SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 42 - 112 | 2.8e-23 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 225 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 398 |
| AcoI | YGGCCR | 1 cut(s) | 326 |
| AcsI | RAATTY | 1 cut(s) | 259 |
| AcuI | CTGAAG | 2 cut(s) | 59, 222 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 398 |
| AgsI | TTSAA | 1 cut(s) | 114 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AjnI | CCWGG | 1 cut(s) | 391 |
| AleI | CACNNNNGTG | 1 cut(s) | 203 |
| AluBI | AGCT | 1 cut(s) | 124 |
| AluI | AGCT | 1 cut(s) | 124 |
| AoxI | GGCC | 1 cut(s) | 326 |
| ApoI | RAATTY | 1 cut(s) | 259 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 357 |
| AspS9I | GGNCC | 1 cut(s) | 147 |
| AsuHPI | GGTGA | 1 cut(s) | 84 |
| AvaII | GGWCC | 1 cut(s) | 147 |
| BbsI | GAAGAC | 1 cut(s) | 93 |
| BccI | CCATC | 3 cut(s) | 299, 313, 398 |
| BciT130I | CCWGG | 1 cut(s) | 393 |
| BfaI | CTAG | 2 cut(s) | 33, 240 |
| BfmI | CTRYAG | 1 cut(s) | 372 |
| BfuAI | ACCTGC | 1 cut(s) | 225 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 393 |
| Bme1390I | CCNGG | 1 cut(s) | 393 |
| Bme18I | GGWCC | 1 cut(s) | 147 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmgT120I | GGNCC | 1 cut(s) | 147 |
| BmrFI | CCNGG | 1 cut(s) | 393 |
| BmsI | GCATC | 4 cut(s) | 50, 71, 268, 286 |
| BpiI | GAAGAC | 1 cut(s) | 93 |
| BsaJI | CCNNGG | 2 cut(s) | 150, 267 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 357, 387, 393, 423 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 398 |
| BseBI | CCWGG | 1 cut(s) | 393 |
| BseDI | CCNNGG | 2 cut(s) | 150, 267 |
| BseGI | GGATG | 1 cut(s) | 310 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BseMII | CTCAG | 2 cut(s) | 243, 323 |
| BshFI | GGCC | 1 cut(s) | 328 |
| BslFI | GGGAC | 2 cut(s) | 148, 382 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BsmFI | GGGAC | 2 cut(s) | 148, 382 |
| BsnI | GGCC | 1 cut(s) | 328 |
| BspANI | GGCC | 1 cut(s) | 328 |
| BspCNI | CTCAG | 2 cut(s) | 242, 324 |
| BspMI | ACCTGC | 1 cut(s) | 225 |
| BspQI | GCTCTTC | 2 cut(s) | 31, 131 |
| BssECI | CCNNGG | 2 cut(s) | 150, 267 |
| BssT1I | CCWWGG | 2 cut(s) | 150, 267 |
| Bst2UI | CCWGG | 1 cut(s) | 393 |
| Bst4CI | ACNGT | 2 cut(s) | 99, 373 |
| Bst6I | CTCTTC | 3 cut(s) | 31, 131, 187 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 296 |
| BstDEI | CTNAG | 2 cut(s) | 229, 332 |
| BstF5I | GGATG | 1 cut(s) | 310 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 38, 287, 296, 393 |
| BstNI | CCWGG | 1 cut(s) | 393 |
| BstSCI | CCNGG | 1 cut(s) | 391 |
| BstSFI | CTRYAG | 1 cut(s) | 372 |
| BstV2I | GAAGAC | 1 cut(s) | 93 |
| BsuRI | GGCC | 1 cut(s) | 328 |
| BtgZI | GCGATG | 1 cut(s) | 94 |
| BtsCI | GGATG | 1 cut(s) | 310 |
| BtsIMutI | CAGTG | 2 cut(s) | 198, 329 |
| BveI | ACCTGC | 1 cut(s) | 225 |
| Cfr13I | GGNCC | 1 cut(s) | 147 |
| CseI | GACGC | 1 cut(s) | 182 |
| CviAII | CATG | 1 cut(s) | 144 |
| CviJI | RGCY | 4 cut(s) | 124, 138, 246, 328 |
| CviKI_1 | RGCY | 4 cut(s) | 124, 138, 246, 328 |
| DdeI | CTNAG | 2 cut(s) | 229, 332 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| EaeI | YGGCCR | 1 cut(s) | 326 |
| Eam1104I | CTCTTC | 3 cut(s) | 31, 131, 187 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 3 cut(s) | 31, 131, 187 |
| Eco130I | CCWWGG | 2 cut(s) | 150, 267 |
| Eco47I | GGWCC | 1 cut(s) | 147 |
| Eco57I | CTGAAG | 2 cut(s) | 59, 222 |
| EcoRII | CCWGG | 1 cut(s) | 391 |
| EcoT14I | CCWWGG | 2 cut(s) | 150, 267 |
| ErhI | CCWWGG | 2 cut(s) | 150, 267 |
| FaeI | CATG | 1 cut(s) | 147 |
| FaiI | YATR | 6 cut(s) | 145, 189, 212, 219, 302, 421 |
| FaqI | GGGAC | 2 cut(s) | 148, 382 |
| FatI | CATG | 1 cut(s) | 143 |
| FokI | GGATG | 1 cut(s) | 317 |
| FspBI | CTAG | 2 cut(s) | 33, 240 |
| HaeIII | GGCC | 1 cut(s) | 328 |
| HgaI | GACGC | 1 cut(s) | 182 |
| Hin1II | CATG | 1 cut(s) | 147 |
| HincII | GTYRAC | 1 cut(s) | 21 |
| HindII | GTYRAC | 1 cut(s) | 21 |
| HinfI | GANTC | 1 cut(s) | 227 |
| HpaI | GTTAAC | 1 cut(s) | 21 |
| HphI | GGTGA | 1 cut(s) | 84 |
| Hpy166II | GTNNAC | 2 cut(s) | 21, 92 |
| Hpy188I | TCNGA | 1 cut(s) | 134 |
| Hpy188III | TCNNGA | 2 cut(s) | 240, 350 |
| Hpy8I | GTNNAC | 2 cut(s) | 21, 92 |
| Hpy99I | CGWCG | 1 cut(s) | 134 |
| HpyAV | CCTTC | 1 cut(s) | 398 |
| HpyCH4III | ACNGT | 2 cut(s) | 99, 373 |
| HpyCH4V | TGCA | 1 cut(s) | 290 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 38, 287, 296, 393 |
| HpyF3I | CTNAG | 2 cut(s) | 229, 332 |
| Hsp92II | CATG | 1 cut(s) | 147 |
| KspAI | GTTAAC | 1 cut(s) | 21 |
| LguI | GCTCTTC | 2 cut(s) | 31, 131 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 6 cut(s) | 33, 179, 216, 220, 378, 405 |
| LweI | GCATC | 4 cut(s) | 50, 71, 268, 286 |
| MaeI | CTAG | 2 cut(s) | 33, 240 |
| MaeIII | GTNAC | 2 cut(s) | 196, 205 |
| MboII | GAAGA | 8 cut(s) | 48, 93, 96, 99, 102, 118, 174, 284 |
| MluCI | AATT | 2 cut(s) | 66, 259 |
| MlyI | GAGTC | 1 cut(s) | 221 |
| MmeI | TCCRAC | 1 cut(s) | 112 |
| MnlI | CCTC | 6 cut(s) | 128, 187, 236, 327, 359, 393 |
| MroXI | GAANNNNTTC | 1 cut(s) | 357 |
| MseI | TTAA | 2 cut(s) | 20, 411 |
| MslI | CAYNNNNRTG | 1 cut(s) | 203 |
| MspR9I | CCNGG | 1 cut(s) | 393 |
| MvaI | CCWGG | 1 cut(s) | 393 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 38, 287, 296, 393 |
| NlaIII | CATG | 1 cut(s) | 147 |
| NmuCI | GTSAC | 2 cut(s) | 196, 205 |
| OliI | CACNNNNGTG | 1 cut(s) | 203 |
| PciSI | GCTCTTC | 2 cut(s) | 31, 131 |
| PdmI | GAANNNNTTC | 1 cut(s) | 357 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 398 |
| PleI | GAGTC | 1 cut(s) | 221 |
| PpsI | GAGTC | 1 cut(s) | 221 |
| Psp6I | CCWGG | 1 cut(s) | 391 |
| PspGI | CCWGG | 1 cut(s) | 391 |
| PspPI | GGNCC | 1 cut(s) | 147 |
| RseI | CAYNNNNRTG | 1 cut(s) | 203 |
| SapI | GCTCTTC | 2 cut(s) | 31, 131 |
| SaqAI | TTAA | 2 cut(s) | 20, 411 |
| Sau96I | GGNCC | 1 cut(s) | 147 |
| SchI | GAGTC | 1 cut(s) | 221 |
| ScrFI | CCNGG | 1 cut(s) | 393 |
| SetI | ASST | 3 cut(s) | 126, 198, 239 |
| SfaNI | GCATC | 4 cut(s) | 50, 71, 268, 286 |
| SfcI | CTRYAG | 1 cut(s) | 372 |
| SinI | GGWCC | 1 cut(s) | 147 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 203 |
| Sse9I | AATT | 2 cut(s) | 66, 259 |
| SspMI | CTAG | 2 cut(s) | 33, 240 |
| StyD4I | CCNGG | 1 cut(s) | 391 |
| StyI | CCWWGG | 2 cut(s) | 150, 267 |
| TaaI | ACNGT | 2 cut(s) | 99, 373 |
| TaqI | TCGA | 1 cut(s) | 351 |
| TasI | AATT | 2 cut(s) | 66, 259 |
| Tru1I | TTAA | 2 cut(s) | 20, 411 |
| Tru9I | TTAA | 2 cut(s) | 20, 411 |
| TscAI | CASTG | 2 cut(s) | 205, 336 |
| TseFI | GTSAC | 2 cut(s) | 196, 205 |
| Tsp45I | GTSAC | 2 cut(s) | 196, 205 |
| TspRI | CASTG | 2 cut(s) | 205, 336 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 398 |
| VpaK11BI | GGWCC | 1 cut(s) | 147 |
| XapI | RAATTY | 1 cut(s) | 259 |
| XbaI | TCTAGA | 1 cut(s) | 239 |
| XmnI | GAANNNNTTC | 1 cut(s) | 357 |
| XspI | CTAG | 2 cut(s) | 33, 240 |