)	374, 806, 842, 850, 962, 1544
Mph1103I	ATGCAT	1 cut(s)	1615
MseI	TTAA	4 cut(s)	191, 443, 575, 1149
MslI	CAYNNNNRTG	1 cut(s)	1476
MspA1I	CMGCKG	1 cut(s)	941
MspCI	CTTAAG	1 cut(s)	1148
MspR9I	CCNGG	2 cut(s)	208, 672
MunI	CAATTG	1 cut(s)	1631
MvaI	CCWGG	2 cut(s)	208, 672
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	60, 348, 1242, 1705
NcoI	CCATGG	1 cut(s)	1673
NdeII	GATC	7 cut(s)	108, 491, 623, 750, 912, 1112, 1719
NlaIV	GGNNCC	2 cut(s)	1114, 1261
NmuCI	GTSAC	7 cut(s)	77, 293, 834, 1441, 1469, 1523, 1625
NsiI	ATGCAT	1 cut(s)	1615
NspI	RCATGY	2 cut(s)	29, 1245
OliI	CACNNNNGTG	1 cut(s)	1476
PfeI	GAWTC	8 cut(s)	103, 501, 633, 896, 1007, 1160, 1190, 1208
PflMI	CCANNNNNTGG	1 cut(s)	1516
PfoI	TCCNGGA	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	62, 733, 1707
PleI	GAGTC	6 cut(s)	373, 805, 841, 849, 962, 1544
PmaCI	CACGTG	1 cut(s)	1474
PmlI	CACGTG	1 cut(s)	1474
PpsI	GAGTC	6 cut(s)	373, 805, 841, 849, 962, 1544
Ppu21I	YACGTR	1 cut(s)	1474
PpuMI	RGGWCCY	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	206, 670
PspCI	CACGTG	1 cut(s)	1474
PspGI	CCWGG	2 cut(s)	206, 670
PspN4I	GGNNCC	2 cut(s)	1114, 1261
PspPI	GGNCC	2 cut(s)	204, 921
PspPPI	RGGWCCY	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	3 cut(s)	491, 623, 1112
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	1476
SaqAI	TTAA	4 cut(s)	191, 443, 575, 1149
SatI	GCNGC	3 cut(s)	61, 732, 1706
Sau3AI	GATC	7 cut(s)	108, 491, 623, 750, 912, 1112, 1719
Sau96I	GGNCC	2 cut(s)	204, 921
SchI	GAGTC	6 cut(s)	374, 806, 842, 850, 962, 1544
ScrFI	CCNGG	2 cut(s)	208, 672
SfaNI	GCATC	4 cut(s)	313, 1020, 1511, 1600
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	1476
SmlI	CTYRAG	1 cut(s)	1148
SmoI	CTYRAG	1 cut(s)	1148
SpeI	ACTAGT	1 cut(s)	1082
Sse9I	AATT	9 cut(s)	212, 679, 695, 769, 1002, 1067, 1381, 1631, 1664
SsiI	CCGC	2 cut(s)	60, 351
SspMI	CTAG	3 cut(s)	657, 756, 1083
StyD4I	CCNGG	2 cut(s)	206, 670
StyI	CCWWGG	2 cut(s)	924, 1673
TaaI	ACNGT	4 cut(s)	385, 976, 1441, 1447
TaiI	ACGT	1 cut(s)	1476
TasI	AATT	9 cut(s)	212, 679, 695, 769, 1002, 1067, 1381, 1631, 1664
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	8 cut(s)	103, 501, 633, 896, 1007, 1160, 1190, 1208
Tru1I	TTAA	4 cut(s)	191, 443, 575, 1149
Tru9I	TTAA	4 cut(s)	191, 443, 575, 1149
TscAI	CASTG	3 cut(s)	341, 795, 1425
TseFI	GTSAC	7 cut(s)	77, 293, 834, 1441, 1469, 1523, 1625
TseI	GCWGC	2 cut(s)	731, 1705
Tsp45I	GTSAC	7 cut(s)	77, 293, 834, 1441, 1469, 1523, 1625
TspRI	CASTG	3 cut(s)	341, 795, 1425
Van91I	CCANNNNNTGG	1 cut(s)	1516
Vha464I	CTTAAG	1 cut(s)	1148
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	4 cut(s)	212, 679, 695, 1664
XceI	RCATGY	2 cut(s)	29, 1245
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1271, 1517
XspI	CTAG	3 cut(s)	657, 756, 1083
Zsp2I	ATGCAT	1 cut(s)	1615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.