Cyclic nucleotide-gated ion channel 1-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 132 - 178 | 8.3e-06 | PPR repeat family |
| PPR_2 | PF13041 | 348 - 394 | 2.7e-06 | PPR repeat family |
| PPR_2 | PF13041 | 447 - 492 | 1.6e-08 | PPR repeat family |
| E_motif | PF20431 | 562 - 624 | 8.4e-15 | E motif |
| DYW_deaminase | PF14432 | 660 - 756 | 4.3e-36 | DYW family of nucleic acid deaminases |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1934 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 308 |
| Acc36I | ACCTGC | 2 cut(s) | 84, 550 |
| AccBSI | CCGCTC | 3 cut(s) | 413, 1084, 1589 |
| AccI | GTMKAC | 2 cut(s) | 760, 1151 |
| AccII | CGCG | 4 cut(s) | 21, 23, 121, 123 |
| AciI | CCGC | 9 cut(s) | 123, 167, 411, 436, 1084, 1211, 1589, 1805, 2106 |
| AclWI | GGATC | 2 cut(s) | 1267, 1678 |
| AcoI | YGGCCR | 4 cut(s) | 114, 124, 553, 1701 |
| AcsI | RAATTY | 3 cut(s) | 341, 730, 1132 |
| AcuI | CTGAAG | 2 cut(s) | 1113, 1745 |
| AcyI | GRCGYC | 1 cut(s) | 1912 |
| AfaI | GTAC | 7 cut(s) | 335, 428, 564, 792, 1542, 1761, 2045 |
| AfeI | AGCGCT | 1 cut(s) | 141 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1207, 1287, 1653 |
| AflIII | ACRYGT | 1 cut(s) | 330 |
| AgsI | TTSAA | 4 cut(s) | 164, 580, 856, 2192 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1032 |
| AhlI | ACTAGT | 1 cut(s) | 964 |
| AjnI | CCWGG | 3 cut(s) | 111, 404, 1852 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 572, 604 |
| Alw21I | GWGCWC | 2 cut(s) | 772, 2028 |
| Alw26I | GTCTC | 6 cut(s) | 30, 316, 669, 1019, 1839, 2205 |
| AlwI | GGATC | 2 cut(s) | 1267, 1678 |
| Ama87I | CYCGRG | 2 cut(s) | 1287, 1836 |
| Aor51HI | AGCGCT | 1 cut(s) | 141 |
| AoxI | GGCC | 8 cut(s) | 108, 114, 124, 247, 553, 1701, 1807, 1906 |
| ApaI | GGGCCC | 1 cut(s) | 112 |
| ApeKI | GCWGC | 4 cut(s) | 470, 1394, 1408, 1712 |
| ApoI | RAATTY | 3 cut(s) | 341, 730, 1132 |
| AspLEI | GCGC | 6 cut(s) | 23, 123, 142, 224, 1200, 1663 |
| AspS9I | GGNCC | 5 cut(s) | 108, 109, 408, 1087, 1807 |
| AsuC2I | CCSGG | 4 cut(s) | 424, 712, 727, 931 |
| AsuHPI | GGTGA | 4 cut(s) | 394, 1259, 1613, 1811 |
| AsuNHI | GCTAGC | 1 cut(s) | 2062 |
| AvaI | CYCGRG | 2 cut(s) | 1287, 1836 |
| AvaII | GGWCC | 2 cut(s) | 408, 1087 |
| BaeGI | GKGCMC | 1 cut(s) | 112 |
| BalI | TGGCCA | 2 cut(s) | 116, 1703 |
| BanII | GRGCYC | 3 cut(s) | 112, 772, 1641 |
| Bbv12I | GWGCWC | 2 cut(s) | 772, 2028 |
| BbvI | GCAGC | 4 cut(s) | 457, 1381, 1420, 1724 |
| BccI | CCATC | 9 cut(s) | 60, 293, 536, 800, 1319, 1781, 1923, 2055, 2234 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1184, 1218 |
| BciT130I | CCWGG | 3 cut(s) | 113, 406, 1854 |
| BclI | TGATCA | 2 cut(s) | 646, 1552 |
| BcnI | CCSGG | 4 cut(s) | 424, 712, 727, 931 |
| BcoDI | GTCTC | 6 cut(s) | 30, 316, 669, 1019, 1839, 2205 |
| BcuI | ACTAGT | 1 cut(s) | 964 |
| BfaI | CTAG | 3 cut(s) | 387, 965, 2063 |
| BfmI | CTRYAG | 2 cut(s) | 1395, 1406 |
| BfoI | RGCGCY | 2 cut(s) | 143, 1201 |
| BfuAI | ACCTGC | 2 cut(s) | 84, 550 |
| BglII | AGATCT | 1 cut(s) | 982 |
| BisI | GCNGC | 5 cut(s) | 124, 471, 1395, 1409, 1713 |
| BlsI | GCNGC | 5 cut(s) | 125, 472, 1396, 1410, 1714 |
| Bme1390I | CCNGG | 7 cut(s) | 113, 406, 424, 712, 727, 931, 1854 |
| Bme18I | GGWCC | 2 cut(s) | 408, 1087 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1032 |
| BmeT110I | CYCGRG | 2 cut(s) | 1287, 1836 |
| BmgT120I | GGNCC | 5 cut(s) | 108, 109, 408, 1087, 1807 |
| BmiI | GGNNCC | 8 cut(s) | 110, 1088, 1089, 1297, 1501, 1638, 1737, 1851 |
| BmrFI | CCNGG | 7 cut(s) | 113, 406, 424, 712, 727, 931, 1854 |
| BmsI | GCATC | 2 cut(s) | 583, 2186 |
| BmtI | GCTAGC | 1 cut(s) | 2066 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1883, 1915 |
| BpmI | CTGGAG | 3 cut(s) | 1125, 1722, 1923 |
| BpuEI | CTTGAG | 4 cut(s) | 756, 1206, 1352, 1544 |
| BpuMI | CCSGG | 4 cut(s) | 424, 712, 727, 931 |
| Bsa29I | ATCGAT | 1 cut(s) | 780 |
| BsaHI | GRCGYC | 1 cut(s) | 1912 |
| BsaI | GGTCTC | 1 cut(s) | 1839 |
| BsaJI | CCNNGG | 3 cut(s) | 111, 1206, 1666 |
| BsaWI | WCCGGW | 1 cut(s) | 55 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 981, 1011, 2027, 2057 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1207, 1287, 1653 |
| Bse118I | RCCGGY | 1 cut(s) | 555 |
| Bse1I | ACTGG | 2 cut(s) | 1491, 2270 |
| Bse3DI | GCAATG | 2 cut(s) | 2101, 2263 |
| BseBI | CCWGG | 3 cut(s) | 113, 406, 1854 |
| BseCI | ATCGAT | 1 cut(s) | 780 |
| BseDI | CCNNGG | 3 cut(s) | 111, 1206, 1666 |
| BseGI | GGATG | 6 cut(s) | 52, 295, 598, 1000, 1915, 2000 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1207, 1287, 1653 |
| BseMI | GCAATG | 2 cut(s) | 2101, 2263 |
| BseMII | CTCAG | 3 cut(s) | 850, 1014, 1599 |
| BseNI | ACTGG | 2 cut(s) | 1491, 2270 |
| BseRI | GAGGAG | 5 cut(s) | 282, 1451, 1888, 2036, 2048 |
| BseSI | GKGCMC | 1 cut(s) | 112 |
| BseXI | GCAGC | 4 cut(s) | 457, 1381, 1420, 1724 |
| BseYI | CCCAGC | 2 cut(s) | 65, 1863 |
| BsgI | GTGCAG | 2 cut(s) | 242, 945 |
| Bsh1236I | CGCG | 4 cut(s) | 21, 23, 121, 123 |
| BshFI | GGCC | 8 cut(s) | 110, 116, 126, 249, 555, 1703, 1809, 1908 |
| BshVI | ATCGAT | 1 cut(s) | 780 |
| BsiHKAI | GWGCWC | 2 cut(s) | 772, 2028 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1287, 1836 |
| BsiSI | CCGG | 6 cut(s) | 56, 423, 556, 712, 727, 930 |
| BslFI | GGGAC | 2 cut(s) | 1100, 1605 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1207, 1287, 1653 |
| BsmAI | GTCTC | 6 cut(s) | 30, 316, 669, 1019, 1839, 2205 |
| BsmBI | CGTCTC | 2 cut(s) | 30, 669 |
| BsmFI | GGGAC | 2 cut(s) | 1100, 1605 |
| BsmI | GAATGC | 2 cut(s) | 619, 1632 |
| BsnI | GGCC | 8 cut(s) | 110, 116, 126, 249, 555, 1703, 1809, 1908 |
| Bso31I | GGTCTC | 1 cut(s) | 1839 |
| BsoBI | CYCGRG | 2 cut(s) | 1287, 1836 |
| Bsp120I | GGGCCC | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 4 cut(s) | 112, 772, 1641, 2028 |
| Bsp1407I | TGTACA | 2 cut(s) | 790, 1759 |
| Bsp143I | GATC | 7 cut(s) | 646, 781, 982, 1272, 1552, 1670, 1872 |
| BspACI | CCGC | 9 cut(s) | 123, 167, 411, 436, 1084, 1211, 1589, 1805, 2106 |
| BspANI | GGCC | 8 cut(s) | 110, 116, 126, 249, 555, 1703, 1809, 1908 |
| BspCNI | CTCAG | 3 cut(s) | 849, 1015, 1600 |
| BspDI | ATCGAT | 1 cut(s) | 780 |
| BspFNI | CGCG | 4 cut(s) | 21, 23, 121, 123 |
| BspHI | TCATGA | 1 cut(s) | 2166 |
| BspLI | GGNNCC | 8 cut(s) | 110, 1088, 1089, 1297, 1501, 1638, 1737, 1851 |
| BspMAI | CTGCAG | 2 cut(s) | 1399, 1410 |
| BspMI | ACCTGC | 2 cut(s) | 84, 550 |
| BspOI | GCTAGC | 1 cut(s) | 2066 |
| BspPI | GGATC | 2 cut(s) | 1267, 1678 |
| BspTNI | GGTCTC | 1 cut(s) | 1839 |
| BsrBI | CCGCTC | 3 cut(s) | 413, 1084, 1589 |
| BsrDI | GCAATG | 2 cut(s) | 2101, 2263 |
| BsrFI | RCCGGY | 1 cut(s) | 555 |
| BsrGI | TGTACA | 2 cut(s) | 790, 1759 |
| BsrI | ACTGG | 2 cut(s) | 1491, 2270 |
| BssAI | RCCGGY | 1 cut(s) | 555 |
| BssECI | CCNNGG | 3 cut(s) | 111, 1206, 1666 |
| BssMI | GATC | 7 cut(s) | 646, 781, 982, 1272, 1552, 1670, 1872 |
| BssNAI | GTATAC | 1 cut(s) | 1152 |
| BssNI | GRCGYC | 1 cut(s) | 1912 |
| BssT1I | CCWWGG | 1 cut(s) | 1666 |
| Bst1107I | GTATAC | 1 cut(s) | 1152 |
| Bst2UI | CCWGG | 3 cut(s) | 113, 406, 1854 |
| Bst4CI | ACNGT | 7 cut(s) | 372, 824, 1007, 1255, 1698, 1965, 2222 |
| Bst6I | CTCTTC | 6 cut(s) | 155, 165, 215, 1109, 1488, 2013 |
| BstACI | GRCGYC | 1 cut(s) | 1912 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1187 |
| BstAUI | TGTACA | 2 cut(s) | 790, 1759 |
| BstDEI | CTNAG | 7 cut(s) | 352, 521, 836, 891, 1023, 1311, 1608 |
| BstF5I | GGATG | 6 cut(s) | 52, 295, 598, 1000, 1915, 2000 |
| BstFNI | CGCG | 4 cut(s) | 21, 23, 121, 123 |
| BstH2I | RGCGCY | 2 cut(s) | 143, 1201 |
| BstHHI | GCGC | 6 cut(s) | 23, 123, 142, 224, 1200, 1663 |
| BstKTI | GATC | 7 cut(s) | 649, 784, 985, 1275, 1555, 1673, 1875 |
| BstMAI | GTCTC | 6 cut(s) | 30, 316, 669, 1019, 1839, 2205 |
| BstMBI | GATC | 7 cut(s) | 646, 781, 982, 1272, 1552, 1670, 1872 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1187, 1400, 1636, 1709, 2154 |
| BstNI | CCWGG | 3 cut(s) | 113, 406, 1854 |
| BstNSI | RCATGY | 4 cut(s) | 222, 271, 334, 1566 |
| BstSCI | CCNGG | 7 cut(s) | 111, 404, 422, 710, 725, 929, 1852 |
| BstSFI | CTRYAG | 2 cut(s) | 1395, 1406 |
| BstSLI | GKGCMC | 1 cut(s) | 112 |
| BstUI | CGCG | 4 cut(s) | 21, 23, 121, 123 |
| BstV1I | GCAGC | 4 cut(s) | 457, 1381, 1420, 1724 |
| BstX2I | RGATCY | 1 cut(s) | 982 |
| BstYI | RGATCY | 1 cut(s) | 982 |
| BstZ17I | GTATAC | 1 cut(s) | 1152 |
| Bsu15I | ATCGAT | 1 cut(s) | 780 |
| BsuRI | GGCC | 8 cut(s) | 110, 116, 126, 249, 555, 1703, 1809, 1908 |
| BsuTUI | ATCGAT | 1 cut(s) | 780 |
| BtsCI | GGATG | 6 cut(s) | 52, 295, 598, 1000, 1915, 2000 |
| BtsI | GCAGTG | 3 cut(s) | 184, 957, 1403 |
| BtsIMutI | CAGTG | 4 cut(s) | 184, 758, 957, 1403 |
| BveI | ACCTGC | 2 cut(s) | 84, 550 |
| CciI | TCATGA | 1 cut(s) | 2166 |
| CfoI | GCGC | 6 cut(s) | 23, 123, 142, 224, 1200, 1663 |
| Cfr10I | RCCGGY | 1 cut(s) | 555 |
| Cfr13I | GGNCC | 5 cut(s) | 108, 109, 408, 1087, 1807 |
| ClaI | ATCGAT | 1 cut(s) | 780 |
| CseI | GACGC | 4 cut(s) | 12, 829, 1920, 2137 |
| Csp6I | GTAC | 7 cut(s) | 334, 427, 563, 791, 1541, 1760, 2044 |
| CviQI | GTAC | 7 cut(s) | 334, 427, 563, 791, 1541, 1760, 2044 |
| DdeI | CTNAG | 7 cut(s) | 352, 521, 836, 891, 1023, 1311, 1608 |
| DpnI | GATC | 7 cut(s) | 648, 783, 984, 1274, 1554, 1672, 1874 |
| DpnII | GATC | 7 cut(s) | 646, 781, 982, 1272, 1552, 1670, 1872 |
| DraI | TTTAAA | 2 cut(s) | 1170, 2236 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 308 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1032 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 308 |
| EaeI | YGGCCR | 4 cut(s) | 114, 124, 553, 1701 |
| Eam1104I | CTCTTC | 6 cut(s) | 155, 165, 215, 1109, 1488, 2013 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1032 |
| EarI | CTCTTC | 6 cut(s) | 155, 165, 215, 1109, 1488, 2013 |
| Ecl136II | GAGCTC | 1 cut(s) | 770 |
| Eco130I | CCWWGG | 1 cut(s) | 1666 |
| Eco147I | AGGCCT | 1 cut(s) | 249 |
| Eco24I | GRGCYC | 3 cut(s) | 112, 772, 1641 |
| Eco31I | GGTCTC | 1 cut(s) | 1839 |
| Eco47I | GGWCC | 2 cut(s) | 408, 1087 |
| Eco47III | AGCGCT | 1 cut(s) | 141 |
| Eco53kI | GAGCTC | 1 cut(s) | 770 |
| Eco57I | CTGAAG | 2 cut(s) | 1113, 1745 |
| Eco88I | CYCGRG | 2 cut(s) | 1287, 1836 |
| EcoICRI | GAGCTC | 1 cut(s) | 770 |
| EcoO109I | RGGNCCY | 3 cut(s) | 108, 109, 1087 |
| EcoRI | GAATTC | 1 cut(s) | 730 |
| EcoRII | CCWGG | 3 cut(s) | 111, 404, 1852 |
| EcoT14I | CCWWGG | 1 cut(s) | 1666 |
| EcoT22I | ATGCAT | 2 cut(s) | 1564, 1568 |
| EcoT38I | GRGCYC | 3 cut(s) | 112, 772, 1641 |
| ErhI | CCWWGG | 1 cut(s) | 1666 |
| Esp3I | CGTCTC | 2 cut(s) | 30, 669 |
| FaqI | GGGAC | 2 cut(s) | 1100, 1605 |
| FauI | CCCGC | 4 cut(s) | 429, 1077, 1582, 1798 |
| FauNDI | CATATG | 1 cut(s) | 2246 |
| FbaI | TGATCA | 2 cut(s) | 646, 1552 |
| FblI | GTMKAC | 2 cut(s) | 760, 1151 |
| Fnu4HI | GCNGC | 5 cut(s) | 124, 471, 1395, 1409, 1713 |
| FokI | GGATG | 6 cut(s) | 39, 282, 605, 1007, 1902, 1987 |
| FriOI | GRGCYC | 3 cut(s) | 112, 772, 1641 |
| Fsp4HI | GCNGC | 5 cut(s) | 124, 471, 1395, 1409, 1713 |
| FspBI | CTAG | 3 cut(s) | 387, 965, 2063 |
| GlaI | GCGC | 6 cut(s) | 22, 122, 141, 223, 1199, 1662 |
| GluI | GCNGC | 5 cut(s) | 124, 471, 1395, 1409, 1713 |
| GsaI | CCCAGC | 2 cut(s) | 69, 1867 |
| GsuI | CTGGAG | 3 cut(s) | 1125, 1722, 1923 |
| HaeII | RGCGCY | 2 cut(s) | 143, 1201 |
| HaeIII | GGCC | 8 cut(s) | 110, 116, 126, 249, 555, 1703, 1809, 1908 |
| HapII | CCGG | 6 cut(s) | 56, 423, 556, 712, 727, 930 |
| HgaI | GACGC | 4 cut(s) | 12, 829, 1920, 2137 |
| HhaI | GCGC | 6 cut(s) | 23, 123, 142, 224, 1200, 1663 |
| Hin1I | GRCGYC | 1 cut(s) | 1912 |
| Hin6I | GCGC | 6 cut(s) | 21, 121, 140, 222, 1198, 1661 |
| HinP1I | GCGC | 6 cut(s) | 21, 121, 140, 222, 1198, 1661 |
| HincII | GTYRAC | 2 cut(s) | 761, 1573 |
| HindII | GTYRAC | 2 cut(s) | 761, 1573 |
| HindIII | AAGCTT | 2 cut(s) | 972, 1613 |
| HinfI | GANTC | 8 cut(s) | 707, 715, 1439, 1506, 1514, 1643, 1927, 2213 |
| HpaII | CCGG | 6 cut(s) | 56, 423, 556, 712, 727, 930 |
| HphI | GGTGA | 4 cut(s) | 394, 1259, 1613, 1811 |
| Hpy166II | GTNNAC | 8 cut(s) | 548, 565, 696, 761, 1056, 1152, 1573, 2099 |
| Hpy188I | TCNGA | 6 cut(s) | 982, 1024, 1081, 1786, 1877, 2141 |
| Hpy8I | GTNNAC | 8 cut(s) | 548, 565, 696, 761, 1056, 1152, 1573, 2099 |
| Hpy99I | CGWCG | 3 cut(s) | 762, 1914, 2153 |
| HpyAV | CCTTC | 5 cut(s) | 682, 1165, 1720, 1813, 1840 |
| HpyCH4III | ACNGT | 7 cut(s) | 372, 824, 1007, 1255, 1698, 1965, 2222 |
| HpyCH4IV | ACGT | 2 cut(s) | 606, 801 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1187, 1400, 1636, 1709, 2154 |
| HpyF3I | CTNAG | 7 cut(s) | 352, 521, 836, 891, 1023, 1311, 1608 |
| HpySE526I | ACGT | 2 cut(s) | 606, 801 |
| Hsp92I | GRCGYC | 1 cut(s) | 1912 |
| HspAI | GCGC | 6 cut(s) | 21, 121, 140, 222, 1198, 1661 |
| KflI | GGGWCCC | 1 cut(s) | 1087 |
| KroI | GCCGGC | 1 cut(s) | 555 |
| KroNI | GCCGGC | 1 cut(s) | 557 |
| Ksp22I | TGATCA | 2 cut(s) | 646, 1552 |
| Kzo9I | GATC | 7 cut(s) | 646, 781, 982, 1272, 1552, 1670, 1872 |
| LmnI | GCTCC | 8 cut(s) | 767, 1144, 1301, 1636, 1668, 1741, 2023, 2035 |
| Lsp1109I | GCAGC | 4 cut(s) | 457, 1381, 1420, 1724 |
| LweI | GCATC | 2 cut(s) | 583, 2186 |
| MaeI | CTAG | 3 cut(s) | 387, 965, 2063 |
| MaeII | ACGT | 2 cut(s) | 606, 801 |
| MaeIII | GTNAC | 4 cut(s) | 400, 886, 955, 1247 |
| MalI | GATC | 7 cut(s) | 648, 783, 984, 1274, 1554, 1672, 1874 |
| MbiI | CCGCTC | 3 cut(s) | 413, 1084, 1589 |
| MboI | GATC | 7 cut(s) | 646, 781, 982, 1272, 1552, 1670, 1872 |
| MfeI | CAATTG | 3 cut(s) | 451, 1161, 2039 |
| MflI | RGATCY | 1 cut(s) | 982 |
| MhlI | GDGCHC | 4 cut(s) | 112, 772, 1641, 2028 |
| MlsI | TGGCCA | 2 cut(s) | 116, 1703 |
| MluNI | TGGCCA | 2 cut(s) | 116, 1703 |
| MlyI | GAGTC | 2 cut(s) | 1508, 2207 |
| MmeI | TCCRAC | 2 cut(s) | 265, 339 |
| Mox20I | TGGCCA | 2 cut(s) | 116, 1703 |
| Mph1103I | ATGCAT | 2 cut(s) | 1564, 1568 |
| MroNI | GCCGGC | 1 cut(s) | 555 |
| MscI | TGGCCA | 2 cut(s) | 116, 1703 |
| MseI | TTAA | 7 cut(s) | 969, 1169, 1230, 1431, 1859, 1967, 2235 |
| MslI | CAYNNNNRTG | 7 cut(s) | 329, 479, 626, 654, 804, 1281, 2052 |
| Msp20I | TGGCCA | 2 cut(s) | 116, 1703 |
| MspA1I | CMGCKG | 2 cut(s) | 436, 1715 |
| MspI | CCGG | 6 cut(s) | 56, 423, 556, 712, 727, 930 |
| MspR9I | CCNGG | 7 cut(s) | 113, 406, 424, 712, 727, 931, 1854 |
| MunI | CAATTG | 3 cut(s) | 451, 1161, 2039 |
| Mva1269I | GAATGC | 2 cut(s) | 619, 1632 |
| MvaI | CCWGG | 3 cut(s) | 113, 406, 1854 |
| MvnI | CGCG | 4 cut(s) | 21, 23, 121, 123 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1187, 1400, 1636, 1709, 2154 |
| NaeI | GCCGGC | 1 cut(s) | 557 |
| NciI | CCSGG | 4 cut(s) | 424, 712, 727, 931 |
| NdeI | CATATG | 1 cut(s) | 2246 |
| NdeII | GATC | 7 cut(s) | 646, 781, 982, 1272, 1552, 1670, 1872 |
| NgoMIV | GCCGGC | 1 cut(s) | 555 |
| NheI | GCTAGC | 1 cut(s) | 2062 |
| NlaIV | GGNNCC | 8 cut(s) | 110, 1088, 1089, 1297, 1501, 1638, 1737, 1851 |
| NmeAIII | GCCGAG | 2 cut(s) | 75, 1187 |
| NmuCI | GTSAC | 4 cut(s) | 400, 886, 955, 1247 |
| NsiI | ATGCAT | 2 cut(s) | 1564, 1568 |
| NspI | RCATGY | 4 cut(s) | 222, 271, 334, 1566 |
| PaeI | GCATGC | 2 cut(s) | 222, 1566 |
| PaeR7I | CTCGAG | 1 cut(s) | 1836 |
| PagI | TCATGA | 1 cut(s) | 2166 |
| PceI | AGGCCT | 1 cut(s) | 249 |
| PciI | ACATGT | 1 cut(s) | 330 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 25, 1591 |
| PctI | GAATGC | 2 cut(s) | 619, 1632 |
| PdiI | GCCGGC | 1 cut(s) | 557 |
| PfeI | GAWTC | 6 cut(s) | 707, 715, 1439, 1506, 1643, 1927 |
| PflFI | GACNNNGTC | 1 cut(s) | 1253 |
| PfoI | TCCNGGA | 2 cut(s) | 710, 725 |
| PkrI | GCNGC | 5 cut(s) | 125, 472, 1396, 1410, 1714 |
| PleI | GAGTC | 2 cut(s) | 1508, 2207 |
| PpsI | GAGTC | 2 cut(s) | 1508, 2207 |
| PpuMI | RGGWCCY | 1 cut(s) | 1087 |
| PscI | ACATGT | 1 cut(s) | 330 |
| PsiI | TTATAA | 1 cut(s) | 1934 |
| Psp124BI | GAGCTC | 1 cut(s) | 772 |
| Psp5II | RGGWCCY | 1 cut(s) | 1087 |
| Psp6I | CCWGG | 3 cut(s) | 111, 404, 1852 |
| PspFI | CCCAGC | 2 cut(s) | 65, 1863 |
| PspGI | CCWGG | 3 cut(s) | 111, 404, 1852 |
| PspN4I | GGNNCC | 8 cut(s) | 110, 1088, 1089, 1297, 1501, 1638, 1737, 1851 |
| PspOMI | GGGCCC | 1 cut(s) | 108 |
| PspPI | GGNCC | 5 cut(s) | 108, 109, 408, 1087, 1807 |
| PspPPI | RGGWCCY | 1 cut(s) | 1087 |
| PstI | CTGCAG | 2 cut(s) | 1399, 1410 |
| PsuI | RGATCY | 1 cut(s) | 982 |
| PsyI | GACNNNGTC | 1 cut(s) | 1253 |
| PvuII | CAGCTG | 1 cut(s) | 1715 |
| RsaI | GTAC | 7 cut(s) | 335, 428, 564, 792, 1542, 1761, 2045 |
| RsaNI | GTAC | 7 cut(s) | 334, 427, 563, 791, 1541, 1760, 2044 |
| RseI | CAYNNNNRTG | 7 cut(s) | 329, 479, 626, 654, 804, 1281, 2052 |
| SacI | GAGCTC | 1 cut(s) | 772 |
| SalI | GTCGAC | 1 cut(s) | 759 |
| SaqAI | TTAA | 7 cut(s) | 969, 1169, 1230, 1431, 1859, 1967, 2235 |
| SatI | GCNGC | 5 cut(s) | 124, 471, 1395, 1409, 1713 |
| Sau3AI | GATC | 7 cut(s) | 646, 781, 982, 1272, 1552, 1670, 1872 |
| Sau96I | GGNCC | 5 cut(s) | 108, 109, 408, 1087, 1807 |
| SchI | GAGTC | 2 cut(s) | 1508, 2207 |
| ScrFI | CCNGG | 7 cut(s) | 113, 406, 424, 712, 727, 931, 1854 |
| SduI | GDGCHC | 4 cut(s) | 112, 772, 1641, 2028 |
| SfaNI | GCATC | 2 cut(s) | 583, 2186 |
| SfcI | CTRYAG | 2 cut(s) | 1395, 1406 |
| Sfr274I | CTCGAG | 1 cut(s) | 1836 |
| SinI | GGWCC | 2 cut(s) | 408, 1087 |
| SlaI | CTCGAG | 1 cut(s) | 1836 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 329, 479, 626, 654, 804, 1281, 2052 |
| SmlI | CTYRAG | 5 cut(s) | 771, 1221, 1367, 1523, 1836 |
| SmoI | CTYRAG | 5 cut(s) | 771, 1221, 1367, 1523, 1836 |
| SpeI | ACTAGT | 1 cut(s) | 964 |
| SphI | GCATGC | 2 cut(s) | 222, 1566 |
| SseBI | AGGCCT | 1 cut(s) | 249 |
| SsiI | CCGC | 9 cut(s) | 123, 167, 411, 436, 1084, 1211, 1589, 1805, 2106 |
| SspI | AATATT | 1 cut(s) | 1074 |
| SspMI | CTAG | 3 cut(s) | 387, 965, 2063 |
| SstI | GAGCTC | 1 cut(s) | 772 |
| StuI | AGGCCT | 1 cut(s) | 249 |
| StyD4I | CCNGG | 7 cut(s) | 111, 404, 422, 710, 725, 929, 1852 |
| StyI | CCWWGG | 1 cut(s) | 1666 |
| TaaI | ACNGT | 7 cut(s) | 372, 824, 1007, 1255, 1698, 1965, 2222 |
| TaiI | ACGT | 2 cut(s) | 609, 804 |
| TaqI | TCGA | 7 cut(s) | 375, 442, 760, 780, 1585, 1837, 2151 |
| TatI | WGTACW | 2 cut(s) | 790, 1759 |
| TauI | GCSGC | 1 cut(s) | 126 |
| TfiI | GAWTC | 6 cut(s) | 707, 715, 1439, 1506, 1643, 1927 |
| Tru1I | TTAA | 7 cut(s) | 969, 1169, 1230, 1431, 1859, 1967, 2235 |
| Tru9I | TTAA | 7 cut(s) | 969, 1169, 1230, 1431, 1859, 1967, 2235 |
| TscAI | CASTG | 4 cut(s) | 191, 758, 964, 1410 |
| TseFI | GTSAC | 4 cut(s) | 400, 886, 955, 1247 |
| TseI | GCWGC | 4 cut(s) | 470, 1394, 1408, 1712 |
| Tsp45I | GTSAC | 4 cut(s) | 400, 886, 955, 1247 |
| TspDTI | ATGAA | 9 cut(s) | 393, 1205, 1737, 1841, 2099, 2103, 2144, 2155, 2183 |
| TspGWI | ACGGA | 1 cut(s) | 1636 |
| TspRI | CASTG | 4 cut(s) | 191, 758, 964, 1410 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1253 |
| VpaK11BI | GGWCC | 2 cut(s) | 408, 1087 |
| XapI | RAATTY | 3 cut(s) | 341, 730, 1132 |
| XceI | RCATGY | 4 cut(s) | 222, 271, 334, 1566 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2237 |
| XhoI | CTCGAG | 1 cut(s) | 1836 |
| XmiI | GTMKAC | 2 cut(s) | 760, 1151 |
| XspI | CTAG | 3 cut(s) | 387, 965, 2063 |
| Zsp2I | ATGCAT | 2 cut(s) | 1564, 1568 |