RLG00000021603

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014778
Physical Location & Seq
Forward (+)
76690811 .. 76692418
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021603

Sequence Viewer

Length: 1479 bp
ATGGAGAAGCTGAGAGGTACAGGGCATGCGTGCAAGCTCTGTGGTCAGAGTTGCGTGAGCGGCAAGGTCTTGGGAGGTCACATGAGGTCTCACGCGTTCAAGAATACGATCAAGTCAAGTAGAAAGCACAAGAAAGCCAACATGGGTTTTCAAGATGACGGCGACGGCAATGTGGGTTATGGCCTGAGATTAAACCCCAAAAGGTCCTGGAAATTTTCAGGCAAAGAAGAGGAAGAAGAGATTGTGTGCAAGGTTTGTGGAAAAGCGTTTGAGAGAAAGAACGCTCTTTTTGGTCACATGAGGCATCACTCGGTGAAGCAGAGGAATGAGGTTCAGTGGTGCAGAGATTGCGGTAAAGGGTTTGAGTCTTTGAAAGCTTTGAGTGTTCATAGGAGAGTTCATGCAAAAAGATTGAAGGGTTTTGATGAAACAGAGAGGGGTTTAACCCAGAAGCTTTGCATTGAGAGTTTGGGGTTGGTGAGGAAGAAAAGATCTGCAAGATTCAGGTACAGGATTGCTTCTCCTAGTTCTTCATTTTCTGGTTTGAATTTGAGTGAGTGTAAATTTGGTAATGGGTGTGGAGTGGATGTAGAAGAAGCTGCTTTCTGCTTGATGATGATCTCTAGGGGTTTAGGGAATTGGGGTCAGATTGGTTCAGTGGCTGAGTCCTCAAATAACAACTCGTTTTCTGTTGAGGTTGAGTCACCGAGTCAAAGGAAGCGAGTTAGGGACAATGAGGGTGGGGTTTTTGCTTGTGATGGTGATGAGATGCCTAAATCTGGGTTTGTGTTATATGGTATTGAAGAATTGGATGTGGAAACTAGTGAGGAGGAAGTAGAAGTGGGTTTATCAGGTTTGGGGTCCATGAAGTTTGGTTTGAGCAGGAAGGCTGTGCTTAAGGCTTGTGATTCTGTGAACAAGGGCTTGTATGCTACTGAATCTGAAACCTTTGCTGATTCTGAGAAGAAAAGAGAACACAAGTGCAGGATATGCAGAAGGGTTTTCGGCACCCCTCAGGCACTTGGAGGCCACCAGAGAGTTCATAAGAGAAGTTACAAAAGCTTACTGTTGAAGAATGAGGATGGTGAAGATAGAACTCAGATTGGCACACTTTGTGAGACTGAGGACAATTGCAATCCTGCCAAGCTTGAAAGTAGTGATAACTCAGTGGAGCAGGAGATGGAAACTCTGACTGTGGGAGGTTCTGAGAGGAAGGGTCACGTGTGTGGTATCTGCTTGAAGGTTTTTGCATCAGGCCAAGCTTTGGGTGGTCACAAGAGGTGTCATTATGTCAAAGACTCGGTGATAGCCACAGATAAGACCAGAGTAATGGAGCAACAGATTTCTGATATCTGTGATGCATTTGAAGTCAGTCACCAATTGAAACTTCAGGAGGAGAATGATGGTGTTGAATTCAAGCCATGGTGGGCTGGAACTGAACAAAAGCATGAGCTGCTGGTGGGTTTGATCCCCAACTAA

Protein Analysis

493

Amino Acids

54.67

Weight (kDa)

8.61

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 407 - 430 3.4e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47240
malus_domestica MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica Prupe.3G257500_v2.0.a1
pyrus_communis pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis RchiOBHm_Chr2g0166281
rosa_laevigata RLG00000021603
rosa_multiflora Rmu_sc0024214.1_g000001
rosa_roxburghii Rroxscaffold_2G00085020
rosa_rugosa Rorug02G0521800
rosa_samantha Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana Rw2G049000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1007
AccB7I CCANNNNNTGG 1 cut(s) 1264
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 60, 351
AclWI GGATC 1 cut(s) 1462
AcsI RAATTY 4 cut(s) 212, 547, 563, 1412
AcuI CTGAAG 1 cut(s) 1373
AcvI CACGTG 1 cut(s) 1222
AdeI CACNNNGTG 2 cut(s) 313, 1115
AfaI GTAC 2 cut(s) 19, 509
AfiI CCNNNNNNNGG 2 cut(s) 779, 1264
AflII CTTAAG 1 cut(s) 896
AflIII ACRYGT 2 cut(s) 93, 1221
AhlI ACTAGT 1 cut(s) 821
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 1371, 1403
AleI CACNNNNGTG 1 cut(s) 1224
AluBI AGCT 9 cut(s) 10, 37, 377, 454, 599, 1062, 1147, 1262, 1453
AluI AGCT 9 cut(s) 10, 37, 377, 454, 599, 1062, 1147, 1262, 1453
Alw26I GTCTC 2 cut(s) 93, 1112
AlwI GGATC 1 cut(s) 1462
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 3 cut(s) 181, 1027, 1255
ApeKI GCWGC 2 cut(s) 599, 1453
ApoI RAATTY 4 cut(s) 212, 547, 563, 1412
AspS9I GGNCC 2 cut(s) 204, 861
AsuHPI GGTGA 7 cut(s) 325, 490, 696, 773, 1097, 1315, 1367
AvaII GGWCC 2 cut(s) 204, 861
AxyI CCTNAGG 1 cut(s) 1014
BanI GGYRCC 1 cut(s) 1007
BbrPI CACGTG 1 cut(s) 1222
BbvI GCAGC 2 cut(s) 586, 1440
BccI CCATC 4 cut(s) 752, 1076, 1174, 1397
BceAI ACGGC 2 cut(s) 175, 181
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 93, 1112
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 3 cut(s) 525, 624, 822
BfrI CTTAAG 1 cut(s) 896
BglII AGATCT 1 cut(s) 491
BisI GCNGC 3 cut(s) 61, 600, 1454
BlsI GCNGC 3 cut(s) 62, 601, 1455
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 204, 861
BmgT120I GGNCC 2 cut(s) 204, 861
BmiI GGNNCC 2 cut(s) 862, 1009
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 4 cut(s) 313, 759, 1259, 1348
BsaAI YACGTR 1 cut(s) 1222
BsaBI GATNNNNATC 1 cut(s) 617
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 1421
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 779, 1264
Bse21I CCTNAGG 1 cut(s) 1014
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 1421
BseGI GGATG 3 cut(s) 592, 817, 1087
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 2 cut(s) 779, 1264
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 8 cut(s) 176, 654, 951, 1028, 1112, 1113, 1179, 1197
BseRI GAGGAG 2 cut(s) 842, 1409
BseXI GCAGC 2 cut(s) 586, 1440
BsgI GTGCAG 2 cut(s) 361, 1003
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 3 cut(s) 183, 1029, 1257
BshNI GGYRCC 1 cut(s) 1007
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 2 cut(s) 779, 1264
BsmAI GTCTC 2 cut(s) 93, 1112
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 3 cut(s) 183, 1029, 1257
Bso31I GGTCTC 1 cut(s) 93
Bsp143I GATC 4 cut(s) 108, 491, 618, 1467
Bsp19I CCATGG 1 cut(s) 1421
BspACI CCGC 2 cut(s) 60, 351
BspANI GGCC 3 cut(s) 183, 1029, 1257
BspCNI CTCAG 8 cut(s) 177, 655, 952, 1027, 1111, 1114, 1178, 1198
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 862, 1009
BspPI GGATC 1 cut(s) 1462
BspT107I GGYRCC 1 cut(s) 1007
BspTI CTTAAG 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 1421
BssMI GATC 4 cut(s) 108, 491, 618, 1467
BssT1I CCWWGG 1 cut(s) 1421
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 1068, 1195
Bst6I CTCTTC 2 cut(s) 222, 231
BstAFI CTTAAG 1 cut(s) 896
BstAPI GCANNNNNTGC 3 cut(s) 348, 990, 1453
BstBAI YACGTR 1 cut(s) 1222
BstC8I GCNNGC 3 cut(s) 27, 31, 35
BstDEI CTNAG 9 cut(s) 11, 185, 663, 960, 1014, 1098, 1122, 1165, 1206
BstDSI CCRYGG 1 cut(s) 1421
BstF5I GGATG 3 cut(s) 592, 817, 1087
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 4 cut(s) 111, 494, 621, 1470
BstMAI GTCTC 2 cut(s) 93, 1112
BstMBI GATC 4 cut(s) 108, 491, 618, 1467
BstMWI GCNNNNNNNGC 4 cut(s) 60, 348, 990, 1453
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 586, 1440
BstX2I RGATCY 1 cut(s) 491
BstXI CCANNNNNNTGG 1 cut(s) 1330
BstYI RGATCY 1 cut(s) 491
Bsu36I CCTNAGG 1 cut(s) 1014
BsuRI GGCC 3 cut(s) 183, 1029, 1257
BtgI CCRYGG 1 cut(s) 1421
BtsCI GGATG 3 cut(s) 592, 817, 1087
BtsIMutI CAGTG 3 cut(s) 341, 663, 1173
Cac8I GCNNGC 3 cut(s) 27, 31, 35
CaiI CAGNNNCTG 1 cut(s) 662
Cfr13I GGNCC 2 cut(s) 204, 861
Csp6I GTAC 2 cut(s) 18, 508
CspCI CAANNNNNGTGG 6 cut(s) 22, 57, 238, 273, 721, 756
CviAII CATG 8 cut(s) 26, 82, 142, 298, 401, 865, 1422, 1448
CviQI GTAC 2 cut(s) 18, 508
DdeI CTNAG 9 cut(s) 11, 185, 663, 960, 1014, 1098, 1122, 1165, 1206
DpnI GATC 4 cut(s) 110, 493, 620, 1469
DpnII GATC 4 cut(s) 108, 491, 618, 1467
DraIII CACNNNGTG 2 cut(s) 313, 1115
Eam1104I CTCTTC 2 cut(s) 222, 231
EarI CTCTTC 2 cut(s) 222, 231
Eco130I CCWWGG 1 cut(s) 1421
Eco31I GGTCTC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 1351
Eco47I GGWCC 2 cut(s) 204, 861
Eco57I CTGAAG 1 cut(s) 1373
Eco72I CACGTG 1 cut(s) 1222
Eco81I CCTNAGG 1 cut(s) 1014
EcoO109I RGGNCCY 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 1412
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 1351
EcoT14I CCWWGG 1 cut(s) 1421
EcoT22I ATGCAT 1 cut(s) 1363
ErhI CCWWGG 1 cut(s) 1421
FaeI CATG 8 cut(s) 29, 85, 145, 301, 404, 868, 1425, 1451
FaqI GGGAC 1 cut(s) 743
FatI CATG 8 cut(s) 25, 81, 141, 297, 400, 864, 1421, 1447
Fnu4HI GCNGC 3 cut(s) 61, 600, 1454
FokI GGATG 3 cut(s) 599, 824, 1094
Fsp4HI GCNGC 3 cut(s) 61, 600, 1454
FspBI CTAG 3 cut(s) 525, 624, 822
GluI GCNGC 3 cut(s) 61, 600, 1454
HaeIII GGCC 3 cut(s) 183, 1029, 1257
Hin1II CATG 8 cut(s) 29, 85, 145, 301, 404, 868, 1425, 1451
HindIII AAGCTT 5 cut(s) 375, 452, 1060, 1145, 1260
HinfI GANTC 9 cut(s) 365, 501, 665, 701, 709, 908, 938, 956, 1298
HphI GGTGA 7 cut(s) 325, 490, 696, 773, 1097, 1315, 1367
Hpy166II GTNNAC 1 cut(s) 916
Hpy188I TCNGA 8 cut(s) 48, 648, 943, 961, 1101, 1191, 1207, 1348
Hpy188III TCNNGA 3 cut(s) 100, 152, 1391
Hpy8I GTNNAC 1 cut(s) 916
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 5 cut(s) 409, 880, 990, 1207, 1234
HpyCH4III ACNGT 2 cut(s) 1068, 1195
HpyCH4IV ACGT 1 cut(s) 1221
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 348, 990, 1453
HpyF3I CTNAG 9 cut(s) 11, 185, 663, 960, 1014, 1098, 1122, 1165, 1206
HpySE526I ACGT 1 cut(s) 1221
Hsp92II CATG 8 cut(s) 29, 85, 145, 301, 404, 868, 1425, 1451
Kzo9I GATC 4 cut(s) 108, 491, 618, 1467
LmnI GCTCC 2 cut(s) 1171, 1333
Lsp1109I GCAGC 2 cut(s) 586, 1440
LweI GCATC 4 cut(s) 313, 759, 1259, 1348
MaeI CTAG 3 cut(s) 525, 624, 822
MaeII ACGT 1 cut(s) 1221
MaeIII GTNAC 7 cut(s) 77, 293, 702, 1052, 1217, 1271, 1373
MalI GATC 4 cut(s) 110, 493, 620, 1469
MbiI CCGCTC 1 cut(s) 60
MboI GATC 4 cut(s) 108, 491, 618, 1467
MfeI CAATTG 2 cut(s) 1129, 1379
MflI RGATCY 1 cut(s) 491
MluCI AATT 8 cut(s) 212, 547, 563, 637, 806, 1129, 1379, 1412
MluI ACGCGT 1 cut(s) 93
MlyI GAGTC 5 cut(s) 374, 674, 710, 718, 1292
Mph1103I ATGCAT 1 cut(s) 1363
MseI TTAA 3 cut(s) 191, 443, 897
MslI CAYNNNNRTG 1 cut(s) 1224
MspCI CTTAAG 1 cut(s) 896
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 2 cut(s) 1129, 1379
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 60, 348, 990, 1453
NcoI CCATGG 1 cut(s) 1421
NdeII GATC 4 cut(s) 108, 491, 618, 1467
NlaIII CATG 8 cut(s) 29, 85, 145, 301, 404, 868, 1425, 1451
NlaIV GGNNCC 2 cut(s) 862, 1009
NmuCI GTSAC 6 cut(s) 77, 293, 702, 1217, 1271, 1373
NsiI ATGCAT 1 cut(s) 1363
NspI RCATGY 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 1224
PaeI GCATGC 1 cut(s) 29
PfeI GAWTC 4 cut(s) 501, 908, 938, 956
PflMI CCANNNNNTGG 1 cut(s) 1264
PfoI TCCNGGA 1 cut(s) 206
PkrI GCNGC 3 cut(s) 62, 601, 1455
PleI GAGTC 5 cut(s) 373, 673, 709, 717, 1292
PmaCI CACGTG 1 cut(s) 1222
PmlI CACGTG 1 cut(s) 1222
PpsI GAGTC 5 cut(s) 373, 673, 709, 717, 1292
Ppu21I YACGTR 1 cut(s) 1222
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 206
PspCI CACGTG 1 cut(s) 1222
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 862, 1009
PspPI GGNCC 2 cut(s) 204, 861
PspPPI RGGWCCY 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 491
RsaI GTAC 2 cut(s) 19, 509
RsaNI GTAC 2 cut(s) 18, 508
RseI CAYNNNNRTG 1 cut(s) 1224
SaqAI TTAA 3 cut(s) 191, 443, 897
SatI GCNGC 3 cut(s) 61, 600, 1454
Sau3AI GATC 4 cut(s) 108, 491, 618, 1467
Sau96I GGNCC 2 cut(s) 204, 861
SchI GAGTC 5 cut(s) 374, 674, 710, 718, 1292
ScrFI CCNGG 1 cut(s) 208
SfaNI GCATC 4 cut(s) 313, 759, 1259, 1348
SinI GGWCC 2 cut(s) 204, 861
SmiMI CAYNNNNRTG 1 cut(s) 1224
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
SpeI ACTAGT 1 cut(s) 821
SphI GCATGC 1 cut(s) 29
Sse9I AATT 8 cut(s) 212, 547, 563, 637, 806, 1129, 1379, 1412
SsiI CCGC 2 cut(s) 60, 351
SspMI CTAG 3 cut(s) 525, 624, 822
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 1421
TaaI ACNGT 2 cut(s) 1068, 1195
TaiI ACGT 1 cut(s) 1224
TasI AATT 8 cut(s) 212, 547, 563, 637, 806, 1129, 1379, 1412
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 4 cut(s) 501, 908, 938, 956
Tru1I TTAA 3 cut(s) 191, 443, 897
Tru9I TTAA 3 cut(s) 191, 443, 897
TscAI CASTG 3 cut(s) 341, 663, 1173
TseFI GTSAC 6 cut(s) 77, 293, 702, 1217, 1271, 1373
TseI GCWGC 2 cut(s) 599, 1453
Tsp45I GTSAC 6 cut(s) 77, 293, 702, 1217, 1271, 1373
TspDTI ATGAA 6 cut(s) 377, 389, 441, 522, 881, 1031
TspRI CASTG 3 cut(s) 341, 663, 1173
Van91I CCANNNNNTGG 1 cut(s) 1264
Vha464I CTTAAG 1 cut(s) 896
VpaK11BI GGWCC 2 cut(s) 204, 861
XapI RAATTY 4 cut(s) 212, 547, 563, 1412
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 1265
XspI CTAG 3 cut(s) 525, 624, 822
Zsp2I ATGCAT 1 cut(s) 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.