FvH4_7g04160

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
4791193 .. 4793394
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04160.t1

Sequence Viewer

Length: 1851 bp
ATGATCAAGGTCAGTCTACCTGTTCCTGCAGCACGATTCATTATTGGTCTAGTTCTTGGTTTATGCTGTGTAGCTTTCCATGCTAAGGGTCATCAACACTGTCAGCCTTCATCTTGCGGCGACATCGGTAATATAAGTTACCCTTTCCGACTCATCGGTGATCCACAGAAGTGCGGTGACTTCAGGTATAACCTGTCTTGCGAGAACAATCTCACTGTTGTACACTTGCATTCTGTAAGATACTATGTCCTTGCCATCAATTATAAAAACTGCACGATCCGAGTTGTGGATGCCAATTTTCAAAAGGATAACTGCTCTTCACTCCCTCCTTATTCCTTGACTAGATACAACTTCAGTAGTGATGAGGATCCGTATCGCATGTATCAACTTTATCGGACAGGTACAATTGTTTGGAGTAGTCATCGGTTACTGTCAAAGCCTATAATTCTCATGACCTGTAAATTTCGGCCGGGGAATTCATCCCTCTTTGTTGATGCTGCTCCTTGCATCAACGCAACGAGTGGACATTCCTTTGTTAACACTGACAGCTTAAATGCATCGGATTTGTTAGATTCATGCCAGACGGAGCTGATGGTTTTGACATCATGGAATGGAACAAAAGTTGTGAACAGGTCCTACATAGACATCCACAACAAGCTGCTCTATGGTTTTGAACTTTCATGGTTGCACAATTACGGGCGACCAGTTGAAAAGACGCCACTCTTATCAATGTATGGCCTTATTGAAGATTTCTTGCAAAGTCACAATAACCTCATGCCAATAAGGTACTCCTACTACAATATCAAGAAAATGGCCAAAGGATTTAAGGACAAATTAGGGGAAGGAGGTTATGGCTGTGTGTATAAAGGAAAGCTCCGGAGCGGACGCCTTGTTGCTGTTAAGATGTTGGGAAAGTCCAAAGCTAATGGACAAGATTTTATAAATGAAGTTGCCACAATTGGAAGAATTCATCATGTAAATGTGGTGCAACTAATTGGCTATTGTGCTGAGGGATCAAAGCGTGCTCTTGTATACGAGTACATGGCAAACCGGTCTCTTGATAAGCACATTTTTTCTAAGGAAGGATCCATTTCCTTAAGCTGCAAGGAAACATTTGAAATTTCACTAGGAGTGGCTCGTGGTATTGGTTATCTGCATCAAGGATGTGACATGAAGATATTGCATTTTGATATCAAGCCACACAACATTCTTCTAGATGAGAATTTTGTTCCAAAGGTTTCAGACTTCGGTCTGGCTAGATTATGCCCATTAGATGACAGCAGTTTAATTTTGACTGCAGCTAGAGGAACCATTGGATACATAGCTCCGGAATTGTTTTACAAGAATATTGGTGGTGTGTCAAACAAAGCTGACATGTATAGTTTCGGAATGTTGCTGATGGAAATAGCAGGGAAAAGAAAGAACTTGAATGCAGTTGCAGCCCATTCTAGCCAAATTTACTTTCCTTCATGGGTTTATGACCAGTTCAGTGAAGGAAAGGAGATGGAAATTGAAGATGCGACCGACGAGGAAAAGAAATTAACAAAGAAGATGCTTATGGTAGCATTGTGGTGTATACAAATGAAGCCTAGTGACCGTCCTAAATCGATGAACAAAGTAGTAGAGTTTGGCTCAAAATCCAAAATAAGTGATGCAAGTGCAACACCAATAATATATGTATTTACAATGGAGCATCATCTAACTAATTTGTGGTCATTAGAGGTGGCACTCATCTCAGTGCCCTCCTTTCTCCTTGCTGTATATTGGTTCTTATGGTTTGATGTAGGAGCTCACTGTTCGTTATGCTCTTGCAACGTGTACGGGCTTAATGTCCCTTGGCAATTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

617

Amino Acids

69.35

Weight (kDa)

8.64

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 34 - 97 5.3e-16 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 275 - 535 2.1e-41 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 276 - 536 4.3e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66910 AT1G66910 AT1G66920 AT1G66920 AT1G66920 AT1G66930 AT1G66930 AT1G66930 AT1G67000 AT1G70250 AT4G18250 AT5G38240 AT5G38240 AT5G38240 AT5G38250 AT5G38260 AT5G38280 AT5G38280
fragaria_vesca FvH4_1g03330 FvH4_4g26890 FvH4_4g26891 FvH4_4g26892 FvH4_4g26892 FvH4_4g26892 FvH4_4g26893 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26950 FvH4_4g26961 FvH4_4g26961 FvH4_4g34450 FvH4_4g34450 FvH4_4g34450 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g22251 FvH4_6g01490 FvH4_6g01490 FvH4_6g01490 FvH4_6g01502 FvH4_6g23830 FvH4_6g28430 FvH4_6g28450 FvH4_6g47250 FvH4_6g52670 FvH4_7g04150 FvH4_7g04150 FvH4_7g04160 FvH4_7g04170 FvH4_7g05990 FvH4_7g06001 FvH4_7g06010 FvH4_7g06010 FvH4_7g06060 FvH4_7g20630 FvH4_7g20630
malus_domestica MD01G1059700.v1.1 MD02G1233600.v1.1 MD02G1234400.v1.1 MD02G1234900.v1.1 MD02G1235600.v1.1 MD02G1245700.v1.1 MD02G1245800.v1.1 MD02G1246200.v1.1 MD02G1246300.v1.1 MD02G1246700.v1.1 MD02G1246800.v1.1 MD02G1247100.v1.1 MD02G1247300.v1.1 MD02G1247400.v1.1 MD02G1249300.v1.1 MD02G1249500.v1.1 MD02G1249700.v1.1 MD02G1250000.v1.1 MD02G1250200.v1.1 MD02G1250800.v1.1 MD02G1251800.v1.1 MD02G1252600.v1.1 MD02G1253600.v1.1 MD02G1273500.v1.1 MD02G1274000.v1.1 MD02G1274500.v1.1 MD04G1233100.v1.1 MD06G1136000.v1.1 MD06G1136200.v1.1 MD06G1136300.v1.1 MD06G1218300.v1.1 MD06G1218500.v1.1 MD06G1218600.v1.1 MD06G1219100.v1.1 MD07G1070000.v1.1 MD07G1070400.v1.1 MD07G1070700.v1.1 MD07G1071000.v1.1 MD07G1071100.v1.1 MD07G1137900.v1.1 MD07G1138000.v1.1 MD09G1255100.v1.1 MD12G1250700.v1.1 MD12G1251100.v1.1 MD12G1251500.v1.1 MD13G1036700.v1.1 MD13G1037900.v1.1 MD13G1038000.v1.1 MD16G1037900.v1.1 MD16G1038000.v1.1 MD16G1038600.v1.1 MD16G1038700.v1.1 MD16G1039200.v1.1 MD16G1039300.v1.1 MD16G1039500.v1.1
prunus_persica Prupe.1G315000_v2.0.a1 Prupe.1G315000_v2.0.a1 Prupe.1G315100_v2.0.a1 Prupe.1G315300_v2.0.a1 Prupe.1G315400_v2.0.a1 Prupe.1G496900_v2.0.a1 Prupe.2G033400_v2.0.a1 Prupe.2G047500_v2.0.a1 Prupe.2G048700_v2.0.a1 Prupe.2G067100_v2.0.a1 Prupe.2G087100_v2.0.a1 Prupe.2G087500_v2.0.a1 Prupe.2G087800_v2.0.a1 Prupe.2G088100_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088800_v2.0.a1 Prupe.2G092500_v2.0.a1 Prupe.2G092800_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093100_v2.0.a1 Prupe.2G093200_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093400_v2.0.a1 Prupe.2G093500_v2.0.a1 Prupe.2G093600_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G103300_v2.0.a1 Prupe.2G103900_v2.0.a1 Prupe.2G312200_v2.0.a1 Prupe.3G145200_v2.0.a1 Prupe.3G145600_v2.0.a1 Prupe.3G145700_v2.0.a1 Prupe.3G145800_v2.0.a1 Prupe.3G145900_v2.0.a1 Prupe.3G146000_v2.0.a1 Prupe.3G146100_v2.0.a1 Prupe.3G146200_v2.0.a1 Prupe.3G146600_v2.0.a1 Prupe.5G223800_v2.0.a1 Prupe.6G137800_v2.0.a1 Prupe.6G138000_v2.0.a1 Prupe.6G141600_v2.0.a1 Prupe.6G141900_v2.0.a1 Prupe.6G142000_v2.0.a1 Prupe.6G142100_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G352800_v2.0.a1 Prupe.6G352800_v2.0.a1
pyrus_communis pycom01g08840 pycom01g08860 pycom01g08920 pycom01g08960 pycom01g08990 pycom01g09000 pycom02g20230 pycom02g21120 pycom02g21140 pycom02g21350 pycom02g21360 pycom02g21400 pycom02g21510 pycom02g23440 pycom02g23450 pycom02g23480 pycom02g23490 pycom04g20650 pycom04g20690 pycom04g20710 pycom04g20730 pycom06g12760 pycom06g19500 pycom06g19510 pycom06g19530 pycom06g19540 pycom06g19570 pycom12g23070 pycom12g23080 pycom12g23100 pycom13g03140 pycom13g03250 pycom13g03290 pycom13g03300 pycom14g19010 pycom16g03300 pycom16g03320 pycom16g03370 pycom16g03380 pycom16g03400 pycom17g24970 pycom17g25020 pycom17g25150 pycom17g25180 pycom17g25240 pycom17g25250
rosa_chinensis RchiOBHm_Chr1g0325081 RchiOBHm_Chr1g0325091 RchiOBHm_Chr1g0325111 RchiOBHm_Chr1g0325131 RchiOBHm_Chr1g0328221 RchiOBHm_Chr1g0328241 RchiOBHm_Chr1g0328281 RchiOBHm_Chr1g0328331 RchiOBHm_Chr1g0328371 RchiOBHm_Chr1g0328401 RchiOBHm_Chr1g0328481 RchiOBHm_Chr1g0328501 RchiOBHm_Chr1g0328591 RchiOBHm_Chr1g0328601 RchiOBHm_Chr1g0328751 RchiOBHm_Chr1g0329621 RchiOBHm_Chr1g0329631 RchiOBHm_Chr1g0333261 RchiOBHm_Chr1g0333291 RchiOBHm_Chr1g0333331 RchiOBHm_Chr1g0333351 RchiOBHm_Chr1g0333441 RchiOBHm_Chr1g0333481 RchiOBHm_Chr1g0333571 RchiOBHm_Chr1g0333611 RchiOBHm_Chr1g0334191 RchiOBHm_Chr1g0334281 RchiOBHm_Chr1g0334791 RchiOBHm_Chr1g0334801 RchiOBHm_Chr1g0334831 RchiOBHm_Chr1g0334841 RchiOBHm_Chr1g0384001 RchiOBHm_Chr2g0138701 RchiOBHm_Chr2g0166291 RchiOBHm_Chr2g0166311 RchiOBHm_Chr2g0166321 RchiOBHm_Chr3g0449131 RchiOBHm_Chr3g0449161 RchiOBHm_Chr3g0449331 RchiOBHm_Chr3g0449361 RchiOBHm_Chr3g0449381 RchiOBHm_Chr3g0482511 RchiOBHm_Chr3g0482521 RchiOBHm_Chr3g0482701 RchiOBHm_Chr4g0405811 RchiOBHm_Chr4g0434521 RchiOBHm_Chr4g0434661 RchiOBHm_Chr4g0434681 RchiOBHm_Chr4g0434701 RchiOBHm_Chr4g0434711 RchiOBHm_Chr5g0047441 RchiOBHm_Chr5g0047581 RchiOBHm_Chr5g0047621 RchiOBHm_Chr5g0047671 RchiOBHm_Chr5g0047761 RchiOBHm_Chr5g0047851 RchiOBHm_Chr5g0047981 RchiOBHm_Chr5g0048071 RchiOBHm_Chr5g0059221 RchiOBHm_Chr5g0059231 RchiOBHm_Chr5g0078441 RchiOBHm_Chr6g0264171 RchiOBHm_Chr6g0264401 RchiOBHm_Chr6g0264411 RchiOBHm_Chr6g0273031 RchiOBHm_Chr6g0283331 RchiOBHm_Chr7g0185621 RchiOBHm_Chr7g0185831 RchiOBHm_Chr7g0185841 RchiOBHm_Chr7g0185851 RchiOBHm_Chr7g0185861 RchiOBHm_Chr7g0185871 RchiOBHm_Chr7g0185881 RchiOBHm_Chr7g0185901 RchiOBHm_Chr7g0185911 RchiOBHm_Chr7g0185931 RchiOBHm_Chr7g0185951 RchiOBHm_Chr7g0185991 RchiOBHm_Chr7g0186011 RchiOBHm_Chr7g0201241 RchiOBHm_Chr7g0209921
rosa_laevigata RLG00000004874 RLG00000004876 RLG00000004878 RLG00000004879 RLG00000004880 RLG00000004881 RLG00000006656 RLG00000006657 RLG00000006659 RLG00000006666 RLG00000008822 RLG00000008823 RLG00000014282 RLG00000019268 RLG00000020174 RLG00000021604 RLG00000021605 RLG00000021606 RLG00000023348 RLG00000024362 RLG00000025836 RLG00000025838 RLG00000025848 RLG00000025849 RLG00000025850 RLG00000029421 RLG00000029464 RLG00000029467 RLG00000029469 RLG00000029470 RLG00000029471 RLG00000029547 RLG00000029552 RLG00000029603 RLG00000029604 RLG00000029612 RLG00000029613 RLG00000029617 RLG00000029920 RLG00000029923 RLG00000029924 RLG00000029927 RLG00000029930 RLG00000029933 RLG00000029941 RLG00000030158 RLG00000030159 RLG00000034494 RLG00000035280 RLG00000035281
rosa_multiflora Rmu_co8033562.1_g000001 Rmu_co8168632.1_g000001 Rmu_co8248815.1_g000001 Rmu_co8346553.1_g000001 Rmu_co8352941.1_g000001 Rmu_co8372625.1_g000001 Rmu_co8486819.1_g000001 Rmu_sc0000148.1_g000013 Rmu_sc0000148.1_g000033 Rmu_sc0000148.1_g000045 Rmu_sc0000148.1_g000075 Rmu_sc0000194.1_g000011 Rmu_sc0000194.1_g000015 Rmu_sc0000194.1_g000018 Rmu_sc0000215.1_g000021 Rmu_sc0000494.1_g000001 Rmu_sc0000494.1_g000016 Rmu_sc0000574.1_g000038 Rmu_sc0000574.1_g000040 Rmu_sc0000580.1_g000027 Rmu_sc0000580.1_g000029 Rmu_sc0000725.1_g000001 Rmu_sc0000725.1_g000002 Rmu_sc0000725.1_g000005 Rmu_sc0000725.1_g000019 Rmu_sc0000895.1_g000001 Rmu_sc0000982.1_g000004 Rmu_sc0000982.1_g000034 Rmu_sc0000982.1_g000035 Rmu_sc0000982.1_g000087 Rmu_sc0000982.1_g000107 Rmu_sc0001009.1_g000033 Rmu_sc0001009.1_g000036 Rmu_sc0001129.1_g000001 Rmu_sc0001200.1_g000018 Rmu_sc0001234.1_g000006 Rmu_sc0001349.1_g000008 Rmu_sc0001563.1_g000027 Rmu_sc0001563.1_g000028 Rmu_sc0001563.1_g000038 Rmu_sc0001563.1_g000046 Rmu_sc0001654.1_g000006 Rmu_sc0001654.1_g000007 Rmu_sc0001829.1_g000005 Rmu_sc0002107.1_g000004 Rmu_sc0002107.1_g000007 Rmu_sc0002107.1_g000008 Rmu_sc0002548.1_g000036 Rmu_sc0002955.1_g000013 Rmu_sc0002955.1_g000029 Rmu_sc0002965.1_g000002 Rmu_sc0002965.1_g000003 Rmu_sc0002965.1_g000017 Rmu_sc0002965.1_g000027 Rmu_sc0002965.1_g000028 Rmu_sc0002969.1_g000010 Rmu_sc0002983.1_g000033 Rmu_sc0003166.1_g000001 Rmu_sc0003441.1_g000001 Rmu_sc0003441.1_g000010 Rmu_sc0003441.1_g000011 Rmu_sc0003776.1_g000034 Rmu_sc0003776.1_g000035 Rmu_sc0004178.1_g000005 Rmu_sc0004241.1_g000010 Rmu_sc0004356.1_g000003 Rmu_sc0004470.1_g000014 Rmu_sc0004470.1_g000018 Rmu_sc0004538.1_g000009 Rmu_sc0004646.1_g000041 Rmu_sc0004736.1_g000001 Rmu_sc0004736.1_g000016 Rmu_sc0004736.1_g000020 Rmu_sc0004753.1_g000001 Rmu_sc0004753.1_g000012 Rmu_sc0004805.1_g000025 Rmu_sc0004874.1_g000010 Rmu_sc0005613.1_g000002 Rmu_sc0005665.1_g000006 Rmu_sc0005665.1_g000022 Rmu_sc0005665.1_g000024 Rmu_sc0005665.1_g000030 Rmu_sc0005665.1_g000032 Rmu_sc0005665.1_g000034 Rmu_sc0005665.1_g000036 Rmu_sc0005665.1_g000037 Rmu_sc0005665.1_g000039 Rmu_sc0005783.1_g000007 Rmu_sc0005899.1_g000014 Rmu_sc0006031.1_g000005 Rmu_sc0006031.1_g000008 Rmu_sc0006661.1_g000006 Rmu_sc0006959.1_g000006 Rmu_sc0006959.1_g000008 Rmu_sc0006959.1_g000013 Rmu_sc0007214.1_g000004 Rmu_sc0007477.1_g000006 Rmu_sc0007681.1_g000001 Rmu_sc0007681.1_g000005 Rmu_sc0008439.1_g000002 Rmu_sc0008439.1_g000006 Rmu_sc0009205.1_g000009 Rmu_sc0009205.1_g000024 Rmu_sc0009869.1_g000001 Rmu_sc0009881.1_g000003 Rmu_sc0013038.1_g000007 Rmu_sc0013038.1_g000010 Rmu_sc0016170.1_g000010 Rmu_sc0016170.1_g000016 Rmu_sc0016751.1_g000005 Rmu_sc0017361.1_g000001 Rmu_sc0021068.1_g000001 Rmu_sc0021282.1_g000001 Rmu_sc0024214.1_g000002 Rmu_sc0025695.1_g000001 Rmu_sc0028145.1_g000002 Rmu_sc0036877.1_g000001 Rmu_sc0038968.1_g000001 Rmu_ssc0000047.1_g000006 Rmu_ssc0000047.1_g000007 Rmu_ssc0000388.1_g000041
rosa_roxburghii Rroxscaffold_176G00431510 Rroxscaffold_176G00431520 Rroxscaffold_1G00021210 Rroxscaffold_1G00033850 Rroxscaffold_1G00033940 Rroxscaffold_2G00085010 Rroxscaffold_3G00227760 Rroxscaffold_3G00248800 Rroxscaffold_3G00268520 Rroxscaffold_3G00268550 Rroxscaffold_3G00268590 Rroxscaffold_3G00268600 Rroxscaffold_4G00316560 Rroxscaffold_4G00316920 Rroxscaffold_4G00316930 Rroxscaffold_4G00317380 Rroxscaffold_4G00317420 Rroxscaffold_4G00317550 Rroxscaffold_4G00317560 Rroxscaffold_4G00317640 Rroxscaffold_4G00317660 Rroxscaffold_4G00320870 Rroxscaffold_4G00320880 Rroxscaffold_4G00321480 Rroxscaffold_4G00321690 Rroxscaffold_4G00321890 Rroxscaffold_5G00350290 Rroxscaffold_5G00375840 Rroxscaffold_5G00375890 Rroxscaffold_5G00375910 Rroxscaffold_5G00375920 Rroxscaffold_6G00398920 Rroxscaffold_6G00399010 Rroxscaffold_6G00399320 Rroxscaffold_6G00415790 Rroxscaffold_6G00427220 Rroxscaffold_6G00427340 Rroxscaffold_7G00203530
rosa_rugosa Rorug01G0049600 Rorug01G0073600.1 Rorug01G0074600 Rorug01G0074900 Rorug01G0075000 Rorug01G0075100 Rorug01G0075400 Rorug01G0081300 Rorug01G0081400 Rorug01G0103400 Rorug01G0103500 Rorug01G0108300 Rorug01G0108400 Rorug01G0108600 Rorug01G0108700 Rorug01G0109300 Rorug01G0110000 Rorug01G0110600 Rorug01G0111900 Rorug01G0116400 Rorug01G0116500 Rorug01G0116900 Rorug01G0117000 Rorug02G0305700 Rorug02G0305900 Rorug02G0521800 Rorug02G0521900 Rorug02G0522000 Rorug02G0522000 Rorug02G0522100 Rorug02G0618100 Rorug02G0618200 Rorug02G0618500 Rorug02G0619900 Rorug02G0620000 Rorug02G0620100 Rorug02G0620200 Rorug03G0100200 Rorug03G0197900 Rorug04G0062400 Rorug04G0277100 Rorug04G0277500 Rorug04G0277500 Rorug04G0277600 Rorug04G0277600 Rorug04G0277700 Rorug05G0156000.1 Rorug05G0236300 Rorug05G0236300 Rorug05G0236300 Rorug05G0236500 Rorug05G0236600 Rorug06G0008000 Rorug06G0008100 Rorug06G0008400 Rorug06G0008500 Rorug06G0008600 Rorug06G0008700 Rorug06G0009400 Rorug06G0009500 Rorug06G0009600 Rorug06G0030300 Rorug06G0087000 Rorug06G0099800 Rorug06G0471600 Rorug06G0471600 Rorug06G0471700 Rorug07G0117400
rosa_samantha Rh1AG090600 Rh1AG092700 Rh1AG093100 Rh1AG093800 Rh1AG131300 Rh1AG131600 Rh1AG132000 Rh1AG133000 Rh1AG140900 Rh1AG165100 Rh1BG072500 Rh1BG074100 Rh1BG074300 Rh1BG074800 Rh1BG074900 Rh1BG100800 Rh1BG101000 Rh1BG101400 Rh1BG108200 Rh1CG095600 Rh1CG125200 Rh1CG125500 Rh1CG125800 Rh1CG132800 Rh1DG095200 Rh1DG095600 Rh1DG095700 Rh1DG096400 Rh1DG096900 Rh1DG097000 Rh1DG136700 Rh1DG137000 Rh1DG137200 Rh1DG137900 Rh1DG138200 Rh1DG138400 Rh1DG138800 Rh1DG139200 Rh1DG142400 Rh1DG145000 Rh2AG588100 Rh2BG460400 Rh2BG600100 Rh2CG571000 Rh2DG469800 Rh2DG610300 Rh3AG016800 Rh3AG249300 Rh3BG016900 Rh3BG017900 Rh3BG018000 Rh3CG016000 Rh3CG016900 Rh3CG017100 Rh3CG282700 Rh3DG017200 Rh3DG018200 Rh3DG018600 Rh3DG276000 Rh3DG278500 Rh4AG133800 Rh4AG332900 Rh4AG333100 Rh4AG334100 Rh4BG340600 Rh4BG340900 Rh4BG341800 Rh4CG355800 Rh4DG335900 Rh5CG351100 Rh5CG351300 Rh5CG351400 Rh5CG351700 Rh5CG351900 Rh5CG352200 Rh5CG421500 Rh6AG131900 Rh6AG265700 Rh6BG129100 Rh6CG124600 Rh6CG127100 Rh6CG267800 Rh6DG111300 Rh6DG114600 Rh7AG070800 Rh7AG251300 Rh7CG077200 Rh7CG077300 Rh7CG077500 Rh7CG268100 Rh7DG076900 Rh7DG077200 Rh7DG077300 Rh7DG077700 Rh7DG257700
rosa_wichuraiana Rw0G013150 Rw0G018000 Rw0G019300 Rw0G022850 Rw1G007090 Rw1G007130 Rw1G007160 Rw1G007210 Rw1G007770 Rw1G007850 Rw1G010720 Rw1G010780 Rw1G010860 Rw1G010890 Rw1G010900 Rw1G010950 Rw1G010960 Rw1G011020 Rw1G011060 Rw1G011100 Rw1G011420 Rw2G029200 Rw2G049010 Rw3G001260 Rw3G001370 Rw3G001400 Rw3G001430 Rw3G022340 Rw3G022510 Rw4G010890 Rw4G028850 Rw4G028930 Rw4G028950 Rw4G028970 Rw4G029040 Rw4G029060 Rw4G029080 Rw4G029100 Rw4G029110 Rw4G029120 Rw5G029450 Rw5G029480 Rw5G029570 Rw5G036350 Rw6G011290 Rw6G011310 Rw6G011530 Rw7G006420 Rw7G006430 Rw7G006460 Rw7G021320

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 264, 941
AccBSI CCGCTC 1 cut(s) 882
AccI GTMKAC 3 cut(s) 16, 1032, 1576
AccIII TCCGGA 2 cut(s) 876, 1327
AciI CCGC 3 cut(s) 117, 174, 882
AclWI GGATC 7 cut(s) 155, 271, 362, 375, 1021, 1080, 1093
AcoI YGGCCR 2 cut(s) 467, 813
AcsI RAATTY 6 cut(s) 461, 475, 966, 1119, 1222, 1455
AcuI CTGAAG 2 cut(s) 166, 337
AcyI GRCGYC 2 cut(s) 716, 886
AfaI GTAC 5 cut(s) 222, 403, 788, 1040, 1820
AfiI CCNNNNNNNGG 2 cut(s) 85, 286
AflII CTTAAG 1 cut(s) 1096
AflIII ACRYGT 2 cut(s) 1374, 1815
AgeI ACCGGT 1 cut(s) 1050
AgsI TTSAA 7 cut(s) 302, 674, 710, 746, 1118, 1429, 1514
AjuI GAANNNNNNNTTGG 2 cut(s) 1446, 1478
AleI CACNNNNGTG 1 cut(s) 169
Alw21I GWGCWC 2 cut(s) 1027, 1792
Alw26I GTCTC 1 cut(s) 1059
AlwI GGATC 7 cut(s) 155, 271, 362, 375, 1021, 1080, 1093
Aor13HI TCCGGA 2 cut(s) 876, 1327
AoxI GGCC 3 cut(s) 467, 736, 813
ApeKI GCWGC 6 cut(s) 29, 497, 658, 1101, 1298, 1439
ApoI RAATTY 6 cut(s) 461, 475, 966, 1119, 1222, 1455
AsiGI ACCGGT 1 cut(s) 1050
AspS9I GGNCC 1 cut(s) 633
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 2 cut(s) 170, 188
AvaII GGWCC 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 1743
BaeI ACNNNNGTAYC 2 cut(s) 393, 426
BalI TGGCCA 1 cut(s) 815
BamHI GGATCC 2 cut(s) 367, 1085
BanII GRGCYC 1 cut(s) 1792
BauI CACGAG 1 cut(s) 1137
Bbv12I GWGCWC 2 cut(s) 1027, 1792
BbvCI CCTCAGC 1 cut(s) 1008
BbvI GCAGC 6 cut(s) 41, 484, 645, 1088, 1310, 1451
BccI CCATC 4 cut(s) 263, 586, 1393, 1498
BciVI GTATCC 1 cut(s) 1310
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 1059
BfaI CTAG 8 cut(s) 50, 342, 1127, 1214, 1257, 1302, 1449, 1590
BfmI CTRYAG 2 cut(s) 27, 1296
BfrI CTTAAG 1 cut(s) 1096
BfuI GTATCC 1 cut(s) 1310
BisI GCNGC 7 cut(s) 30, 118, 498, 659, 1102, 1299, 1440
BlsI GCNGC 7 cut(s) 31, 119, 499, 660, 1103, 1300, 1441
Bme1390I CCNGG 1 cut(s) 471
Bme18I GGWCC 1 cut(s) 633
BmgT120I GGNCC 1 cut(s) 633
BmiI GGNNCC 3 cut(s) 369, 1087, 1309
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 9 cut(s) 280, 484, 516, 566, 1165, 1507, 1542, 1642, 1702
BoxI GACNNNNGTC 1 cut(s) 1248
BplI GAGNNNNNCTC 2 cut(s) 1616, 1648
Bpu10I CCTNAGC 2 cut(s) 84, 1008
BpuMI CCSGG 1 cut(s) 471
Bsa29I ATCGAT 1 cut(s) 1607
BsaBI GATNNNNATC 2 cut(s) 366, 372
BsaHI GRCGYC 2 cut(s) 716, 886
BsaI GGTCTC 1 cut(s) 1059
BsaJI CCNNGG 2 cut(s) 470, 1835
BsaWI WCCGGW 3 cut(s) 876, 1050, 1327
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 286
Bse118I RCCGGY 1 cut(s) 1050
Bse1I ACTGG 2 cut(s) 704, 1483
Bse8I GATNNNNATC 2 cut(s) 366, 372
BseAI TCCGGA 2 cut(s) 876, 1327
BseCI ATCGAT 1 cut(s) 1607
BseDI CCNNGG 2 cut(s) 470, 1835
BseGI GGATG 4 cut(s) 295, 479, 645, 1169
BseJI GATNNNNATC 2 cut(s) 366, 372
BseLI CCNNNNNNNGG 2 cut(s) 85, 286
BseMII CTCAG 2 cut(s) 999, 1749
BseNI ACTGG 2 cut(s) 704, 1483
BseSI GKGCMC 1 cut(s) 1743
BseX3I CGGCCG 1 cut(s) 467
BseXI GCAGC 6 cut(s) 41, 484, 645, 1088, 1310, 1451
BsgI GTGCAG 1 cut(s) 256
Bsh1285I CGRYCG 2 cut(s) 470, 1524
BshFI GGCC 3 cut(s) 469, 738, 815
BshTI ACCGGT 1 cut(s) 1050
BshVI ATCGAT 1 cut(s) 1607
BsiEI CGRYCG 2 cut(s) 470, 1524
BsiHKAI GWGCWC 2 cut(s) 1027, 1792
BsiSI CCGG 4 cut(s) 470, 877, 1051, 1328
BslFI GGGAC 1 cut(s) 1817
BslI CCNNNNNNNGG 2 cut(s) 85, 286
BsmAI GTCTC 1 cut(s) 1059
BsmFI GGGAC 1 cut(s) 1817
BsmI GAATGC 2 cut(s) 229, 1435
BsnI GGCC 3 cut(s) 469, 738, 815
Bso31I GGTCTC 1 cut(s) 1059
Bsp1286I GDGCHC 3 cut(s) 1027, 1743, 1792
Bsp13I TCCGGA 2 cut(s) 876, 1327
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 6 cut(s) 3, 160, 276, 367, 1013, 1085
BspACI CCGC 3 cut(s) 117, 174, 882
BspANI GGCC 3 cut(s) 469, 738, 815
BspCNI CTCAG 2 cut(s) 1000, 1748
BspDI ATCGAT 1 cut(s) 1607
BspEI TCCGGA 2 cut(s) 876, 1327
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 369, 1087, 1309
BspMAI CTGCAG 2 cut(s) 31, 1300
BspPI GGATC 7 cut(s) 155, 271, 362, 375, 1021, 1080, 1093
BspQI GCTCTTC 1 cut(s) 322
BspTI CTTAAG 1 cut(s) 1096
BspTNI GGTCTC 1 cut(s) 1059
BsrBI CCGCTC 1 cut(s) 882
BsrFI RCCGGY 1 cut(s) 1050
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 2 cut(s) 704, 1483
BssAI RCCGGY 1 cut(s) 1050
BssECI CCNNGG 2 cut(s) 470, 1835
BssMI GATC 6 cut(s) 3, 160, 276, 367, 1013, 1085
BssNAI GTATAC 2 cut(s) 1033, 1577
BssNI GRCGYC 2 cut(s) 716, 886
BssSI CACGAG 1 cut(s) 1137
BssT1I CCWWGG 1 cut(s) 1835
Bst1107I GTATAC 2 cut(s) 1033, 1577
Bst2BI CACGAG 1 cut(s) 1137
Bst4CI ACNGT 5 cut(s) 101, 217, 432, 1598, 1796
Bst6I CTCTTC 1 cut(s) 322
BstACI GRCGYC 2 cut(s) 716, 886
BstAFI CTTAAG 1 cut(s) 1096
BstAUI TGTACA 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 1023
BstDEI CTNAG 4 cut(s) 84, 1008, 1077, 1735
BstF5I GGATG 4 cut(s) 295, 479, 645, 1169
BstKTI GATC 6 cut(s) 6, 163, 279, 370, 1016, 1088
BstMAI GTCTC 1 cut(s) 1059
BstMBI GATC 6 cut(s) 3, 160, 276, 367, 1013, 1085
BstMCI CGRYCG 2 cut(s) 470, 1524
BstMWI GCNNNNNNNGC 2 cut(s) 80, 1439
BstNSI RCATGY 2 cut(s) 382, 1378
BstPAI GACNNNNGTC 1 cut(s) 1248
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 2 cut(s) 27, 1296
BstSLI GKGCMC 1 cut(s) 1743
BstV1I GCAGC 6 cut(s) 41, 484, 645, 1088, 1310, 1451
BstX2I RGATCY 2 cut(s) 367, 1085
BstYI RGATCY 2 cut(s) 367, 1085
BstZ17I GTATAC 2 cut(s) 1033, 1577
BstZI CGGCCG 1 cut(s) 467
Bsu15I ATCGAT 1 cut(s) 1607
BsuI GTATCC 1 cut(s) 1310
BsuRI GGCC 3 cut(s) 469, 738, 815
BsuTUI ATCGAT 1 cut(s) 1607
BtsCI GGATG 4 cut(s) 295, 479, 645, 1169
BtsIMutI CAGTG 6 cut(s) 97, 213, 540, 1495, 1743, 1792
Cac8I GCNNGC 1 cut(s) 1023
CciI TCATGA 1 cut(s) 450
Cfr10I RCCGGY 1 cut(s) 1050
Cfr13I GGNCC 1 cut(s) 633
ClaI ATCGAT 1 cut(s) 1607
CseI GACGC 2 cut(s) 724, 894
Csp6I GTAC 5 cut(s) 221, 402, 787, 1039, 1819
CspAI ACCGGT 1 cut(s) 1050
CviQI GTAC 5 cut(s) 221, 402, 787, 1039, 1819
DdeI CTNAG 4 cut(s) 84, 1008, 1077, 1735
DpnI GATC 6 cut(s) 5, 162, 278, 369, 1015, 1087
DpnII GATC 6 cut(s) 3, 160, 276, 367, 1013, 1085
EaeI YGGCCR 2 cut(s) 467, 813
EagI CGGCCG 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 1790
EclXI CGGCCG 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 1835
Eco24I GRGCYC 1 cut(s) 1792
Eco31I GGTCTC 1 cut(s) 1059
Eco32I GATATC 1 cut(s) 1192
Eco47I GGWCC 1 cut(s) 633
Eco52I CGGCCG 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 1790
Eco57I CTGAAG 2 cut(s) 166, 337
EcoICRI GAGCTC 1 cut(s) 1790
EcoO109I RGGNCCY 1 cut(s) 633
EcoRI GAATTC 2 cut(s) 475, 966
EcoRV GATATC 1 cut(s) 1192
EcoT14I CCWWGG 1 cut(s) 1835
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 1792
ErhI CCWWGG 1 cut(s) 1835
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FaqI GGGAC 1 cut(s) 1817
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 3 cut(s) 16, 1032, 1576
Fnu4HI GCNGC 7 cut(s) 30, 118, 498, 659, 1102, 1299, 1440
FokI GGATG 4 cut(s) 302, 466, 632, 1176
FriOI GRGCYC 1 cut(s) 1792
Fsp4HI GCNGC 7 cut(s) 30, 118, 498, 659, 1102, 1299, 1440
FspBI CTAG 8 cut(s) 50, 342, 1127, 1214, 1257, 1302, 1449, 1590
GluI GCNGC 7 cut(s) 30, 118, 498, 659, 1102, 1299, 1440
HaeIII GGCC 3 cut(s) 469, 738, 815
HapII CCGG 4 cut(s) 470, 877, 1051, 1328
HgaI GACGC 2 cut(s) 724, 894
Hin1I GRCGYC 2 cut(s) 716, 886
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 3 cut(s) 36, 150, 572
HpaI GTTAAC 1 cut(s) 538
HpaII CCGG 4 cut(s) 470, 877, 1051, 1328
HphI GGTGA 2 cut(s) 170, 188
Hpy166II GTNNAC 8 cut(s) 17, 223, 524, 538, 628, 1033, 1577, 1819
Hpy188I TCNGA 6 cut(s) 149, 281, 396, 562, 1243, 1388
Hpy188III TCNNGA 6 cut(s) 451, 805, 877, 1058, 1214, 1328
Hpy8I GTNNAC 8 cut(s) 17, 223, 524, 538, 628, 1033, 1577, 1819
Hpy99I CGWCG 1 cut(s) 1529
HpyAV CCTTC 5 cut(s) 117, 836, 1076, 1476, 1487
HpyCH4III ACNGT 5 cut(s) 101, 217, 432, 1598, 1796
HpyCH4IV ACGT 1 cut(s) 1815
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 1439
HpyF3I CTNAG 4 cut(s) 84, 1008, 1077, 1735
HpySE526I ACGT 1 cut(s) 1815
Hsp92I GRCGYC 2 cut(s) 716, 886
Kpn2I TCCGGA 2 cut(s) 876, 1327
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 538
Kzo9I GATC 6 cut(s) 3, 160, 276, 367, 1013, 1085
LguI GCTCTTC 1 cut(s) 322
LmnI GCTCC 7 cut(s) 505, 586, 879, 879, 1330, 1690, 1787
Lsp1109I GCAGC 6 cut(s) 41, 484, 645, 1088, 1310, 1451
LweI GCATC 9 cut(s) 280, 484, 516, 566, 1165, 1507, 1542, 1642, 1702
MaeI CTAG 8 cut(s) 50, 342, 1127, 1214, 1257, 1302, 1449, 1590
MaeII ACGT 1 cut(s) 1815
MaeIII GTNAC 6 cut(s) 137, 176, 426, 761, 1166, 1592
MalI GATC 6 cut(s) 5, 162, 278, 369, 1015, 1087
MbiI CCGCTC 1 cut(s) 882
MboI GATC 6 cut(s) 3, 160, 276, 367, 1013, 1085
MboII GAAGA 7 cut(s) 309, 758, 975, 1186, 1202, 1526, 1561
MfeI CAATTG 2 cut(s) 405, 957
MflI RGATCY 2 cut(s) 367, 1085
MhlI GDGCHC 3 cut(s) 1027, 1743, 1792
MlsI TGGCCA 1 cut(s) 815
MluNI TGGCCA 1 cut(s) 815
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 172
Mox20I TGGCCA 1 cut(s) 815
Mph1103I ATGCAT 1 cut(s) 559
MroI TCCGGA 2 cut(s) 876, 1327
MscI TGGCCA 1 cut(s) 815
MseI TTAA 9 cut(s) 537, 551, 825, 900, 1097, 1286, 1541, 1827, 1845
MslI CAYNNNNRTG 4 cut(s) 169, 978, 1570, 1736
Msp20I TGGCCA 1 cut(s) 815
MspCI CTTAAG 1 cut(s) 1096
MspI CCGG 4 cut(s) 470, 877, 1051, 1328
MspR9I CCNGG 1 cut(s) 471
MunI CAATTG 2 cut(s) 405, 957
Mva1269I GAATGC 2 cut(s) 229, 1435
MwoI GCNNNNNNNGC 2 cut(s) 80, 1439
NciI CCSGG 1 cut(s) 471
NdeII GATC 6 cut(s) 3, 160, 276, 367, 1013, 1085
NlaIV GGNNCC 3 cut(s) 369, 1087, 1309
NmuCI GTSAC 4 cut(s) 176, 761, 1166, 1592
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 2 cut(s) 382, 1378
OliI CACNNNNGTG 1 cut(s) 169
PagI TCATGA 1 cut(s) 450
PciI ACATGT 1 cut(s) 1374
PciSI GCTCTTC 1 cut(s) 322
PctI GAATGC 2 cut(s) 229, 1435
PfeI GAWTC 2 cut(s) 36, 572
PinAI ACCGGT 1 cut(s) 1050
PkrI GCNGC 7 cut(s) 31, 119, 499, 660, 1103, 1300, 1441
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 633
PscI ACATGT 1 cut(s) 1374
PshAI GACNNNNGTC 1 cut(s) 1248
PsiI TTATAA 2 cut(s) 264, 941
Psp124BI GAGCTC 1 cut(s) 1792
Psp5II RGGWCCY 1 cut(s) 633
PspN4I GGNNCC 3 cut(s) 369, 1087, 1309
PspPI GGNCC 1 cut(s) 633
PspPPI RGGWCCY 1 cut(s) 633
PsrI GAACNNNNNNTAC 2 cut(s) 620, 652
PstI CTGCAG 2 cut(s) 31, 1300
PsuI RGATCY 2 cut(s) 367, 1085
RsaI GTAC 5 cut(s) 222, 403, 788, 1040, 1820
RsaNI GTAC 5 cut(s) 221, 402, 787, 1039, 1819
RseI CAYNNNNRTG 4 cut(s) 169, 978, 1570, 1736
SacI GAGCTC 1 cut(s) 1792
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 9 cut(s) 537, 551, 825, 900, 1097, 1286, 1541, 1827, 1845
SatI GCNGC 7 cut(s) 30, 118, 498, 659, 1102, 1299, 1440
Sau3AI GATC 6 cut(s) 3, 160, 276, 367, 1013, 1085
Sau96I GGNCC 1 cut(s) 633
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 3 cut(s) 1027, 1743, 1792
SfaNI GCATC 9 cut(s) 280, 484, 516, 566, 1165, 1507, 1542, 1642, 1702
SfcI CTRYAG 2 cut(s) 27, 1296
SinI GGWCC 1 cut(s) 633
SmiMI CAYNNNNRTG 4 cut(s) 169, 978, 1570, 1736
SmlI CTYRAG 1 cut(s) 1096
SmoI CTYRAG 1 cut(s) 1096
SsiI CCGC 3 cut(s) 117, 174, 882
SspI AATATT 1 cut(s) 1348
SspMI CTAG 8 cut(s) 50, 342, 1127, 1214, 1257, 1302, 1449, 1590
SstI GAGCTC 1 cut(s) 1792
StyD4I CCNGG 1 cut(s) 469
StyI CCWWGG 1 cut(s) 1835
TaaI ACNGT 5 cut(s) 101, 217, 432, 1598, 1796
TaiI ACGT 1 cut(s) 1818
TaqI TCGA 1 cut(s) 1607
TaqII GACCGA 2 cut(s) 1238, 1538
TatI WGTACW 2 cut(s) 220, 1038
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 2 cut(s) 36, 572
Tru1I TTAA 9 cut(s) 537, 551, 825, 900, 1097, 1286, 1541, 1827, 1845
Tru9I TTAA 9 cut(s) 537, 551, 825, 900, 1097, 1286, 1541, 1827, 1845
TscAI CASTG 6 cut(s) 104, 220, 547, 1495, 1743, 1799
TseFI GTSAC 4 cut(s) 176, 761, 1166, 1592
TseI GCWGC 6 cut(s) 29, 497, 658, 1101, 1298, 1439
Tsp45I GTSAC 4 cut(s) 176, 761, 1166, 1592
TspGWI ACGGA 2 cut(s) 360, 599
TspRI CASTG 6 cut(s) 104, 220, 547, 1495, 1743, 1799
Vha464I CTTAAG 1 cut(s) 1096
VpaK11BI GGWCC 1 cut(s) 633
XapI RAATTY 6 cut(s) 461, 475, 966, 1119, 1222, 1455
XbaI TCTAGA 1 cut(s) 1213
XceI RCATGY 2 cut(s) 382, 1378
XmiI GTMKAC 3 cut(s) 16, 1032, 1576
XspI CTAG 8 cut(s) 50, 342, 1127, 1214, 1257, 1302, 1449, 1590
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.