MD02G1273500.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
32809319 .. 32811838
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1273500.v1.1.491

Sequence Viewer

Length: 2013 bp
ATGGCTGCAGGAAGAGTGCTACCCTTTGCAATTAGTTTATTCTTCGTGTTTCTAGTTGTTGGCTTTTTCAGTGTAGTTTGCAGTGCTAAGGATGATCATCCCAATAAGTGTGCACCGTCTTCCTGTGGAATCATCCCCAACATAAGCTACCCTTTCCGACTGAACAATGACCCGGACAACTGTGGTGACCAAAGGTATAACCTGTCTTGTGAGAATAATCGAACAGTATTGTACTTTTATTCAGGAAAATACTATGTCCAGGCAATCAATTATGATAACTACACAATCCGAGTTGTGGATGCCAATCTTCGTGAGGGTGACTGCTCTTCAATGCCTCGTTATTCATTGGCCGTATATAACTTCAGGAGCCCATATCCATATAACTTTTGTCAAAGGACAAAAAAAAGGATTGGGAAGTTCGATGTCTTAGACTGCATAGAACTGTCGAAGCCTGTAATATTCATGAGCTGTGAAACCCAAGTGAATTCTCCTCTCTATGTGGATACTTCCCCTTGCACTAATCTTATGAGTAGCTTAAGTGGGCATGTTTTTGTTAAGATTGGTCATTTAAATGCCTCGGATATGAGGGATTTGTGCCGAATAGATCTTACAGTTGCAACATCGTGGCCTGGTGCAAACGACACGAACATCACCTATGTAGACATCCACAAAGAGCTAGTCTATGGGTTTGAACTTTCATGGTTGCAGGGCAAATCCAGAGATTATAGTTGGCGGAGTACTTGCTACATCGATTCCGACACAGGGAAAGCAGCCTGTGGTTCTAACAGCTTCATGAAGCTGATCGTTGACTACCTAGAAACTATCTTATCTTTTTCGGTCTCCATTACAGTTATATTGGTTTTTGGAGCAAGAACTGTATTCGGCGTTCCGTGTGTTATTGTGTTTTTAATCTATAAATGGAAAAGGCGGCACTTATCAATGTATGTCCATATTGAAGAATTCTTACAAAGTCACAACAACCTCACGCCAATAAGGTACTCCTACTCCGACATCAAGAAAATGACCAGAGGATTCAAGGACAAATTGGGCGAAGGAGGTTACGGCTCTGTCTACAAAGGAAAGCTTCGTAGCGGCCGCTTTGTGGGGATTAAGATGCTGGGTAAGTCCAAAGCTACTGGACAAGATTTTATCAATGAAGTTGGTACCATTGGAAGGATTCACCATGTAAACGTGGTGCAACTAATTGGGTACTGTGTCGAGGGGTCAAAGCGTGCTCTTGTATACGAGTTCATGTCAAATGGATCTCTCGATAGACACATATTTTCCAAAGAAGGACCCGTCTCCTTGAGTTTCAAGAGAGCTTTTGAAATTTCACTTGGTGTGGCTCGTGGCATCGGTTATCTACATCAAGGATGTGACATGCAGATTTTGCATTTTGATATCAAGCCTCACAACATTCTTCTCGATGACAATTATGTTCCCAAGATTTCTGATTTTGGGCTAGCTAGACTCTGTCCATTAGATGATAGCAGCTTAACGTTGACCGCAGCAAGAGGAACTATCGGATACATAGCTCCTGAGTTATTCTACAAAAATATTGGAGGTGTGTCTAACAAAGCAGACATCTATAGTTTCGGAATGCTACTGATGGAAATTGCAGGCAGAAGAAAGAACTTGAACACAGTTGCAGCACATGAAAGCCAAATTTACTTTCCTTCATGGGTTTATGACCAATTCAGCGAAGGAAACGACATAGAAATTGAAGATGCCACGGAAGAAGAAAATGAGATAACAAAGAAGATGCTTATTGTTGCTCTATGGTGCATCCAATTCAAGCCTAGTGACCGTCCTGCTTCGATGAACAAAGTAGTGGAGATGCTTGAAGGAGAAATTGAGTGTCTTGAAATGCCTCCAAAGCCTTTCCTATACCCACAAGAGAAACCAGTGGTGGATGATGAAGATGATTCAGGAACAACATGGTCATCAGGACCATCAAAAGATGACGTCCTAGAGTCACAAAGTTTAATTCAGAATGCTGATGGAATAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

671

Amino Acids

75.47

Weight (kDa)

6.1

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 37 - 100 1.2e-18 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 345 - 612 1.9e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 346 - 607 1.2e-42 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66910 AT1G66910 AT1G66920 AT1G66920 AT1G66920 AT1G66930 AT1G66930 AT1G66930 AT1G67000 AT1G70250 AT4G18250 AT5G38240 AT5G38240 AT5G38240 AT5G38250 AT5G38260 AT5G38280 AT5G38280
fragaria_vesca FvH4_1g03330 FvH4_4g26890 FvH4_4g26891 FvH4_4g26892 FvH4_4g26892 FvH4_4g26892 FvH4_4g26893 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26950 FvH4_4g26961 FvH4_4g26961 FvH4_4g34450 FvH4_4g34450 FvH4_4g34450 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g22251 FvH4_6g01490 FvH4_6g01490 FvH4_6g01490 FvH4_6g01502 FvH4_6g23830 FvH4_6g28430 FvH4_6g28450 FvH4_6g47250 FvH4_6g52670 FvH4_7g04150 FvH4_7g04150 FvH4_7g04160 FvH4_7g04170 FvH4_7g05990 FvH4_7g06001 FvH4_7g06010 FvH4_7g06010 FvH4_7g06060 FvH4_7g20630 FvH4_7g20630
malus_domestica MD01G1059700.v1.1 MD02G1233600.v1.1 MD02G1234400.v1.1 MD02G1234900.v1.1 MD02G1235600.v1.1 MD02G1245700.v1.1 MD02G1245800.v1.1 MD02G1246200.v1.1 MD02G1246300.v1.1 MD02G1246700.v1.1 MD02G1246800.v1.1 MD02G1247100.v1.1 MD02G1247300.v1.1 MD02G1247400.v1.1 MD02G1249300.v1.1 MD02G1249500.v1.1 MD02G1249700.v1.1 MD02G1250000.v1.1 MD02G1250200.v1.1 MD02G1250800.v1.1 MD02G1251800.v1.1 MD02G1252600.v1.1 MD02G1253600.v1.1 MD02G1273500.v1.1 MD02G1274000.v1.1 MD02G1274500.v1.1 MD04G1233100.v1.1 MD06G1136000.v1.1 MD06G1136200.v1.1 MD06G1136300.v1.1 MD06G1218300.v1.1 MD06G1218500.v1.1 MD06G1218600.v1.1 MD06G1219100.v1.1 MD07G1070000.v1.1 MD07G1070400.v1.1 MD07G1070700.v1.1 MD07G1071000.v1.1 MD07G1071100.v1.1 MD07G1137900.v1.1 MD07G1138000.v1.1 MD09G1255100.v1.1 MD12G1250700.v1.1 MD12G1251100.v1.1 MD12G1251500.v1.1 MD13G1036700.v1.1 MD13G1037900.v1.1 MD13G1038000.v1.1 MD16G1037900.v1.1 MD16G1038000.v1.1 MD16G1038600.v1.1 MD16G1038700.v1.1 MD16G1039200.v1.1 MD16G1039300.v1.1 MD16G1039500.v1.1
prunus_persica Prupe.1G315000_v2.0.a1 Prupe.1G315000_v2.0.a1 Prupe.1G315100_v2.0.a1 Prupe.1G315300_v2.0.a1 Prupe.1G315400_v2.0.a1 Prupe.1G496900_v2.0.a1 Prupe.2G033400_v2.0.a1 Prupe.2G047500_v2.0.a1 Prupe.2G048700_v2.0.a1 Prupe.2G067100_v2.0.a1 Prupe.2G087100_v2.0.a1 Prupe.2G087500_v2.0.a1 Prupe.2G087800_v2.0.a1 Prupe.2G088100_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088800_v2.0.a1 Prupe.2G092500_v2.0.a1 Prupe.2G092800_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093100_v2.0.a1 Prupe.2G093200_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093400_v2.0.a1 Prupe.2G093500_v2.0.a1 Prupe.2G093600_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G103300_v2.0.a1 Prupe.2G103900_v2.0.a1 Prupe.2G312200_v2.0.a1 Prupe.3G145200_v2.0.a1 Prupe.3G145600_v2.0.a1 Prupe.3G145700_v2.0.a1 Prupe.3G145800_v2.0.a1 Prupe.3G145900_v2.0.a1 Prupe.3G146000_v2.0.a1 Prupe.3G146100_v2.0.a1 Prupe.3G146200_v2.0.a1 Prupe.3G146600_v2.0.a1 Prupe.5G223800_v2.0.a1 Prupe.6G137800_v2.0.a1 Prupe.6G138000_v2.0.a1 Prupe.6G141600_v2.0.a1 Prupe.6G141900_v2.0.a1 Prupe.6G142000_v2.0.a1 Prupe.6G142100_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G352800_v2.0.a1 Prupe.6G352800_v2.0.a1
pyrus_communis pycom01g08840 pycom01g08860 pycom01g08920 pycom01g08960 pycom01g08990 pycom01g09000 pycom02g20230 pycom02g21120 pycom02g21140 pycom02g21350 pycom02g21360 pycom02g21400 pycom02g21510 pycom02g23440 pycom02g23450 pycom02g23480 pycom02g23490 pycom04g20650 pycom04g20690 pycom04g20710 pycom04g20730 pycom06g12760 pycom06g19500 pycom06g19510 pycom06g19530 pycom06g19540 pycom06g19570 pycom12g23070 pycom12g23080 pycom12g23100 pycom13g03140 pycom13g03250 pycom13g03290 pycom13g03300 pycom14g19010 pycom16g03300 pycom16g03320 pycom16g03370 pycom16g03380 pycom16g03400 pycom17g24970 pycom17g25020 pycom17g25150 pycom17g25180 pycom17g25240 pycom17g25250
rosa_chinensis RchiOBHm_Chr1g0325081 RchiOBHm_Chr1g0325091 RchiOBHm_Chr1g0325111 RchiOBHm_Chr1g0325131 RchiOBHm_Chr1g0328221 RchiOBHm_Chr1g0328241 RchiOBHm_Chr1g0328281 RchiOBHm_Chr1g0328331 RchiOBHm_Chr1g0328371 RchiOBHm_Chr1g0328401 RchiOBHm_Chr1g0328481 RchiOBHm_Chr1g0328501 RchiOBHm_Chr1g0328591 RchiOBHm_Chr1g0328601 RchiOBHm_Chr1g0328751 RchiOBHm_Chr1g0329621 RchiOBHm_Chr1g0329631 RchiOBHm_Chr1g0333261 RchiOBHm_Chr1g0333291 RchiOBHm_Chr1g0333331 RchiOBHm_Chr1g0333351 RchiOBHm_Chr1g0333441 RchiOBHm_Chr1g0333481 RchiOBHm_Chr1g0333571 RchiOBHm_Chr1g0333611 RchiOBHm_Chr1g0334191 RchiOBHm_Chr1g0334281 RchiOBHm_Chr1g0334791 RchiOBHm_Chr1g0334801 RchiOBHm_Chr1g0334831 RchiOBHm_Chr1g0334841 RchiOBHm_Chr1g0384001 RchiOBHm_Chr2g0138701 RchiOBHm_Chr2g0166291 RchiOBHm_Chr2g0166311 RchiOBHm_Chr2g0166321 RchiOBHm_Chr3g0449131 RchiOBHm_Chr3g0449161 RchiOBHm_Chr3g0449331 RchiOBHm_Chr3g0449361 RchiOBHm_Chr3g0449381 RchiOBHm_Chr3g0482511 RchiOBHm_Chr3g0482521 RchiOBHm_Chr3g0482701 RchiOBHm_Chr4g0405811 RchiOBHm_Chr4g0434521 RchiOBHm_Chr4g0434661 RchiOBHm_Chr4g0434681 RchiOBHm_Chr4g0434701 RchiOBHm_Chr4g0434711 RchiOBHm_Chr5g0047441 RchiOBHm_Chr5g0047581 RchiOBHm_Chr5g0047621 RchiOBHm_Chr5g0047671 RchiOBHm_Chr5g0047761 RchiOBHm_Chr5g0047851 RchiOBHm_Chr5g0047981 RchiOBHm_Chr5g0048071 RchiOBHm_Chr5g0059221 RchiOBHm_Chr5g0059231 RchiOBHm_Chr5g0078441 RchiOBHm_Chr6g0264171 RchiOBHm_Chr6g0264401 RchiOBHm_Chr6g0264411 RchiOBHm_Chr6g0273031 RchiOBHm_Chr6g0283331 RchiOBHm_Chr7g0185621 RchiOBHm_Chr7g0185831 RchiOBHm_Chr7g0185841 RchiOBHm_Chr7g0185851 RchiOBHm_Chr7g0185861 RchiOBHm_Chr7g0185871 RchiOBHm_Chr7g0185881 RchiOBHm_Chr7g0185901 RchiOBHm_Chr7g0185911 RchiOBHm_Chr7g0185931 RchiOBHm_Chr7g0185951 RchiOBHm_Chr7g0185991 RchiOBHm_Chr7g0186011 RchiOBHm_Chr7g0201241 RchiOBHm_Chr7g0209921
rosa_laevigata RLG00000004874 RLG00000004876 RLG00000004878 RLG00000004879 RLG00000004880 RLG00000004881 RLG00000006656 RLG00000006657 RLG00000006659 RLG00000006666 RLG00000008822 RLG00000008823 RLG00000014282 RLG00000019268 RLG00000020174 RLG00000021604 RLG00000021605 RLG00000021606 RLG00000023348 RLG00000024362 RLG00000025836 RLG00000025838 RLG00000025848 RLG00000025849 RLG00000025850 RLG00000029421 RLG00000029464 RLG00000029467 RLG00000029469 RLG00000029470 RLG00000029471 RLG00000029547 RLG00000029552 RLG00000029603 RLG00000029604 RLG00000029612 RLG00000029613 RLG00000029617 RLG00000029920 RLG00000029923 RLG00000029924 RLG00000029927 RLG00000029930 RLG00000029933 RLG00000029941 RLG00000030158 RLG00000030159 RLG00000034494 RLG00000035280 RLG00000035281
rosa_multiflora Rmu_co8033562.1_g000001 Rmu_co8168632.1_g000001 Rmu_co8248815.1_g000001 Rmu_co8346553.1_g000001 Rmu_co8352941.1_g000001 Rmu_co8372625.1_g000001 Rmu_co8486819.1_g000001 Rmu_sc0000148.1_g000013 Rmu_sc0000148.1_g000033 Rmu_sc0000148.1_g000045 Rmu_sc0000148.1_g000075 Rmu_sc0000194.1_g000011 Rmu_sc0000194.1_g000015 Rmu_sc0000194.1_g000018 Rmu_sc0000215.1_g000021 Rmu_sc0000494.1_g000001 Rmu_sc0000494.1_g000016 Rmu_sc0000574.1_g000038 Rmu_sc0000574.1_g000040 Rmu_sc0000580.1_g000027 Rmu_sc0000580.1_g000029 Rmu_sc0000725.1_g000001 Rmu_sc0000725.1_g000002 Rmu_sc0000725.1_g000005 Rmu_sc0000725.1_g000019 Rmu_sc0000895.1_g000001 Rmu_sc0000982.1_g000004 Rmu_sc0000982.1_g000034 Rmu_sc0000982.1_g000035 Rmu_sc0000982.1_g000087 Rmu_sc0000982.1_g000107 Rmu_sc0001009.1_g000033 Rmu_sc0001009.1_g000036 Rmu_sc0001129.1_g000001 Rmu_sc0001200.1_g000018 Rmu_sc0001234.1_g000006 Rmu_sc0001349.1_g000008 Rmu_sc0001563.1_g000027 Rmu_sc0001563.1_g000028 Rmu_sc0001563.1_g000038 Rmu_sc0001563.1_g000046 Rmu_sc0001654.1_g000006 Rmu_sc0001654.1_g000007 Rmu_sc0001829.1_g000005 Rmu_sc0002107.1_g000004 Rmu_sc0002107.1_g000007 Rmu_sc0002107.1_g000008 Rmu_sc0002548.1_g000036 Rmu_sc0002955.1_g000013 Rmu_sc0002955.1_g000029 Rmu_sc0002965.1_g000002 Rmu_sc0002965.1_g000003 Rmu_sc0002965.1_g000017 Rmu_sc0002965.1_g000027 Rmu_sc0002965.1_g000028 Rmu_sc0002969.1_g000010 Rmu_sc0002983.1_g000033 Rmu_sc0003166.1_g000001 Rmu_sc0003441.1_g000001 Rmu_sc0003441.1_g000010 Rmu_sc0003441.1_g000011 Rmu_sc0003776.1_g000034 Rmu_sc0003776.1_g000035 Rmu_sc0004178.1_g000005 Rmu_sc0004241.1_g000010 Rmu_sc0004356.1_g000003 Rmu_sc0004470.1_g000014 Rmu_sc0004470.1_g000018 Rmu_sc0004538.1_g000009 Rmu_sc0004646.1_g000041 Rmu_sc0004736.1_g000001 Rmu_sc0004736.1_g000016 Rmu_sc0004736.1_g000020 Rmu_sc0004753.1_g000001 Rmu_sc0004753.1_g000012 Rmu_sc0004805.1_g000025 Rmu_sc0004874.1_g000010 Rmu_sc0005613.1_g000002 Rmu_sc0005665.1_g000006 Rmu_sc0005665.1_g000022 Rmu_sc0005665.1_g000024 Rmu_sc0005665.1_g000030 Rmu_sc0005665.1_g000032 Rmu_sc0005665.1_g000034 Rmu_sc0005665.1_g000036 Rmu_sc0005665.1_g000037 Rmu_sc0005665.1_g000039 Rmu_sc0005783.1_g000007 Rmu_sc0005899.1_g000014 Rmu_sc0006031.1_g000005 Rmu_sc0006031.1_g000008 Rmu_sc0006661.1_g000006 Rmu_sc0006959.1_g000006 Rmu_sc0006959.1_g000008 Rmu_sc0006959.1_g000013 Rmu_sc0007214.1_g000004 Rmu_sc0007477.1_g000006 Rmu_sc0007681.1_g000001 Rmu_sc0007681.1_g000005 Rmu_sc0008439.1_g000002 Rmu_sc0008439.1_g000006 Rmu_sc0009205.1_g000009 Rmu_sc0009205.1_g000024 Rmu_sc0009869.1_g000001 Rmu_sc0009881.1_g000003 Rmu_sc0013038.1_g000007 Rmu_sc0013038.1_g000010 Rmu_sc0016170.1_g000010 Rmu_sc0016170.1_g000016 Rmu_sc0016751.1_g000005 Rmu_sc0017361.1_g000001 Rmu_sc0021068.1_g000001 Rmu_sc0021282.1_g000001 Rmu_sc0024214.1_g000002 Rmu_sc0025695.1_g000001 Rmu_sc0028145.1_g000002 Rmu_sc0036877.1_g000001 Rmu_sc0038968.1_g000001 Rmu_ssc0000047.1_g000006 Rmu_ssc0000047.1_g000007 Rmu_ssc0000388.1_g000041
rosa_roxburghii Rroxscaffold_176G00431510 Rroxscaffold_176G00431520 Rroxscaffold_1G00021210 Rroxscaffold_1G00033850 Rroxscaffold_1G00033940 Rroxscaffold_2G00085010 Rroxscaffold_3G00227760 Rroxscaffold_3G00248800 Rroxscaffold_3G00268520 Rroxscaffold_3G00268550 Rroxscaffold_3G00268590 Rroxscaffold_3G00268600 Rroxscaffold_4G00316560 Rroxscaffold_4G00316920 Rroxscaffold_4G00316930 Rroxscaffold_4G00317380 Rroxscaffold_4G00317420 Rroxscaffold_4G00317550 Rroxscaffold_4G00317560 Rroxscaffold_4G00317640 Rroxscaffold_4G00317660 Rroxscaffold_4G00320870 Rroxscaffold_4G00320880 Rroxscaffold_4G00321480 Rroxscaffold_4G00321690 Rroxscaffold_4G00321890 Rroxscaffold_5G00350290 Rroxscaffold_5G00375840 Rroxscaffold_5G00375890 Rroxscaffold_5G00375910 Rroxscaffold_5G00375920 Rroxscaffold_6G00398920 Rroxscaffold_6G00399010 Rroxscaffold_6G00399320 Rroxscaffold_6G00415790 Rroxscaffold_6G00427220 Rroxscaffold_6G00427340 Rroxscaffold_7G00203530
rosa_rugosa Rorug01G0049600 Rorug01G0073600.1 Rorug01G0074600 Rorug01G0074900 Rorug01G0075000 Rorug01G0075100 Rorug01G0075400 Rorug01G0081300 Rorug01G0081400 Rorug01G0103400 Rorug01G0103500 Rorug01G0108300 Rorug01G0108400 Rorug01G0108600 Rorug01G0108700 Rorug01G0109300 Rorug01G0110000 Rorug01G0110600 Rorug01G0111900 Rorug01G0116400 Rorug01G0116500 Rorug01G0116900 Rorug01G0117000 Rorug02G0305700 Rorug02G0305900 Rorug02G0521800 Rorug02G0521900 Rorug02G0522000 Rorug02G0522000 Rorug02G0522100 Rorug02G0618100 Rorug02G0618200 Rorug02G0618500 Rorug02G0619900 Rorug02G0620000 Rorug02G0620100 Rorug02G0620200 Rorug03G0100200 Rorug03G0197900 Rorug04G0062400 Rorug04G0277100 Rorug04G0277500 Rorug04G0277500 Rorug04G0277600 Rorug04G0277600 Rorug04G0277700 Rorug05G0156000.1 Rorug05G0236300 Rorug05G0236300 Rorug05G0236300 Rorug05G0236500 Rorug05G0236600 Rorug06G0008000 Rorug06G0008100 Rorug06G0008400 Rorug06G0008500 Rorug06G0008600 Rorug06G0008700 Rorug06G0009400 Rorug06G0009500 Rorug06G0009600 Rorug06G0030300 Rorug06G0087000 Rorug06G0099800 Rorug06G0471600 Rorug06G0471600 Rorug06G0471700 Rorug07G0117400
rosa_samantha Rh1AG090600 Rh1AG092700 Rh1AG093100 Rh1AG093800 Rh1AG131300 Rh1AG131600 Rh1AG132000 Rh1AG133000 Rh1AG140900 Rh1AG165100 Rh1BG072500 Rh1BG074100 Rh1BG074300 Rh1BG074800 Rh1BG074900 Rh1BG100800 Rh1BG101000 Rh1BG101400 Rh1BG108200 Rh1CG095600 Rh1CG125200 Rh1CG125500 Rh1CG125800 Rh1CG132800 Rh1DG095200 Rh1DG095600 Rh1DG095700 Rh1DG096400 Rh1DG096900 Rh1DG097000 Rh1DG136700 Rh1DG137000 Rh1DG137200 Rh1DG137900 Rh1DG138200 Rh1DG138400 Rh1DG138800 Rh1DG139200 Rh1DG142400 Rh1DG145000 Rh2AG588100 Rh2BG460400 Rh2BG600100 Rh2CG571000 Rh2DG469800 Rh2DG610300 Rh3AG016800 Rh3AG249300 Rh3BG016900 Rh3BG017900 Rh3BG018000 Rh3CG016000 Rh3CG016900 Rh3CG017100 Rh3CG282700 Rh3DG017200 Rh3DG018200 Rh3DG018600 Rh3DG276000 Rh3DG278500 Rh4AG133800 Rh4AG332900 Rh4AG333100 Rh4AG334100 Rh4BG340600 Rh4BG340900 Rh4BG341800 Rh4CG355800 Rh4DG335900 Rh5CG351100 Rh5CG351300 Rh5CG351400 Rh5CG351700 Rh5CG351900 Rh5CG352200 Rh5CG421500 Rh6AG131900 Rh6AG265700 Rh6BG129100 Rh6CG124600 Rh6CG127100 Rh6CG267800 Rh6DG111300 Rh6DG114600 Rh7AG070800 Rh7AG251300 Rh7CG077200 Rh7CG077300 Rh7CG077500 Rh7CG268100 Rh7DG076900 Rh7DG077200 Rh7DG077300 Rh7DG077700 Rh7DG257700
rosa_wichuraiana Rw0G013150 Rw0G018000 Rw0G019300 Rw0G022850 Rw1G007090 Rw1G007130 Rw1G007160 Rw1G007210 Rw1G007770 Rw1G007850 Rw1G010720 Rw1G010780 Rw1G010860 Rw1G010890 Rw1G010900 Rw1G010950 Rw1G010960 Rw1G011020 Rw1G011060 Rw1G011100 Rw1G011420 Rw2G029200 Rw2G049010 Rw3G001260 Rw3G001370 Rw3G001400 Rw3G001430 Rw3G022340 Rw3G022510 Rw4G010890 Rw4G028850 Rw4G028930 Rw4G028950 Rw4G028970 Rw4G029040 Rw4G029060 Rw4G029080 Rw4G029100 Rw4G029110 Rw4G029120 Rw5G029450 Rw5G029480 Rw5G029570 Rw5G036350 Rw6G011290 Rw6G011310 Rw6G011530 Rw7G006420 Rw7G006430 Rw7G006460 Rw7G021320

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1968
Acc65I GGTACC 1 cut(s) 1163
AccB1I GGYRCC 1 cut(s) 1163
AccI GTMKAC 3 cut(s) 660, 1071, 1242
AciI CCGC 5 cut(s) 733, 928, 1092, 1096, 1506
AclI AACGTT 1 cut(s) 1499
AclWI GGATC 1 cut(s) 1270
AcoI YGGCCR 2 cut(s) 348, 1093
AcsI RAATTY 4 cut(s) 484, 959, 1329, 1665
AcuI CTGAAG 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 1965
AdeI CACNNNGTG 1 cut(s) 1340
AfaI GTAC 5 cut(s) 233, 739, 998, 1165, 1211
AfiI CCNNNNNNNGG 4 cut(s) 295, 762, 1102, 1173
AflII CTTAAG 1 cut(s) 535
AjnI CCWGG 2 cut(s) 258, 628
AjuI GAANNNNNNNTTGG 4 cut(s) 1320, 1352, 1656, 1688
Alw21I GWGCWC 2 cut(s) 115, 1237
Alw26I GTCTC 2 cut(s) 844, 1306
Alw44I GTGCAC 1 cut(s) 111
AlwI GGATC 1 cut(s) 1270
AoxI GGCC 3 cut(s) 348, 626, 1093
ApaLI GTGCAC 1 cut(s) 111
ApeKI GCWGC 5 cut(s) 5, 770, 1491, 1508, 1649
ApoI RAATTY 4 cut(s) 484, 959, 1329, 1665
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
Asp718I GGTACC 1 cut(s) 1163
AspS9I GGNCC 2 cut(s) 1295, 1949
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 4 cut(s) 197, 329, 643, 1172
AsuNHI GCTAGC 1 cut(s) 1462
AvaII GGWCC 2 cut(s) 1295, 1949
BaeGI GKGCMC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 1163
BanII GRGCYC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 948, 980
BauI CACGAG 1 cut(s) 1347
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 115, 1237
BbvI GCAGC 4 cut(s) 782, 1503, 1520, 1661
BccI CCATC 3 cut(s) 1603, 1960, 1994
BceAI ACGGC 2 cut(s) 335, 1078
BciT130I CCWGG 2 cut(s) 260, 630
BciVI GTATCC 2 cut(s) 496, 1520
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 844, 1306
BfaI CTAG 7 cut(s) 53, 677, 815, 1463, 1467, 1800, 1970
BfmI CTRYAG 2 cut(s) 6, 1588
BfrI CTTAAG 1 cut(s) 535
BfuI GTATCC 2 cut(s) 496, 1520
BglII AGATCT 1 cut(s) 604
BisI GCNGC 8 cut(s) 6, 771, 929, 1093, 1096, 1492, 1509, 1650
BlsI GCNGC 8 cut(s) 7, 772, 930, 1094, 1097, 1493, 1510, 1651
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 3 cut(s) 173, 260, 630
Bme18I GGWCC 2 cut(s) 1295, 1949
BmgT120I GGNCC 2 cut(s) 1295, 1949
BmiI GGNNCC 3 cut(s) 368, 1165, 1297
BmrFI CCNGG 3 cut(s) 173, 260, 630
BmsI GCATC 7 cut(s) 289, 1104, 1362, 1717, 1752, 1794, 1827
BmtI GCTAGC 1 cut(s) 1466
BpiI GAAGAC 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 1327
BpuMI CCSGG 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 750
BsaBI GATNNNNATC 2 cut(s) 96, 303
BsaHI GRCGYC 1 cut(s) 1965
BsaI GGTCTC 1 cut(s) 844
BsaJI CCNNGG 2 cut(s) 576, 1731
BsaXI ACNNNNNCTCC 2 cut(s) 989, 1019
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 762, 1102, 1173
Bse1I ACTGG 2 cut(s) 1141, 1904
Bse8I GATNNNNATC 2 cut(s) 96, 303
BseBI CCWGG 2 cut(s) 260, 630
BseCI ATCGAT 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 576, 1731
BseGI GGATG 8 cut(s) 97, 97, 132, 304, 663, 1379, 1785, 1918
BseJI GATNNNNATC 2 cut(s) 96, 303
BseLI CCNNNNNNNGG 4 cut(s) 295, 762, 1102, 1173
BseMII CTCAG 1 cut(s) 1530
BseNI ACTGG 2 cut(s) 1141, 1904
BseRI GAGGAG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 115
BseX3I CGGCCG 1 cut(s) 1093
BseXI GCAGC 4 cut(s) 782, 1503, 1520, 1661
BseYI CCCAGC 1 cut(s) 1117
Bsh1285I CGRYCG 1 cut(s) 1096
BshFI GGCC 3 cut(s) 350, 628, 1095
BshNI GGYRCC 1 cut(s) 1163
BshVI ATCGAT 1 cut(s) 750
BsiEI CGRYCG 1 cut(s) 1096
BsiHKAI GWGCWC 2 cut(s) 115, 1237
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 4 cut(s) 295, 762, 1102, 1173
BsmAI GTCTC 2 cut(s) 844, 1306
BsmBI CGTCTC 1 cut(s) 1306
BsmI GAATGC 2 cut(s) 1605, 1999
BsnI GGCC 3 cut(s) 350, 628, 1095
Bso31I GGTCTC 1 cut(s) 844
Bsp1286I GDGCHC 3 cut(s) 115, 371, 1237
Bsp143I GATC 4 cut(s) 94, 604, 801, 1262
BspACI CCGC 5 cut(s) 733, 928, 1092, 1096, 1506
BspANI GGCC 3 cut(s) 350, 628, 1095
BspCNI CTCAG 1 cut(s) 1531
BspDI ATCGAT 1 cut(s) 750
BspHI TCATGA 2 cut(s) 462, 792
BspLI GGNNCC 3 cut(s) 368, 1165, 1297
BspMAI CTGCAG 1 cut(s) 10
BspOI GCTAGC 1 cut(s) 1466
BspPI GGATC 1 cut(s) 1270
BspQI GCTCTTC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 1163
BspTI CTTAAG 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 844
BsrI ACTGG 2 cut(s) 1141, 1904
BssECI CCNNGG 2 cut(s) 576, 1731
BssMI GATC 4 cut(s) 94, 604, 801, 1262
BssNAI GTATAC 1 cut(s) 1243
BssNI GRCGYC 1 cut(s) 1965
BssSI CACGAG 1 cut(s) 1347
Bst1107I GTATAC 1 cut(s) 1243
Bst2BI CACGAG 1 cut(s) 1347
Bst2UI CCWGG 2 cut(s) 260, 630
Bst6I CTCTTC 2 cut(s) 7, 331
BstACI GRCGYC 1 cut(s) 1965
BstAFI CTTAAG 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 1390
BstC8I GCNNGC 3 cut(s) 1233, 1464, 1621
BstDEI CTNAG 3 cut(s) 87, 427, 1539
BstDSI CCRYGG 1 cut(s) 1731
BstEII GGTNACC 1 cut(s) 185
BstF5I GGATG 8 cut(s) 97, 97, 132, 304, 663, 1379, 1785, 1918
BstKTI GATC 4 cut(s) 97, 607, 804, 1265
BstMAI GTCTC 2 cut(s) 844, 1306
BstMBI GATC 4 cut(s) 94, 604, 801, 1262
BstMCI CGRYCG 1 cut(s) 1096
BstMWI GCNNNNNNNGC 2 cut(s) 1390, 1876
BstNI CCWGG 2 cut(s) 260, 630
BstNSI RCATGY 2 cut(s) 548, 1384
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 3 cut(s) 171, 258, 628
BstSFI CTRYAG 2 cut(s) 6, 1588
BstSLI GKGCMC 1 cut(s) 115
BstV1I GCAGC 4 cut(s) 782, 1503, 1520, 1661
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 604, 1262
BstYI RGATCY 2 cut(s) 604, 1262
BstZ17I GTATAC 1 cut(s) 1243
BstZI CGGCCG 1 cut(s) 1093
Bsu15I ATCGAT 1 cut(s) 750
BsuI GTATCC 2 cut(s) 496, 1520
BsuRI GGCC 3 cut(s) 350, 628, 1095
BsuTUI ATCGAT 1 cut(s) 750
BtgI CCRYGG 1 cut(s) 1731
BtsCI GGATG 8 cut(s) 97, 97, 132, 304, 663, 1379, 1785, 1918
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 3 cut(s) 76, 88, 1911
Cac8I GCNNGC 3 cut(s) 1233, 1464, 1621
CciI TCATGA 2 cut(s) 462, 792
CciNI GCGGCCGC 1 cut(s) 1093
Cfr13I GGNCC 2 cut(s) 1295, 1949
ClaI ATCGAT 1 cut(s) 750
Csp6I GTAC 5 cut(s) 232, 738, 997, 1164, 1210
CviQI GTAC 5 cut(s) 232, 738, 997, 1164, 1210
DdeI CTNAG 3 cut(s) 87, 427, 1539
DpnI GATC 4 cut(s) 96, 606, 803, 1264
DpnII GATC 4 cut(s) 94, 604, 801, 1262
DraI TTTAAA 1 cut(s) 570
DraIII CACNNNGTG 1 cut(s) 1340
EaeI YGGCCR 2 cut(s) 348, 1093
EagI CGGCCG 1 cut(s) 1093
Eam1104I CTCTTC 2 cut(s) 7, 331
EarI CTCTTC 2 cut(s) 7, 331
EciI GGCGGA 1 cut(s) 748
EclXI CGGCCG 1 cut(s) 1093
Eco24I GRGCYC 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 844
Eco32I GATATC 1 cut(s) 1402
Eco47I GGWCC 2 cut(s) 1295, 1949
Eco52I CGGCCG 1 cut(s) 1093
Eco57I CTGAAG 1 cut(s) 346
Eco91I GGTNACC 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 1295
EcoO65I GGTNACC 1 cut(s) 185
EcoRI GAATTC 2 cut(s) 484, 959
EcoRII CCWGG 2 cut(s) 258, 628
EcoRV GATATC 1 cut(s) 1402
EcoT38I GRGCYC 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 1306
FalI AAGNNNNNCTT 4 cut(s) 136, 168, 1068, 1100
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 3 cut(s) 660, 1071, 1242
Fnu4HI GCNGC 8 cut(s) 6, 771, 929, 1093, 1096, 1492, 1509, 1650
FokI GGATG 8 cut(s) 84, 104, 119, 311, 650, 1386, 1772, 1925
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 8 cut(s) 6, 771, 929, 1093, 1096, 1492, 1509, 1650
FspBI CTAG 7 cut(s) 53, 677, 815, 1463, 1467, 1800, 1970
GluI GCNGC 8 cut(s) 6, 771, 929, 1093, 1096, 1492, 1509, 1650
GsaI CCCAGC 1 cut(s) 1121
HaeIII GGCC 3 cut(s) 350, 628, 1095
HapII CCGG 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 1965
HincII GTYRAC 2 cut(s) 808, 1503
HindII GTYRAC 2 cut(s) 808, 1503
HindIII AAGCTT 1 cut(s) 1082
HinfI GANTC 7 cut(s) 129, 752, 1032, 1177, 1470, 1925, 1973
HpaII CCGG 1 cut(s) 173
HphI GGTGA 4 cut(s) 197, 329, 643, 1172
Hpy166II GTNNAC 7 cut(s) 113, 661, 808, 1072, 1189, 1243, 1503
Hpy188I TCNGA 9 cut(s) 158, 290, 580, 757, 1009, 1453, 1526, 1598, 1992
Hpy8I GTNNAC 7 cut(s) 113, 661, 808, 1072, 1189, 1243, 1503
HpyAV CCTTC 6 cut(s) 1046, 1167, 1286, 1686, 1697, 1838
HpyCH4IV ACGT 3 cut(s) 1191, 1499, 1965
HpyF10VI GCNNNNNNNGC 2 cut(s) 1390, 1876
HpyF3I CTNAG 3 cut(s) 87, 427, 1539
HpySE526I ACGT 3 cut(s) 1191, 1499, 1965
Hsp92I GRCGYC 1 cut(s) 1965
KpnI GGTACC 1 cut(s) 1167
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 604, 801, 1262
LguI GCTCTTC 1 cut(s) 331
LmnI GCTCC 3 cut(s) 366, 866, 1540
Lsp1109I GCAGC 4 cut(s) 782, 1503, 1520, 1661
LweI GCATC 7 cut(s) 289, 1104, 1362, 1717, 1752, 1794, 1827
MaeI CTAG 7 cut(s) 53, 677, 815, 1463, 1467, 1800, 1970
MaeII ACGT 3 cut(s) 1191, 1499, 1965
MaeIII GTNAC 7 cut(s) 185, 317, 971, 1058, 1376, 1802, 1974
MalI GATC 4 cut(s) 96, 606, 803, 1264
MboI GATC 4 cut(s) 94, 604, 801, 1262
MflI RGATCY 2 cut(s) 604, 1262
MhlI GDGCHC 3 cut(s) 115, 371, 1237
MlyI GAGTC 2 cut(s) 1464, 1982
MmeI TCCRAC 3 cut(s) 181, 780, 1032
MseI TTAA 7 cut(s) 536, 555, 569, 908, 1110, 1496, 1985
MslI CAYNNNNRTG 1 cut(s) 570
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 3 cut(s) 173, 260, 630
Mva1269I GAATGC 2 cut(s) 1605, 1999
MvaI CCWGG 2 cut(s) 260, 630
MwoI GCNNNNNNNGC 2 cut(s) 1390, 1876
NciI CCSGG 1 cut(s) 173
NdeII GATC 4 cut(s) 94, 604, 801, 1262
NheI GCTAGC 1 cut(s) 1462
NlaIV GGNNCC 3 cut(s) 368, 1165, 1297
NmuCI GTSAC 6 cut(s) 185, 317, 971, 1376, 1802, 1974
NotI GCGGCCGC 1 cut(s) 1093
NspI RCATGY 2 cut(s) 548, 1384
PagI TCATGA 2 cut(s) 462, 792
PciSI GCTCTTC 1 cut(s) 331
PctI GAATGC 2 cut(s) 1605, 1999
PfeI GAWTC 5 cut(s) 129, 752, 1032, 1177, 1925
PflFI GACNNNGTC 1 cut(s) 1473
PkrI GCNGC 8 cut(s) 7, 772, 930, 1094, 1097, 1493, 1510, 1651
PleI GAGTC 2 cut(s) 1464, 1981
PpsI GAGTC 2 cut(s) 1464, 1981
PpuMI RGGWCCY 1 cut(s) 1295
Psp1406I AACGTT 1 cut(s) 1499
Psp5II RGGWCCY 1 cut(s) 1295
Psp6I CCWGG 2 cut(s) 258, 628
PspEI GGTNACC 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 1117
PspGI CCWGG 2 cut(s) 258, 628
PspN4I GGNNCC 3 cut(s) 368, 1165, 1297
PspPI GGNCC 2 cut(s) 1295, 1949
PspPPI RGGWCCY 1 cut(s) 1295
PsrI GAACNNNNNNTAC 2 cut(s) 870, 902
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 604, 1262
PsyI GACNNNGTC 1 cut(s) 1473
RsaI GTAC 5 cut(s) 233, 739, 998, 1165, 1211
RsaNI GTAC 5 cut(s) 232, 738, 997, 1164, 1210
RseI CAYNNNNRTG 1 cut(s) 570
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 7 cut(s) 536, 555, 569, 908, 1110, 1496, 1985
SatI GCNGC 8 cut(s) 6, 771, 929, 1093, 1096, 1492, 1509, 1650
Sau3AI GATC 4 cut(s) 94, 604, 801, 1262
Sau96I GGNCC 2 cut(s) 1295, 1949
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 2 cut(s) 1464, 1982
ScrFI CCNGG 3 cut(s) 173, 260, 630
SduI GDGCHC 3 cut(s) 115, 371, 1237
SfaNI GCATC 7 cut(s) 289, 1104, 1362, 1717, 1752, 1794, 1827
SfcI CTRYAG 2 cut(s) 6, 1588
SinI GGWCC 2 cut(s) 1295, 1949
SmiI ATTTAAAT 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 2 cut(s) 535, 1306
SmoI CTYRAG 2 cut(s) 535, 1306
SsiI CCGC 5 cut(s) 733, 928, 1092, 1096, 1506
SspI AATATT 2 cut(s) 459, 1558
SspMI CTAG 7 cut(s) 53, 677, 815, 1463, 1467, 1800, 1970
StyD4I CCNGG 3 cut(s) 171, 258, 628
SwaI ATTTAAAT 1 cut(s) 570
TaiI ACGT 3 cut(s) 1194, 1502, 1968
TaqI TCGA 8 cut(s) 220, 420, 446, 750, 1218, 1269, 1425, 1817
TaqII GACCGA 1 cut(s) 826
TatI WGTACW 2 cut(s) 231, 737
TauI GCSGC 3 cut(s) 931, 1095, 1098
TfiI GAWTC 5 cut(s) 129, 752, 1032, 1177, 1925
Tru1I TTAA 7 cut(s) 536, 555, 569, 908, 1110, 1496, 1985
Tru9I TTAA 7 cut(s) 536, 555, 569, 908, 1110, 1496, 1985
TscAI CASTG 3 cut(s) 76, 88, 1911
TseFI GTSAC 6 cut(s) 185, 317, 971, 1376, 1802, 1974
TseI GCWGC 5 cut(s) 5, 770, 1491, 1508, 1649
Tsp45I GTSAC 6 cut(s) 185, 317, 971, 1376, 1802, 1974
TspGWI ACGGA 2 cut(s) 879, 1748
TspRI CASTG 3 cut(s) 76, 88, 1911
Tth111I GACNNNGTC 1 cut(s) 1473
Vha464I CTTAAG 1 cut(s) 535
VneI GTGCAC 1 cut(s) 111
VpaK11BI GGWCC 2 cut(s) 1295, 1949
XapI RAATTY 4 cut(s) 484, 959, 1329, 1665
XceI RCATGY 2 cut(s) 548, 1384
XmiI GTMKAC 3 cut(s) 660, 1071, 1242
XspI CTAG 7 cut(s) 53, 677, 815, 1463, 1467, 1800, 1970
ZraI GACGTC 1 cut(s) 1966
ZrmI AGTACT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.