Rw7G006460

Wall-associated receptor kinase C-terminal

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
5523400 .. 5527158
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006460.1

Sequence Viewer

Length: 1890 bp
ATGTCATCTGCTCGTTTGTACCTCCTTGCAGCTCTTCTCTCACTCTTGTTATTCAACTTTCATGGAAGCAAAGCCCACTTTGTACCCTCAACAAATTGCCCCATATACAATTGCGGTAATGGCCCTGATTTTCACTACCCTTTTTGGAAAATTGAAGACTCCACCGCCAATCAATATTGTGGTTACCCTGGTTTTGGTCTCAATTGCTCAGAGTCCGGAGAGCCAATACTCAGTCTCCCAAATAATGACTCCTACCATGTGAAAGACATAAACTTTATTGATTCCACCATCACCCTTGTTGACATCGACGTCTTCGATCAACAATGCCCTAGGGCAAGACACAGTATTAGTGTAGGCACGCTCCCATTGGATTACTCCCCATTGGATGTGAACCTGAGCTTCTACTTTAACTGCACTTCCTCTCCTGATCCTGTTGTGCCTCCCATAATCTGCTTGGGAATATGGGGAACCAAAATGTCTTATGTTTTCACGGAGGGAGAGCAATCAGATGGGTTTGAATGGTCTGAAAGTTGTGAGGAGAATGTGGTGGTGACTGTGATGAAGAGTAAGGAGCTTTATATTGATAAGTTGATTGGTGCTTTTGGAGGACTTATGAACCAGGGGTTTGTGCTTAACTGGACCACGGCGAAGGAGTGCGCTTCGTGTGAGAGTGGTGGTGGTTTGTGTGGGTACAACCGCACTAAAGCTGATGAGTTTCTCTGCTTCTGCAAATATAGTGATGGCCTATGCGAGAAGAAAGGCACTAGGTTCAACTGGAGATTGAAGGTTGTCATAGGCGTAGTTGCTACTATTGCAGGACCTGGTATCTTAGTGTTTGTTATTCTCTTCCGTGGGATTTCACTGATTAGGGAAAATGACAATGAAGATGCCGAGGCCTTGACTCAGAACATTGGACCTCTAGCAGTAAAAAGATACAAATTTTCGGATGTAACGAAAATGACCAACTCATTTAAAGATAAAATAGGTCAAGGCGGTTATGGTGACGTGTACGAAGGTAAGCTATTGAATGGTTGTCGTGTGGCTGTGAAGGTTCTGAAAGCATCCAAAGGGAATGGAGAGGTCTTTGTTAATGAGGTTGCAAGCATTAGTAGAACTTCCCATGTTAATATTGTTACTCTTTTGGGATATTGCTTTGAAGGTAAGAAAAAAGCGCTCATATATGAGTTCATGCCCAATGGATCACTTGAGAAATTCATATATACAGACAGTAATCCTTTGAAAACTACTCCACACTTGGAATTGGAAAGACTCTTTCAAATTTCTATCGGGATAGCTCGAGGGCTGGAGTACTTGCACCGTGGGTGCAACACACGAATCCTGCACTTTGACATAAAACCACATAATATCCTTTTGGATGAAAACTTTTTCCCAAAGATTTCTGACTTTGGTCTTTCTAAACTTTGTACAAGGAAGGAGAGCATTATTTCAATGTTGGATGCTAGAGGGACAATAGGGTATATAGCTCCAGAAGTGTACTGCAGAAACTTTGGAAGAGTGTCTGCTAAGTCCGATGTCTATAGTTATGGAATGATGATTCTGGAGATGGTCGGAGGAAGAAAGAATGTTGAAGCTCTAGTAAGCCGCACCAGTGAAATTTATTTTCCAAATTGGGTTTATGAGCATCTTGAGCAGGGCAGCAATTTCGGGTTGCTCAATGCAGAGACCGAAGAGGAAAAGGAAATCGCGAGGAAGATGATCTTAGTGGGATTGTGGTGCATACAGACAAGGCCATCTGATAGGCCGTCCATGACTAAAGTGATTGAACTGTTGGAAGGAAGCATTGAAGCCTTGCAAATGCCACCAAAGCCAGTCCTATCTTCTCCTGTTAGATCACCACCAGAATCTTCCACCTTATCAACATTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

629

Amino Acids

69.99

Weight (kDa)

5.88

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 33 - 101 1.6e-16 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 157 - 244 1.4e-17 Wall-associated receptor kinase C-terminal
PK_Tyr_Ser-Thr PF07714 324 - 596 2e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 325 - 594 3.7e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66910 AT1G66910 AT1G66920 AT1G66920 AT1G66920 AT1G66930 AT1G66930 AT1G66930 AT1G67000 AT1G70250 AT4G18250 AT5G38240 AT5G38240 AT5G38240 AT5G38250 AT5G38260 AT5G38280 AT5G38280
fragaria_vesca FvH4_1g03330 FvH4_4g26890 FvH4_4g26891 FvH4_4g26892 FvH4_4g26892 FvH4_4g26892 FvH4_4g26893 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26950 FvH4_4g26961 FvH4_4g26961 FvH4_4g34450 FvH4_4g34450 FvH4_4g34450 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g22251 FvH4_6g01490 FvH4_6g01490 FvH4_6g01490 FvH4_6g01502 FvH4_6g23830 FvH4_6g28430 FvH4_6g28450 FvH4_6g47250 FvH4_6g52670 FvH4_7g04150 FvH4_7g04150 FvH4_7g04160 FvH4_7g04170 FvH4_7g05990 FvH4_7g06001 FvH4_7g06010 FvH4_7g06010 FvH4_7g06060 FvH4_7g20630 FvH4_7g20630
malus_domestica MD01G1059700.v1.1 MD02G1233600.v1.1 MD02G1234400.v1.1 MD02G1234900.v1.1 MD02G1235600.v1.1 MD02G1245700.v1.1 MD02G1245800.v1.1 MD02G1246200.v1.1 MD02G1246300.v1.1 MD02G1246700.v1.1 MD02G1246800.v1.1 MD02G1247100.v1.1 MD02G1247300.v1.1 MD02G1247400.v1.1 MD02G1249300.v1.1 MD02G1249500.v1.1 MD02G1249700.v1.1 MD02G1250000.v1.1 MD02G1250200.v1.1 MD02G1250800.v1.1 MD02G1251800.v1.1 MD02G1252600.v1.1 MD02G1253600.v1.1 MD02G1273500.v1.1 MD02G1274000.v1.1 MD02G1274500.v1.1 MD04G1233100.v1.1 MD06G1136000.v1.1 MD06G1136200.v1.1 MD06G1136300.v1.1 MD06G1218300.v1.1 MD06G1218500.v1.1 MD06G1218600.v1.1 MD06G1219100.v1.1 MD07G1070000.v1.1 MD07G1070400.v1.1 MD07G1070700.v1.1 MD07G1071000.v1.1 MD07G1071100.v1.1 MD07G1137900.v1.1 MD07G1138000.v1.1 MD09G1255100.v1.1 MD12G1250700.v1.1 MD12G1251100.v1.1 MD12G1251500.v1.1 MD13G1036700.v1.1 MD13G1037900.v1.1 MD13G1038000.v1.1 MD16G1037900.v1.1 MD16G1038000.v1.1 MD16G1038600.v1.1 MD16G1038700.v1.1 MD16G1039200.v1.1 MD16G1039300.v1.1 MD16G1039500.v1.1
prunus_persica Prupe.1G315000_v2.0.a1 Prupe.1G315000_v2.0.a1 Prupe.1G315100_v2.0.a1 Prupe.1G315300_v2.0.a1 Prupe.1G315400_v2.0.a1 Prupe.1G496900_v2.0.a1 Prupe.2G033400_v2.0.a1 Prupe.2G047500_v2.0.a1 Prupe.2G048700_v2.0.a1 Prupe.2G067100_v2.0.a1 Prupe.2G087100_v2.0.a1 Prupe.2G087500_v2.0.a1 Prupe.2G087800_v2.0.a1 Prupe.2G088100_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088800_v2.0.a1 Prupe.2G092500_v2.0.a1 Prupe.2G092800_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093100_v2.0.a1 Prupe.2G093200_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093400_v2.0.a1 Prupe.2G093500_v2.0.a1 Prupe.2G093600_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G103300_v2.0.a1 Prupe.2G103900_v2.0.a1 Prupe.2G312200_v2.0.a1 Prupe.3G145200_v2.0.a1 Prupe.3G145600_v2.0.a1 Prupe.3G145700_v2.0.a1 Prupe.3G145800_v2.0.a1 Prupe.3G145900_v2.0.a1 Prupe.3G146000_v2.0.a1 Prupe.3G146100_v2.0.a1 Prupe.3G146200_v2.0.a1 Prupe.3G146600_v2.0.a1 Prupe.5G223800_v2.0.a1 Prupe.6G137800_v2.0.a1 Prupe.6G138000_v2.0.a1 Prupe.6G141600_v2.0.a1 Prupe.6G141900_v2.0.a1 Prupe.6G142000_v2.0.a1 Prupe.6G142100_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G352800_v2.0.a1 Prupe.6G352800_v2.0.a1
pyrus_communis pycom01g08840 pycom01g08860 pycom01g08920 pycom01g08960 pycom01g08990 pycom01g09000 pycom02g20230 pycom02g21120 pycom02g21140 pycom02g21350 pycom02g21360 pycom02g21400 pycom02g21510 pycom02g23440 pycom02g23450 pycom02g23480 pycom02g23490 pycom04g20650 pycom04g20690 pycom04g20710 pycom04g20730 pycom06g12760 pycom06g19500 pycom06g19510 pycom06g19530 pycom06g19540 pycom06g19570 pycom12g23070 pycom12g23080 pycom12g23100 pycom13g03140 pycom13g03250 pycom13g03290 pycom13g03300 pycom14g19010 pycom16g03300 pycom16g03320 pycom16g03370 pycom16g03380 pycom16g03400 pycom17g24970 pycom17g25020 pycom17g25150 pycom17g25180 pycom17g25240 pycom17g25250
rosa_chinensis RchiOBHm_Chr1g0325081 RchiOBHm_Chr1g0325091 RchiOBHm_Chr1g0325111 RchiOBHm_Chr1g0325131 RchiOBHm_Chr1g0328221 RchiOBHm_Chr1g0328241 RchiOBHm_Chr1g0328281 RchiOBHm_Chr1g0328331 RchiOBHm_Chr1g0328371 RchiOBHm_Chr1g0328401 RchiOBHm_Chr1g0328481 RchiOBHm_Chr1g0328501 RchiOBHm_Chr1g0328591 RchiOBHm_Chr1g0328601 RchiOBHm_Chr1g0328751 RchiOBHm_Chr1g0329621 RchiOBHm_Chr1g0329631 RchiOBHm_Chr1g0333261 RchiOBHm_Chr1g0333291 RchiOBHm_Chr1g0333331 RchiOBHm_Chr1g0333351 RchiOBHm_Chr1g0333441 RchiOBHm_Chr1g0333481 RchiOBHm_Chr1g0333571 RchiOBHm_Chr1g0333611 RchiOBHm_Chr1g0334191 RchiOBHm_Chr1g0334281 RchiOBHm_Chr1g0334791 RchiOBHm_Chr1g0334801 RchiOBHm_Chr1g0334831 RchiOBHm_Chr1g0334841 RchiOBHm_Chr1g0384001 RchiOBHm_Chr2g0138701 RchiOBHm_Chr2g0166291 RchiOBHm_Chr2g0166311 RchiOBHm_Chr2g0166321 RchiOBHm_Chr3g0449131 RchiOBHm_Chr3g0449161 RchiOBHm_Chr3g0449331 RchiOBHm_Chr3g0449361 RchiOBHm_Chr3g0449381 RchiOBHm_Chr3g0482511 RchiOBHm_Chr3g0482521 RchiOBHm_Chr3g0482701 RchiOBHm_Chr4g0405811 RchiOBHm_Chr4g0434521 RchiOBHm_Chr4g0434661 RchiOBHm_Chr4g0434681 RchiOBHm_Chr4g0434701 RchiOBHm_Chr4g0434711 RchiOBHm_Chr5g0047441 RchiOBHm_Chr5g0047581 RchiOBHm_Chr5g0047621 RchiOBHm_Chr5g0047671 RchiOBHm_Chr5g0047761 RchiOBHm_Chr5g0047851 RchiOBHm_Chr5g0047981 RchiOBHm_Chr5g0048071 RchiOBHm_Chr5g0059221 RchiOBHm_Chr5g0059231 RchiOBHm_Chr5g0078441 RchiOBHm_Chr6g0264171 RchiOBHm_Chr6g0264401 RchiOBHm_Chr6g0264411 RchiOBHm_Chr6g0273031 RchiOBHm_Chr6g0283331 RchiOBHm_Chr7g0185621 RchiOBHm_Chr7g0185831 RchiOBHm_Chr7g0185841 RchiOBHm_Chr7g0185851 RchiOBHm_Chr7g0185861 RchiOBHm_Chr7g0185871 RchiOBHm_Chr7g0185881 RchiOBHm_Chr7g0185901 RchiOBHm_Chr7g0185911 RchiOBHm_Chr7g0185931 RchiOBHm_Chr7g0185951 RchiOBHm_Chr7g0185991 RchiOBHm_Chr7g0186011 RchiOBHm_Chr7g0201241 RchiOBHm_Chr7g0209921
rosa_laevigata RLG00000004874 RLG00000004876 RLG00000004878 RLG00000004879 RLG00000004880 RLG00000004881 RLG00000006656 RLG00000006657 RLG00000006659 RLG00000006666 RLG00000008822 RLG00000008823 RLG00000014282 RLG00000019268 RLG00000020174 RLG00000021604 RLG00000021605 RLG00000021606 RLG00000023348 RLG00000024362 RLG00000025836 RLG00000025838 RLG00000025848 RLG00000025849 RLG00000025850 RLG00000029421 RLG00000029464 RLG00000029467 RLG00000029469 RLG00000029470 RLG00000029471 RLG00000029547 RLG00000029552 RLG00000029603 RLG00000029604 RLG00000029612 RLG00000029613 RLG00000029617 RLG00000029920 RLG00000029923 RLG00000029924 RLG00000029927 RLG00000029930 RLG00000029933 RLG00000029941 RLG00000030158 RLG00000030159 RLG00000034494 RLG00000035280 RLG00000035281
rosa_multiflora Rmu_co8033562.1_g000001 Rmu_co8168632.1_g000001 Rmu_co8248815.1_g000001 Rmu_co8346553.1_g000001 Rmu_co8352941.1_g000001 Rmu_co8372625.1_g000001 Rmu_co8486819.1_g000001 Rmu_sc0000148.1_g000013 Rmu_sc0000148.1_g000033 Rmu_sc0000148.1_g000045 Rmu_sc0000148.1_g000075 Rmu_sc0000194.1_g000011 Rmu_sc0000194.1_g000015 Rmu_sc0000194.1_g000018 Rmu_sc0000215.1_g000021 Rmu_sc0000494.1_g000001 Rmu_sc0000494.1_g000016 Rmu_sc0000574.1_g000038 Rmu_sc0000574.1_g000040 Rmu_sc0000580.1_g000027 Rmu_sc0000580.1_g000029 Rmu_sc0000725.1_g000001 Rmu_sc0000725.1_g000002 Rmu_sc0000725.1_g000005 Rmu_sc0000725.1_g000019 Rmu_sc0000895.1_g000001 Rmu_sc0000982.1_g000004 Rmu_sc0000982.1_g000034 Rmu_sc0000982.1_g000035 Rmu_sc0000982.1_g000087 Rmu_sc0000982.1_g000107 Rmu_sc0001009.1_g000033 Rmu_sc0001009.1_g000036 Rmu_sc0001129.1_g000001 Rmu_sc0001200.1_g000018 Rmu_sc0001234.1_g000006 Rmu_sc0001349.1_g000008 Rmu_sc0001563.1_g000027 Rmu_sc0001563.1_g000028 Rmu_sc0001563.1_g000038 Rmu_sc0001563.1_g000046 Rmu_sc0001654.1_g000006 Rmu_sc0001654.1_g000007 Rmu_sc0001829.1_g000005 Rmu_sc0002107.1_g000004 Rmu_sc0002107.1_g000007 Rmu_sc0002107.1_g000008 Rmu_sc0002548.1_g000036 Rmu_sc0002955.1_g000013 Rmu_sc0002955.1_g000029 Rmu_sc0002965.1_g000002 Rmu_sc0002965.1_g000003 Rmu_sc0002965.1_g000017 Rmu_sc0002965.1_g000027 Rmu_sc0002965.1_g000028 Rmu_sc0002969.1_g000010 Rmu_sc0002983.1_g000033 Rmu_sc0003166.1_g000001 Rmu_sc0003441.1_g000001 Rmu_sc0003441.1_g000010 Rmu_sc0003441.1_g000011 Rmu_sc0003776.1_g000034 Rmu_sc0003776.1_g000035 Rmu_sc0004178.1_g000005 Rmu_sc0004241.1_g000010 Rmu_sc0004356.1_g000003 Rmu_sc0004470.1_g000014 Rmu_sc0004470.1_g000018 Rmu_sc0004538.1_g000009 Rmu_sc0004646.1_g000041 Rmu_sc0004736.1_g000001 Rmu_sc0004736.1_g000016 Rmu_sc0004736.1_g000020 Rmu_sc0004753.1_g000001 Rmu_sc0004753.1_g000012 Rmu_sc0004805.1_g000025 Rmu_sc0004874.1_g000010 Rmu_sc0005613.1_g000002 Rmu_sc0005665.1_g000006 Rmu_sc0005665.1_g000022 Rmu_sc0005665.1_g000024 Rmu_sc0005665.1_g000030 Rmu_sc0005665.1_g000032 Rmu_sc0005665.1_g000034 Rmu_sc0005665.1_g000036 Rmu_sc0005665.1_g000037 Rmu_sc0005665.1_g000039 Rmu_sc0005783.1_g000007 Rmu_sc0005899.1_g000014 Rmu_sc0006031.1_g000005 Rmu_sc0006031.1_g000008 Rmu_sc0006661.1_g000006 Rmu_sc0006959.1_g000006 Rmu_sc0006959.1_g000008 Rmu_sc0006959.1_g000013 Rmu_sc0007214.1_g000004 Rmu_sc0007477.1_g000006 Rmu_sc0007681.1_g000001 Rmu_sc0007681.1_g000005 Rmu_sc0008439.1_g000002 Rmu_sc0008439.1_g000006 Rmu_sc0009205.1_g000009 Rmu_sc0009205.1_g000024 Rmu_sc0009869.1_g000001 Rmu_sc0009881.1_g000003 Rmu_sc0013038.1_g000007 Rmu_sc0013038.1_g000010 Rmu_sc0016170.1_g000010 Rmu_sc0016170.1_g000016 Rmu_sc0016751.1_g000005 Rmu_sc0017361.1_g000001 Rmu_sc0021068.1_g000001 Rmu_sc0021282.1_g000001 Rmu_sc0024214.1_g000002 Rmu_sc0025695.1_g000001 Rmu_sc0028145.1_g000002 Rmu_sc0036877.1_g000001 Rmu_sc0038968.1_g000001 Rmu_ssc0000047.1_g000006 Rmu_ssc0000047.1_g000007 Rmu_ssc0000388.1_g000041
rosa_roxburghii Rroxscaffold_176G00431510 Rroxscaffold_176G00431520 Rroxscaffold_1G00021210 Rroxscaffold_1G00033850 Rroxscaffold_1G00033940 Rroxscaffold_2G00085010 Rroxscaffold_3G00227760 Rroxscaffold_3G00248800 Rroxscaffold_3G00268520 Rroxscaffold_3G00268550 Rroxscaffold_3G00268590 Rroxscaffold_3G00268600 Rroxscaffold_4G00316560 Rroxscaffold_4G00316920 Rroxscaffold_4G00316930 Rroxscaffold_4G00317380 Rroxscaffold_4G00317420 Rroxscaffold_4G00317550 Rroxscaffold_4G00317560 Rroxscaffold_4G00317640 Rroxscaffold_4G00317660 Rroxscaffold_4G00320870 Rroxscaffold_4G00320880 Rroxscaffold_4G00321480 Rroxscaffold_4G00321690 Rroxscaffold_4G00321890 Rroxscaffold_5G00350290 Rroxscaffold_5G00375840 Rroxscaffold_5G00375890 Rroxscaffold_5G00375910 Rroxscaffold_5G00375920 Rroxscaffold_6G00398920 Rroxscaffold_6G00399010 Rroxscaffold_6G00399320 Rroxscaffold_6G00415790 Rroxscaffold_6G00427220 Rroxscaffold_6G00427340 Rroxscaffold_7G00203530
rosa_rugosa Rorug01G0049600 Rorug01G0073600.1 Rorug01G0074600 Rorug01G0074900 Rorug01G0075000 Rorug01G0075100 Rorug01G0075400 Rorug01G0081300 Rorug01G0081400 Rorug01G0103400 Rorug01G0103500 Rorug01G0108300 Rorug01G0108400 Rorug01G0108600 Rorug01G0108700 Rorug01G0109300 Rorug01G0110000 Rorug01G0110600 Rorug01G0111900 Rorug01G0116400 Rorug01G0116500 Rorug01G0116900 Rorug01G0117000 Rorug02G0305700 Rorug02G0305900 Rorug02G0521800 Rorug02G0521900 Rorug02G0522000 Rorug02G0522000 Rorug02G0522100 Rorug02G0618100 Rorug02G0618200 Rorug02G0618500 Rorug02G0619900 Rorug02G0620000 Rorug02G0620100 Rorug02G0620200 Rorug03G0100200 Rorug03G0197900 Rorug04G0062400 Rorug04G0277100 Rorug04G0277500 Rorug04G0277500 Rorug04G0277600 Rorug04G0277600 Rorug04G0277700 Rorug05G0156000.1 Rorug05G0236300 Rorug05G0236300 Rorug05G0236300 Rorug05G0236500 Rorug05G0236600 Rorug06G0008000 Rorug06G0008100 Rorug06G0008400 Rorug06G0008500 Rorug06G0008600 Rorug06G0008700 Rorug06G0009400 Rorug06G0009500 Rorug06G0009600 Rorug06G0030300 Rorug06G0087000 Rorug06G0099800 Rorug06G0471600 Rorug06G0471600 Rorug06G0471700 Rorug07G0117400
rosa_samantha Rh1AG090600 Rh1AG092700 Rh1AG093100 Rh1AG093800 Rh1AG131300 Rh1AG131600 Rh1AG132000 Rh1AG133000 Rh1AG140900 Rh1AG165100 Rh1BG072500 Rh1BG074100 Rh1BG074300 Rh1BG074800 Rh1BG074900 Rh1BG100800 Rh1BG101000 Rh1BG101400 Rh1BG108200 Rh1CG095600 Rh1CG125200 Rh1CG125500 Rh1CG125800 Rh1CG132800 Rh1DG095200 Rh1DG095600 Rh1DG095700 Rh1DG096400 Rh1DG096900 Rh1DG097000 Rh1DG136700 Rh1DG137000 Rh1DG137200 Rh1DG137900 Rh1DG138200 Rh1DG138400 Rh1DG138800 Rh1DG139200 Rh1DG142400 Rh1DG145000 Rh2AG588100 Rh2BG460400 Rh2BG600100 Rh2CG571000 Rh2DG469800 Rh2DG610300 Rh3AG016800 Rh3AG249300 Rh3BG016900 Rh3BG017900 Rh3BG018000 Rh3CG016000 Rh3CG016900 Rh3CG017100 Rh3CG282700 Rh3DG017200 Rh3DG018200 Rh3DG018600 Rh3DG276000 Rh3DG278500 Rh4AG133800 Rh4AG332900 Rh4AG333100 Rh4AG334100 Rh4BG340600 Rh4BG340900 Rh4BG341800 Rh4CG355800 Rh4DG335900 Rh5CG351100 Rh5CG351300 Rh5CG351400 Rh5CG351700 Rh5CG351900 Rh5CG352200 Rh5CG421500 Rh6AG131900 Rh6AG265700 Rh6BG129100 Rh6CG124600 Rh6CG127100 Rh6CG267800 Rh6DG111300 Rh6DG114600 Rh7AG070800 Rh7AG251300 Rh7CG077200 Rh7CG077300 Rh7CG077500 Rh7CG268100 Rh7DG076900 Rh7DG077200 Rh7DG077300 Rh7DG077700 Rh7DG257700
rosa_wichuraiana Rw0G013150 Rw0G018000 Rw0G019300 Rw0G022850 Rw1G007090 Rw1G007130 Rw1G007160 Rw1G007210 Rw1G007770 Rw1G007850 Rw1G010720 Rw1G010780 Rw1G010860 Rw1G010890 Rw1G010900 Rw1G010950 Rw1G010960 Rw1G011020 Rw1G011060 Rw1G011100 Rw1G011420 Rw2G029200 Rw2G049010 Rw3G001260 Rw3G001370 Rw3G001400 Rw3G001430 Rw3G022340 Rw3G022510 Rw4G010890 Rw4G028850 Rw4G028930 Rw4G028950 Rw4G028970 Rw4G029040 Rw4G029060 Rw4G029080 Rw4G029100 Rw4G029110 Rw4G029120 Rw5G029450 Rw5G029480 Rw5G029570 Rw5G036350 Rw6G011290 Rw6G011310 Rw6G011530 Rw7G006420 Rw7G006430 Rw7G006460 Rw7G021320

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AatII GACGTC 1 cut(s) 312
AccII CGCG 1 cut(s) 1706
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 5 cut(s) 114, 165, 697, 993, 1603
AclWI GGATC 2 cut(s) 422, 1207
AcsI RAATTY 4 cut(s) 938, 1211, 1278, 1614
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 7 cut(s) 20, 84, 692, 1010, 1310, 1426, 1496
AfeI AGCGCT 1 cut(s) 1173
AfiI CCNNNNNNNGG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 1005
AjiI CACGTC 1 cut(s) 1006
AjnI CCWGG 3 cut(s) 187, 618, 820
AluBI AGCT 8 cut(s) 32, 399, 574, 707, 1021, 1295, 1484, 1592
AluI AGCT 8 cut(s) 32, 399, 574, 707, 1021, 1295, 1484, 1592
Alw26I GTCTC 3 cut(s) 203, 239, 1676
AlwI GGATC 2 cut(s) 422, 1207
AlwNI CAGNNNCTG 1 cut(s) 821
Ama87I CYCGRG 1 cut(s) 1296
Aor13HI TCCGGA 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 1173
AoxI GGCC 5 cut(s) 121, 742, 894, 1748, 1760
ApeKI GCWGC 2 cut(s) 29, 1656
ApoI RAATTY 4 cut(s) 938, 1211, 1278, 1614
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 2 cut(s) 659, 1174
AspS9I GGNCC 4 cut(s) 122, 639, 818, 914
AsuHPI GGTGA 4 cut(s) 283, 562, 1013, 1845
AvaI CYCGRG 1 cut(s) 1296
AvaII GGWCC 3 cut(s) 639, 818, 914
AvrII CCTAGG 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 162, 304
BbvI GCAGC 2 cut(s) 41, 1668
BccI CCATC 5 cut(s) 296, 503, 734, 1558, 1759
BceAI ACGGC 2 cut(s) 660, 1747
BcgI CGANNNNNNTGC 2 cut(s) 1645, 1679
BciT130I CCWGG 3 cut(s) 189, 620, 822
BcoDI GTCTC 3 cut(s) 203, 239, 1676
BfaI CTAG 5 cut(s) 330, 765, 920, 1461, 1595
BfmI CTRYAG 2 cut(s) 1498, 1537
BfoI RGCGCY 1 cut(s) 1175
BisI GCNGC 3 cut(s) 30, 1603, 1657
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 3 cut(s) 31, 1604, 1658
BmcAI AGTACT 1 cut(s) 1310
Bme1390I CCNGG 3 cut(s) 189, 620, 822
Bme18I GGWCC 3 cut(s) 639, 818, 914
BmeT110I CYCGRG 1 cut(s) 1296
BmgBI CACGTC 1 cut(s) 1006
BmgT120I GGNCC 4 cut(s) 122, 639, 818, 914
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 3 cut(s) 189, 620, 822
BmsI GCATC 4 cut(s) 877, 1070, 1447, 1651
BoxI GACNNNNGTC 1 cut(s) 1407
BpiI GAAGAC 2 cut(s) 162, 304
BpmI CTGGAG 4 cut(s) 796, 1325, 1470, 1580
Bpu10I CCTNAGC 1 cut(s) 395
BpuEI CTTGAG 2 cut(s) 1226, 1667
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 203, 1676
BsaJI CCNNGG 7 cut(s) 187, 329, 619, 642, 850, 891, 1318
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 4 cut(s) 219, 249, 406, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 4 cut(s) 641, 779, 1608, 1829
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 3 cut(s) 189, 620, 822
BseDI CCNNGG 7 cut(s) 187, 329, 619, 642, 850, 891, 1318
BseGI GGATG 5 cut(s) 391, 952, 1061, 1381, 1462
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 4 cut(s) 222, 244, 386, 917
BseNI ACTGG 4 cut(s) 641, 779, 1608, 1829
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 2 cut(s) 41, 1668
BsgI GTGCAG 2 cut(s) 397, 1325
Bsh1236I CGCG 1 cut(s) 1706
BshFI GGCC 5 cut(s) 123, 744, 896, 1750, 1762
BsiHKCI CYCGRG 1 cut(s) 1296
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 1480
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 3 cut(s) 203, 239, 1676
BsmFI GGGAC 1 cut(s) 1480
BsnI GGCC 5 cut(s) 123, 744, 896, 1750, 1762
Bso31I GGTCTC 2 cut(s) 203, 1676
BsoBI CYCGRG 1 cut(s) 1296
Bsp13I TCCGGA 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 1424
Bsp143I GATC 5 cut(s) 316, 427, 1199, 1716, 1850
Bsp68I TCGCGA 1 cut(s) 1706
BspACI CCGC 5 cut(s) 114, 165, 697, 993, 1603
BspANI GGCC 5 cut(s) 123, 744, 896, 1750, 1762
BspCNI CTCAG 4 cut(s) 221, 243, 387, 916
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 1 cut(s) 1706
BspLI GGNNCC 1 cut(s) 469
BspMAI CTGCAG 1 cut(s) 1502
BspPI GGATC 2 cut(s) 422, 1207
BspQI GCTCTTC 1 cut(s) 39
BspTNI GGTCTC 2 cut(s) 203, 1676
BsrGI TGTACA 1 cut(s) 1424
BsrI ACTGG 4 cut(s) 641, 779, 1608, 1829
BssECI CCNNGG 7 cut(s) 187, 329, 619, 642, 850, 891, 1318
BssMI GATC 5 cut(s) 316, 427, 1199, 1716, 1850
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 3 cut(s) 189, 620, 822
Bst4CI ACNGT 5 cut(s) 344, 556, 1229, 1319, 1788
Bst6I CTCTTC 5 cut(s) 39, 557, 851, 1507, 1683
BstACI GRCGYC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 1424
BstC8I GCNNGC 2 cut(s) 359, 1102
BstDEI CTNAG 7 cut(s) 208, 230, 395, 829, 903, 1524, 1720
BstDSI CCRYGG 3 cut(s) 642, 850, 1318
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 5 cut(s) 391, 952, 1061, 1381, 1462
BstFNI CGCG 1 cut(s) 1706
BstH2I RGCGCY 1 cut(s) 1175
BstHHI GCGC 2 cut(s) 659, 1174
BstKTI GATC 5 cut(s) 319, 430, 1202, 1719, 1853
BstMAI GTCTC 3 cut(s) 203, 239, 1676
BstMBI GATC 5 cut(s) 316, 427, 1199, 1716, 1850
BstMWI GCNNNNNNNGC 4 cut(s) 120, 812, 1648, 1825
BstNI CCWGG 3 cut(s) 189, 620, 822
BstPAI GACNNNNGTC 1 cut(s) 1407
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 187, 618, 820
BstSFI CTRYAG 2 cut(s) 1498, 1537
BstUI CGCG 1 cut(s) 1706
BstV1I GCAGC 2 cut(s) 41, 1668
BstV2I GAAGAC 2 cut(s) 162, 304
BsuRI GGCC 5 cut(s) 123, 744, 896, 1750, 1762
BtgI CCRYGG 3 cut(s) 642, 850, 1318
BtrI CACGTC 1 cut(s) 1006
BtsCI GGATG 5 cut(s) 391, 952, 1061, 1381, 1462
BtsIMutI CAGTG 2 cut(s) 860, 1615
BtuMI TCGCGA 1 cut(s) 1706
Cac8I GCNNGC 2 cut(s) 359, 1102
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 2 cut(s) 659, 1174
Cfr13I GGNCC 4 cut(s) 122, 639, 818, 914
CsiI ACCWGGT 1 cut(s) 820
Csp6I GTAC 7 cut(s) 19, 83, 691, 1009, 1309, 1425, 1495
CviAII CATG 5 cut(s) 62, 257, 1121, 1189, 1768
CviQI GTAC 7 cut(s) 19, 83, 691, 1009, 1309, 1425, 1495
DdeI CTNAG 7 cut(s) 208, 230, 395, 829, 903, 1524, 1720
DpnI GATC 5 cut(s) 318, 429, 1201, 1718, 1852
DpnII GATC 5 cut(s) 316, 427, 1199, 1716, 1850
DraI TTTAAA 1 cut(s) 973
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 5 cut(s) 39, 557, 851, 1507, 1683
EarI CTCTTC 5 cut(s) 39, 557, 851, 1507, 1683
Eco130I CCWWGG 1 cut(s) 329
Eco147I AGGCCT 1 cut(s) 896
Eco31I GGTCTC 2 cut(s) 203, 1676
Eco47I GGWCC 3 cut(s) 639, 818, 914
Eco47III AGCGCT 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 1296
Eco91I GGTNACC 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 818
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 187, 618, 820
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 5 cut(s) 65, 260, 1124, 1192, 1771
FalI AAGNNNNNCTT 2 cut(s) 1703, 1735
FaqI GGGAC 1 cut(s) 1480
FatI CATG 5 cut(s) 61, 256, 1120, 1188, 1767
Fnu4HI GCNGC 3 cut(s) 30, 1603, 1657
FokI GGATG 5 cut(s) 398, 959, 1048, 1388, 1469
Fsp4HI GCNGC 3 cut(s) 30, 1603, 1657
FspBI CTAG 5 cut(s) 330, 765, 920, 1461, 1595
GlaI GCGC 2 cut(s) 658, 1173
GluI GCNGC 3 cut(s) 30, 1603, 1657
GsuI CTGGAG 4 cut(s) 796, 1325, 1470, 1580
HaeII RGCGCY 1 cut(s) 1175
HaeIII GGCC 5 cut(s) 123, 744, 896, 1750, 1762
HapII CCGG 1 cut(s) 216
HhaI GCGC 2 cut(s) 659, 1174
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 5 cut(s) 65, 260, 1124, 1192, 1771
Hin6I GCGC 2 cut(s) 657, 1172
HinP1I GCGC 2 cut(s) 657, 1172
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 9 cut(s) 158, 212, 248, 281, 901, 1269, 1335, 1555, 1862
HpaII CCGG 1 cut(s) 216
HphI GGTGA 4 cut(s) 283, 562, 1013, 1845
Hpy166II GTNNAC 4 cut(s) 301, 391, 1009, 1495
Hpy188III TCNNGA 7 cut(s) 216, 425, 1288, 1487, 1559, 1646, 1705
Hpy8I GTNNAC 4 cut(s) 301, 391, 1009, 1495
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 7 cut(s) 643, 778, 1007, 1042, 1151, 1426, 1787
HpyCH4III ACNGT 5 cut(s) 344, 556, 1229, 1319, 1788
HpyCH4IV ACGT 2 cut(s) 309, 1005
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 812, 1648, 1825
HpyF3I CTNAG 7 cut(s) 208, 230, 395, 829, 903, 1524, 1720
HpySE526I ACGT 2 cut(s) 309, 1005
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 5 cut(s) 65, 260, 1124, 1192, 1771
HspAI GCGC 2 cut(s) 657, 1172
Kpn2I TCCGGA 1 cut(s) 215
Kzo9I GATC 5 cut(s) 316, 427, 1199, 1716, 1850
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 3 cut(s) 366, 571, 1489
Lsp1109I GCAGC 2 cut(s) 41, 1668
LweI GCATC 4 cut(s) 877, 1070, 1447, 1651
MabI ACCWGGT 1 cut(s) 820
MaeI CTAG 5 cut(s) 330, 765, 920, 1461, 1595
MaeII ACGT 2 cut(s) 309, 1005
MaeIII GTNAC 5 cut(s) 182, 550, 949, 1001, 1132
MalI GATC 5 cut(s) 318, 429, 1201, 1718, 1852
MboI GATC 5 cut(s) 316, 427, 1199, 1716, 1850
MfeI CAATTG 2 cut(s) 109, 202
MlyI GAGTC 5 cut(s) 152, 221, 242, 895, 1263
MmeI TCCRAC 3 cut(s) 1434, 1549, 1770
MroI TCCGGA 1 cut(s) 215
MseI TTAA 6 cut(s) 408, 633, 972, 1089, 1125, 1883
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 189, 620, 822
MunI CAATTG 2 cut(s) 109, 202
MvaI CCWGG 3 cut(s) 189, 620, 822
MvnI CGCG 1 cut(s) 1706
MwoI GCNNNNNNNGC 4 cut(s) 120, 812, 1648, 1825
NdeII GATC 5 cut(s) 316, 427, 1199, 1716, 1850
NlaIII CATG 5 cut(s) 65, 260, 1124, 1192, 1771
NlaIV GGNNCC 1 cut(s) 469
NmeAIII GCCGAG 1 cut(s) 916
NmuCI GTSAC 2 cut(s) 550, 1001
NruI TCGCGA 1 cut(s) 1706
PaeR7I CTCGAG 1 cut(s) 1296
PceI AGGCCT 1 cut(s) 896
PciSI GCTCTTC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 2 cut(s) 312, 950
PfeI GAWTC 4 cut(s) 281, 1335, 1555, 1862
PkrI GCNGC 3 cut(s) 31, 1604, 1658
PleI GAGTC 5 cut(s) 152, 220, 242, 895, 1263
PpsI GAGTC 5 cut(s) 152, 220, 242, 895, 1263
PpuMI RGGWCCY 1 cut(s) 818
PshAI GACNNNNGTC 1 cut(s) 1407
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 3 cut(s) 187, 618, 820
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 3 cut(s) 187, 618, 820
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 4 cut(s) 122, 639, 818, 914
PspPPI RGGWCCY 1 cut(s) 818
PspXI VCTCGAGB 1 cut(s) 1296
PstI CTGCAG 1 cut(s) 1502
PstNI CAGNNNCTG 1 cut(s) 821
RruI TCGCGA 1 cut(s) 1706
RsaI GTAC 7 cut(s) 20, 84, 692, 1010, 1310, 1426, 1496
RsaNI GTAC 7 cut(s) 19, 83, 691, 1009, 1309, 1425, 1495
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 6 cut(s) 408, 633, 972, 1089, 1125, 1883
SatI GCNGC 3 cut(s) 30, 1603, 1657
Sau3AI GATC 5 cut(s) 316, 427, 1199, 1716, 1850
Sau96I GGNCC 4 cut(s) 122, 639, 818, 914
ScaI AGTACT 1 cut(s) 1310
SchI GAGTC 5 cut(s) 152, 221, 242, 895, 1263
ScrFI CCNGG 3 cut(s) 189, 620, 822
SexAI ACCWGGT 1 cut(s) 820
SfaNI GCATC 4 cut(s) 877, 1070, 1447, 1651
SfcI CTRYAG 2 cut(s) 1498, 1537
Sfr274I CTCGAG 1 cut(s) 1296
SinI GGWCC 3 cut(s) 639, 818, 914
SlaI CTCGAG 1 cut(s) 1296
SmlI CTYRAG 3 cut(s) 1205, 1296, 1646
SmoI CTYRAG 3 cut(s) 1205, 1296, 1646
SseBI AGGCCT 1 cut(s) 896
SsiI CCGC 5 cut(s) 114, 165, 697, 993, 1603
SspI AATATT 2 cut(s) 176, 1129
SspMI CTAG 5 cut(s) 330, 765, 920, 1461, 1595
StuI AGGCCT 1 cut(s) 896
StyD4I CCNGG 3 cut(s) 187, 618, 820
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 5 cut(s) 344, 556, 1229, 1319, 1788
TaiI ACGT 2 cut(s) 312, 1008
TaqI TCGA 3 cut(s) 306, 315, 1297
TaqII GACCGA 1 cut(s) 1700
TatI WGTACW 3 cut(s) 1308, 1424, 1494
TauI GCSGC 1 cut(s) 1605
TfiI GAWTC 4 cut(s) 281, 1335, 1555, 1862
Tru1I TTAA 6 cut(s) 408, 633, 972, 1089, 1125, 1883
Tru9I TTAA 6 cut(s) 408, 633, 972, 1089, 1125, 1883
TscAI CASTG 2 cut(s) 867, 1615
TseFI GTSAC 2 cut(s) 550, 1001
TseI GCWGC 2 cut(s) 29, 1656
Tsp45I GTSAC 2 cut(s) 550, 1001
TspDTI ATGAA 7 cut(s) 50, 575, 629, 897, 1177, 1204, 1392
TspGWI ACGGA 2 cut(s) 506, 839
TspRI CASTG 2 cut(s) 867, 1615
VpaK11BI GGWCC 3 cut(s) 639, 818, 914
XapI RAATTY 4 cut(s) 938, 1211, 1278, 1614
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XhoI CTCGAG 1 cut(s) 1296
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 5 cut(s) 330, 765, 920, 1461, 1595
ZraI GACGTC 1 cut(s) 310
ZrmI AGTACT 1 cut(s) 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.