MD16G1038700.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
2747803 .. 2750044
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1038700.v1.1.491

Sequence Viewer

Length: 1761 bp
ATGGCTCCGGTGGCTTTGTTTATTCTCGCCATTCTTGCTCACCTTGTGGTTCTGCACTCTGCTGAAGCCATACATTGTCCAGTCCAGTTCTGCAGCTCAGCAGGCAACATCAGCTTCCCCTTCAAAAGCATGGGATATCCTCCTGAATGCGGATTGTTCACAGTTGATTGTTCAGAACCCGATCGGCCAAAAATCCAATTGGAAGAGGGAGGATACTGGCATGAATTTGGAGGCTCTTTATTATCAACTTCGATTTGGATCGAAGATAGAGACCTTGCCGACCGCTTAGAAAAGGATCGCTGCAACGACGGACTTTTCGACGACTTGAGTCTTCCCAGGGCTTCTCCAATCCCTGAAGTATCATTATCCACACCCAATCTTACCCTTTTCAAATGCAACACCACCTTAGACAAAAATTCTTATCCACAACTTATTTATGGCTGCGGAAATGCTAACCATACTTATTATATCAATTCATCTAACGGTAATTTACCTAACCCTCTGCCACCAAGGTGTCAAACCATTCAGGTCCCCATGCGTCCGTCTCAACCGACCATGTCCTCTTCATTGACAGCTGAGTTTTATCTCCAGGTGTCAGCACAAGAATGTTTTCAATGCATTGAAAGCAAAGGTGAATGCCTGGAGATAAGCAGTTTGAAATTGAAGCTAGGACTAGTTGGTGCAGCTTCTGTTATCGTCGTTCTAGTTGTTGTCTGCTGTTTCTTTTGGAAGAAGCGTATCCAAAAACATCAAATTGTTGAGGCCTTTCTAAGGAGCTATGGGCCGCTTCAAGTTCAAAGGCATAGCTATTCGGAGGTCAAGAAAATGACCAACTCCTTCAAAGAAAAATTAGGACAAGGAGGCTATGGTGCTGTTTATAAAGGAAAGTTAAAGGACGGCCGTCTTGTAGCAGTGAAGGTCTTGACCAAACTTAAAGGAGATGGAGAAGAATTTATGAATGAAGTGGCAGCCATTAGTCGAACTTCCCATGTCAACATCGTCTCCTTGTTGGGCTACTGTTTTGAGCATTCTAAGAGGGCTCTGATCTATGAATTCATGCCTAATGGATCGCTCGAGAAGTTCATATTTAATGCAAGTACTCCCAAGAATGATCATCATCACTTGGGATGGGAACCTCTATATCAAATTTCACTCGGTATTGCTCAAGGATTGGAGTACTTACATCGTGGTTGCAACACACGAATTTTGCATTTCGACATCAAGCCTCATAACATTCTTCTTGACGAAAACTTCAGCCCAAAAATCTCAGATTTTGGCCTTGCCAAAATATGCAACAGGAAAGAGAGTATTGTGTCGATGTTGGGAGCTAGAGGTACAGCAGGTTACATTGCTCCAGAAGTATTTTGTAGAAACTTTGGAGGGGTCTCACACAAGTCTGATGTGTACAGCTACGGAATGATGCTTTCGGAAATCGTTGGTGGAAGAAGGAACATCGACGTTGAAGCTGAAAATACAAGTGAAATATATTTTCCGCATTGGATTTACAAGCGCCTTGAATTGGATGAAGAGCTTGGTGTGCAGAATGTTATGAACGAGGAAGACAAAGTAAGAGCAAGGAAGATGATCATAGTGAGCTTGTGGTGCATCCAAACTGATCCTTCAAACCGGCCAGCGATGAGGGAAGTGATAGATATGTTGGAAGGGAGTGTTGACTCGTTGCAGATACCACCCAAGCCTTACTTGTCTTCTCCTCCAAAATCCCCGTTAGATTCTTCTACTACATTGATATCAATACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

587

Amino Acids

65.51

Weight (kDa)

6.51

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 280 - 551 2.3e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 280 - 552 1e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66910 AT1G66910 AT1G66920 AT1G66920 AT1G66920 AT1G66930 AT1G66930 AT1G66930 AT1G67000 AT1G70250 AT4G18250 AT5G38240 AT5G38240 AT5G38240 AT5G38250 AT5G38260 AT5G38280 AT5G38280
fragaria_vesca FvH4_1g03330 FvH4_4g26890 FvH4_4g26891 FvH4_4g26892 FvH4_4g26892 FvH4_4g26892 FvH4_4g26893 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26950 FvH4_4g26961 FvH4_4g26961 FvH4_4g34450 FvH4_4g34450 FvH4_4g34450 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g22251 FvH4_6g01490 FvH4_6g01490 FvH4_6g01490 FvH4_6g01502 FvH4_6g23830 FvH4_6g28430 FvH4_6g28450 FvH4_6g47250 FvH4_6g52670 FvH4_7g04150 FvH4_7g04150 FvH4_7g04160 FvH4_7g04170 FvH4_7g05990 FvH4_7g06001 FvH4_7g06010 FvH4_7g06010 FvH4_7g06060 FvH4_7g20630 FvH4_7g20630
malus_domestica MD01G1059700.v1.1 MD02G1233600.v1.1 MD02G1234400.v1.1 MD02G1234900.v1.1 MD02G1235600.v1.1 MD02G1245700.v1.1 MD02G1245800.v1.1 MD02G1246200.v1.1 MD02G1246300.v1.1 MD02G1246700.v1.1 MD02G1246800.v1.1 MD02G1247100.v1.1 MD02G1247300.v1.1 MD02G1247400.v1.1 MD02G1249300.v1.1 MD02G1249500.v1.1 MD02G1249700.v1.1 MD02G1250000.v1.1 MD02G1250200.v1.1 MD02G1250800.v1.1 MD02G1251800.v1.1 MD02G1252600.v1.1 MD02G1253600.v1.1 MD02G1273500.v1.1 MD02G1274000.v1.1 MD02G1274500.v1.1 MD04G1233100.v1.1 MD06G1136000.v1.1 MD06G1136200.v1.1 MD06G1136300.v1.1 MD06G1218300.v1.1 MD06G1218500.v1.1 MD06G1218600.v1.1 MD06G1219100.v1.1 MD07G1070000.v1.1 MD07G1070400.v1.1 MD07G1070700.v1.1 MD07G1071000.v1.1 MD07G1071100.v1.1 MD07G1137900.v1.1 MD07G1138000.v1.1 MD09G1255100.v1.1 MD12G1250700.v1.1 MD12G1251100.v1.1 MD12G1251500.v1.1 MD13G1036700.v1.1 MD13G1037900.v1.1 MD13G1038000.v1.1 MD16G1037900.v1.1 MD16G1038000.v1.1 MD16G1038600.v1.1 MD16G1038700.v1.1 MD16G1039200.v1.1 MD16G1039300.v1.1 MD16G1039500.v1.1
prunus_persica Prupe.1G315000_v2.0.a1 Prupe.1G315000_v2.0.a1 Prupe.1G315100_v2.0.a1 Prupe.1G315300_v2.0.a1 Prupe.1G315400_v2.0.a1 Prupe.1G496900_v2.0.a1 Prupe.2G033400_v2.0.a1 Prupe.2G047500_v2.0.a1 Prupe.2G048700_v2.0.a1 Prupe.2G067100_v2.0.a1 Prupe.2G087100_v2.0.a1 Prupe.2G087500_v2.0.a1 Prupe.2G087800_v2.0.a1 Prupe.2G088100_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088800_v2.0.a1 Prupe.2G092500_v2.0.a1 Prupe.2G092800_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093100_v2.0.a1 Prupe.2G093200_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093400_v2.0.a1 Prupe.2G093500_v2.0.a1 Prupe.2G093600_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G103300_v2.0.a1 Prupe.2G103900_v2.0.a1 Prupe.2G312200_v2.0.a1 Prupe.3G145200_v2.0.a1 Prupe.3G145600_v2.0.a1 Prupe.3G145700_v2.0.a1 Prupe.3G145800_v2.0.a1 Prupe.3G145900_v2.0.a1 Prupe.3G146000_v2.0.a1 Prupe.3G146100_v2.0.a1 Prupe.3G146200_v2.0.a1 Prupe.3G146600_v2.0.a1 Prupe.5G223800_v2.0.a1 Prupe.6G137800_v2.0.a1 Prupe.6G138000_v2.0.a1 Prupe.6G141600_v2.0.a1 Prupe.6G141900_v2.0.a1 Prupe.6G142000_v2.0.a1 Prupe.6G142100_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G352800_v2.0.a1 Prupe.6G352800_v2.0.a1
pyrus_communis pycom01g08840 pycom01g08860 pycom01g08920 pycom01g08960 pycom01g08990 pycom01g09000 pycom02g20230 pycom02g21120 pycom02g21140 pycom02g21350 pycom02g21360 pycom02g21400 pycom02g21510 pycom02g23440 pycom02g23450 pycom02g23480 pycom02g23490 pycom04g20650 pycom04g20690 pycom04g20710 pycom04g20730 pycom06g12760 pycom06g19500 pycom06g19510 pycom06g19530 pycom06g19540 pycom06g19570 pycom12g23070 pycom12g23080 pycom12g23100 pycom13g03140 pycom13g03250 pycom13g03290 pycom13g03300 pycom14g19010 pycom16g03300 pycom16g03320 pycom16g03370 pycom16g03380 pycom16g03400 pycom17g24970 pycom17g25020 pycom17g25150 pycom17g25180 pycom17g25240 pycom17g25250
rosa_chinensis RchiOBHm_Chr1g0325081 RchiOBHm_Chr1g0325091 RchiOBHm_Chr1g0325111 RchiOBHm_Chr1g0325131 RchiOBHm_Chr1g0328221 RchiOBHm_Chr1g0328241 RchiOBHm_Chr1g0328281 RchiOBHm_Chr1g0328331 RchiOBHm_Chr1g0328371 RchiOBHm_Chr1g0328401 RchiOBHm_Chr1g0328481 RchiOBHm_Chr1g0328501 RchiOBHm_Chr1g0328591 RchiOBHm_Chr1g0328601 RchiOBHm_Chr1g0328751 RchiOBHm_Chr1g0329621 RchiOBHm_Chr1g0329631 RchiOBHm_Chr1g0333261 RchiOBHm_Chr1g0333291 RchiOBHm_Chr1g0333331 RchiOBHm_Chr1g0333351 RchiOBHm_Chr1g0333441 RchiOBHm_Chr1g0333481 RchiOBHm_Chr1g0333571 RchiOBHm_Chr1g0333611 RchiOBHm_Chr1g0334191 RchiOBHm_Chr1g0334281 RchiOBHm_Chr1g0334791 RchiOBHm_Chr1g0334801 RchiOBHm_Chr1g0334831 RchiOBHm_Chr1g0334841 RchiOBHm_Chr1g0384001 RchiOBHm_Chr2g0138701 RchiOBHm_Chr2g0166291 RchiOBHm_Chr2g0166311 RchiOBHm_Chr2g0166321 RchiOBHm_Chr3g0449131 RchiOBHm_Chr3g0449161 RchiOBHm_Chr3g0449331 RchiOBHm_Chr3g0449361 RchiOBHm_Chr3g0449381 RchiOBHm_Chr3g0482511 RchiOBHm_Chr3g0482521 RchiOBHm_Chr3g0482701 RchiOBHm_Chr4g0405811 RchiOBHm_Chr4g0434521 RchiOBHm_Chr4g0434661 RchiOBHm_Chr4g0434681 RchiOBHm_Chr4g0434701 RchiOBHm_Chr4g0434711 RchiOBHm_Chr5g0047441 RchiOBHm_Chr5g0047581 RchiOBHm_Chr5g0047621 RchiOBHm_Chr5g0047671 RchiOBHm_Chr5g0047761 RchiOBHm_Chr5g0047851 RchiOBHm_Chr5g0047981 RchiOBHm_Chr5g0048071 RchiOBHm_Chr5g0059221 RchiOBHm_Chr5g0059231 RchiOBHm_Chr5g0078441 RchiOBHm_Chr6g0264171 RchiOBHm_Chr6g0264401 RchiOBHm_Chr6g0264411 RchiOBHm_Chr6g0273031 RchiOBHm_Chr6g0283331 RchiOBHm_Chr7g0185621 RchiOBHm_Chr7g0185831 RchiOBHm_Chr7g0185841 RchiOBHm_Chr7g0185851 RchiOBHm_Chr7g0185861 RchiOBHm_Chr7g0185871 RchiOBHm_Chr7g0185881 RchiOBHm_Chr7g0185901 RchiOBHm_Chr7g0185911 RchiOBHm_Chr7g0185931 RchiOBHm_Chr7g0185951 RchiOBHm_Chr7g0185991 RchiOBHm_Chr7g0186011 RchiOBHm_Chr7g0201241 RchiOBHm_Chr7g0209921
rosa_laevigata RLG00000004874 RLG00000004876 RLG00000004878 RLG00000004879 RLG00000004880 RLG00000004881 RLG00000006656 RLG00000006657 RLG00000006659 RLG00000006666 RLG00000008822 RLG00000008823 RLG00000014282 RLG00000019268 RLG00000020174 RLG00000021604 RLG00000021605 RLG00000021606 RLG00000023348 RLG00000024362 RLG00000025836 RLG00000025838 RLG00000025848 RLG00000025849 RLG00000025850 RLG00000029421 RLG00000029464 RLG00000029467 RLG00000029469 RLG00000029470 RLG00000029471 RLG00000029547 RLG00000029552 RLG00000029603 RLG00000029604 RLG00000029612 RLG00000029613 RLG00000029617 RLG00000029920 RLG00000029923 RLG00000029924 RLG00000029927 RLG00000029930 RLG00000029933 RLG00000029941 RLG00000030158 RLG00000030159 RLG00000034494 RLG00000035280 RLG00000035281
rosa_multiflora Rmu_co8033562.1_g000001 Rmu_co8168632.1_g000001 Rmu_co8248815.1_g000001 Rmu_co8346553.1_g000001 Rmu_co8352941.1_g000001 Rmu_co8372625.1_g000001 Rmu_co8486819.1_g000001 Rmu_sc0000148.1_g000013 Rmu_sc0000148.1_g000033 Rmu_sc0000148.1_g000045 Rmu_sc0000148.1_g000075 Rmu_sc0000194.1_g000011 Rmu_sc0000194.1_g000015 Rmu_sc0000194.1_g000018 Rmu_sc0000215.1_g000021 Rmu_sc0000494.1_g000001 Rmu_sc0000494.1_g000016 Rmu_sc0000574.1_g000038 Rmu_sc0000574.1_g000040 Rmu_sc0000580.1_g000027 Rmu_sc0000580.1_g000029 Rmu_sc0000725.1_g000001 Rmu_sc0000725.1_g000002 Rmu_sc0000725.1_g000005 Rmu_sc0000725.1_g000019 Rmu_sc0000895.1_g000001 Rmu_sc0000982.1_g000004 Rmu_sc0000982.1_g000034 Rmu_sc0000982.1_g000035 Rmu_sc0000982.1_g000087 Rmu_sc0000982.1_g000107 Rmu_sc0001009.1_g000033 Rmu_sc0001009.1_g000036 Rmu_sc0001129.1_g000001 Rmu_sc0001200.1_g000018 Rmu_sc0001234.1_g000006 Rmu_sc0001349.1_g000008 Rmu_sc0001563.1_g000027 Rmu_sc0001563.1_g000028 Rmu_sc0001563.1_g000038 Rmu_sc0001563.1_g000046 Rmu_sc0001654.1_g000006 Rmu_sc0001654.1_g000007 Rmu_sc0001829.1_g000005 Rmu_sc0002107.1_g000004 Rmu_sc0002107.1_g000007 Rmu_sc0002107.1_g000008 Rmu_sc0002548.1_g000036 Rmu_sc0002955.1_g000013 Rmu_sc0002955.1_g000029 Rmu_sc0002965.1_g000002 Rmu_sc0002965.1_g000003 Rmu_sc0002965.1_g000017 Rmu_sc0002965.1_g000027 Rmu_sc0002965.1_g000028 Rmu_sc0002969.1_g000010 Rmu_sc0002983.1_g000033 Rmu_sc0003166.1_g000001 Rmu_sc0003441.1_g000001 Rmu_sc0003441.1_g000010 Rmu_sc0003441.1_g000011 Rmu_sc0003776.1_g000034 Rmu_sc0003776.1_g000035 Rmu_sc0004178.1_g000005 Rmu_sc0004241.1_g000010 Rmu_sc0004356.1_g000003 Rmu_sc0004470.1_g000014 Rmu_sc0004470.1_g000018 Rmu_sc0004538.1_g000009 Rmu_sc0004646.1_g000041 Rmu_sc0004736.1_g000001 Rmu_sc0004736.1_g000016 Rmu_sc0004736.1_g000020 Rmu_sc0004753.1_g000001 Rmu_sc0004753.1_g000012 Rmu_sc0004805.1_g000025 Rmu_sc0004874.1_g000010 Rmu_sc0005613.1_g000002 Rmu_sc0005665.1_g000006 Rmu_sc0005665.1_g000022 Rmu_sc0005665.1_g000024 Rmu_sc0005665.1_g000030 Rmu_sc0005665.1_g000032 Rmu_sc0005665.1_g000034 Rmu_sc0005665.1_g000036 Rmu_sc0005665.1_g000037 Rmu_sc0005665.1_g000039 Rmu_sc0005783.1_g000007 Rmu_sc0005899.1_g000014 Rmu_sc0006031.1_g000005 Rmu_sc0006031.1_g000008 Rmu_sc0006661.1_g000006 Rmu_sc0006959.1_g000006 Rmu_sc0006959.1_g000008 Rmu_sc0006959.1_g000013 Rmu_sc0007214.1_g000004 Rmu_sc0007477.1_g000006 Rmu_sc0007681.1_g000001 Rmu_sc0007681.1_g000005 Rmu_sc0008439.1_g000002 Rmu_sc0008439.1_g000006 Rmu_sc0009205.1_g000009 Rmu_sc0009205.1_g000024 Rmu_sc0009869.1_g000001 Rmu_sc0009881.1_g000003 Rmu_sc0013038.1_g000007 Rmu_sc0013038.1_g000010 Rmu_sc0016170.1_g000010 Rmu_sc0016170.1_g000016 Rmu_sc0016751.1_g000005 Rmu_sc0017361.1_g000001 Rmu_sc0021068.1_g000001 Rmu_sc0021282.1_g000001 Rmu_sc0024214.1_g000002 Rmu_sc0025695.1_g000001 Rmu_sc0028145.1_g000002 Rmu_sc0036877.1_g000001 Rmu_sc0038968.1_g000001 Rmu_ssc0000047.1_g000006 Rmu_ssc0000047.1_g000007 Rmu_ssc0000388.1_g000041
rosa_roxburghii Rroxscaffold_176G00431510 Rroxscaffold_176G00431520 Rroxscaffold_1G00021210 Rroxscaffold_1G00033850 Rroxscaffold_1G00033940 Rroxscaffold_2G00085010 Rroxscaffold_3G00227760 Rroxscaffold_3G00248800 Rroxscaffold_3G00268520 Rroxscaffold_3G00268550 Rroxscaffold_3G00268590 Rroxscaffold_3G00268600 Rroxscaffold_4G00316560 Rroxscaffold_4G00316920 Rroxscaffold_4G00316930 Rroxscaffold_4G00317380 Rroxscaffold_4G00317420 Rroxscaffold_4G00317550 Rroxscaffold_4G00317560 Rroxscaffold_4G00317640 Rroxscaffold_4G00317660 Rroxscaffold_4G00320870 Rroxscaffold_4G00320880 Rroxscaffold_4G00321480 Rroxscaffold_4G00321690 Rroxscaffold_4G00321890 Rroxscaffold_5G00350290 Rroxscaffold_5G00375840 Rroxscaffold_5G00375890 Rroxscaffold_5G00375910 Rroxscaffold_5G00375920 Rroxscaffold_6G00398920 Rroxscaffold_6G00399010 Rroxscaffold_6G00399320 Rroxscaffold_6G00415790 Rroxscaffold_6G00427220 Rroxscaffold_6G00427340 Rroxscaffold_7G00203530
rosa_rugosa Rorug01G0049600 Rorug01G0073600.1 Rorug01G0074600 Rorug01G0074900 Rorug01G0075000 Rorug01G0075100 Rorug01G0075400 Rorug01G0081300 Rorug01G0081400 Rorug01G0103400 Rorug01G0103500 Rorug01G0108300 Rorug01G0108400 Rorug01G0108600 Rorug01G0108700 Rorug01G0109300 Rorug01G0110000 Rorug01G0110600 Rorug01G0111900 Rorug01G0116400 Rorug01G0116500 Rorug01G0116900 Rorug01G0117000 Rorug02G0305700 Rorug02G0305900 Rorug02G0521800 Rorug02G0521900 Rorug02G0522000 Rorug02G0522000 Rorug02G0522100 Rorug02G0618100 Rorug02G0618200 Rorug02G0618500 Rorug02G0619900 Rorug02G0620000 Rorug02G0620100 Rorug02G0620200 Rorug03G0100200 Rorug03G0197900 Rorug04G0062400 Rorug04G0277100 Rorug04G0277500 Rorug04G0277500 Rorug04G0277600 Rorug04G0277600 Rorug04G0277700 Rorug05G0156000.1 Rorug05G0236300 Rorug05G0236300 Rorug05G0236300 Rorug05G0236500 Rorug05G0236600 Rorug06G0008000 Rorug06G0008100 Rorug06G0008400 Rorug06G0008500 Rorug06G0008600 Rorug06G0008700 Rorug06G0009400 Rorug06G0009500 Rorug06G0009600 Rorug06G0030300 Rorug06G0087000 Rorug06G0099800 Rorug06G0471600 Rorug06G0471600 Rorug06G0471700 Rorug07G0117400
rosa_samantha Rh1AG090600 Rh1AG092700 Rh1AG093100 Rh1AG093800 Rh1AG131300 Rh1AG131600 Rh1AG132000 Rh1AG133000 Rh1AG140900 Rh1AG165100 Rh1BG072500 Rh1BG074100 Rh1BG074300 Rh1BG074800 Rh1BG074900 Rh1BG100800 Rh1BG101000 Rh1BG101400 Rh1BG108200 Rh1CG095600 Rh1CG125200 Rh1CG125500 Rh1CG125800 Rh1CG132800 Rh1DG095200 Rh1DG095600 Rh1DG095700 Rh1DG096400 Rh1DG096900 Rh1DG097000 Rh1DG136700 Rh1DG137000 Rh1DG137200 Rh1DG137900 Rh1DG138200 Rh1DG138400 Rh1DG138800 Rh1DG139200 Rh1DG142400 Rh1DG145000 Rh2AG588100 Rh2BG460400 Rh2BG600100 Rh2CG571000 Rh2DG469800 Rh2DG610300 Rh3AG016800 Rh3AG249300 Rh3BG016900 Rh3BG017900 Rh3BG018000 Rh3CG016000 Rh3CG016900 Rh3CG017100 Rh3CG282700 Rh3DG017200 Rh3DG018200 Rh3DG018600 Rh3DG276000 Rh3DG278500 Rh4AG133800 Rh4AG332900 Rh4AG333100 Rh4AG334100 Rh4BG340600 Rh4BG340900 Rh4BG341800 Rh4CG355800 Rh4DG335900 Rh5CG351100 Rh5CG351300 Rh5CG351400 Rh5CG351700 Rh5CG351900 Rh5CG352200 Rh5CG421500 Rh6AG131900 Rh6AG265700 Rh6BG129100 Rh6CG124600 Rh6CG127100 Rh6CG267800 Rh6DG111300 Rh6DG114600 Rh7AG070800 Rh7AG251300 Rh7CG077200 Rh7CG077300 Rh7CG077500 Rh7CG268100 Rh7DG076900 Rh7DG077200 Rh7DG077300 Rh7DG077700 Rh7DG257700
rosa_wichuraiana Rw0G013150 Rw0G018000 Rw0G019300 Rw0G022850 Rw1G007090 Rw1G007130 Rw1G007160 Rw1G007210 Rw1G007770 Rw1G007850 Rw1G010720 Rw1G010780 Rw1G010860 Rw1G010890 Rw1G010900 Rw1G010950 Rw1G010960 Rw1G011020 Rw1G011060 Rw1G011100 Rw1G011420 Rw2G029200 Rw2G049010 Rw3G001260 Rw3G001370 Rw3G001400 Rw3G001430 Rw3G022340 Rw3G022510 Rw4G010890 Rw4G028850 Rw4G028930 Rw4G028950 Rw4G028970 Rw4G029040 Rw4G029060 Rw4G029080 Rw4G029100 Rw4G029110 Rw4G029120 Rw5G029450 Rw5G029480 Rw5G029570 Rw5G036350 Rw6G011290 Rw6G011310 Rw6G011530 Rw7G006420 Rw7G006430 Rw7G006460 Rw7G021320

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
Acc36I ACCTGC 1 cut(s) 1331
AciI CCGC 5 cut(s) 150, 283, 444, 785, 1493
AclWI GGATC 4 cut(s) 266, 303, 1075, 1610
AcoI YGGCCR 3 cut(s) 185, 898, 1628
AcsI RAATTY 6 cut(s) 224, 415, 950, 1052, 1146, 1203
AcuI CTGAAG 3 cut(s) 84, 375, 1237
AdeI CACNNNGTG 1 cut(s) 46
AfaI GTAC 4 cut(s) 1099, 1178, 1336, 1406
AfiI CCNNNNNNNGG 3 cut(s) 149, 771, 1519
AhlI ACTAGT 1 cut(s) 673
AjnI CCWGG 3 cut(s) 335, 588, 639
AleI CACNNNNGTG 1 cut(s) 511
Alw26I GTCTC 4 cut(s) 264, 549, 1006, 1390
AlwI GGATC 4 cut(s) 266, 303, 1075, 1610
AlwNI CAGNNNCTG 1 cut(s) 689
Ama87I CYCGRG 1 cut(s) 1073
AoxI GGCC 6 cut(s) 185, 762, 782, 898, 1276, 1628
ApeKI GCWGC 5 cut(s) 93, 300, 441, 683, 968
ApoI RAATTY 6 cut(s) 224, 415, 950, 1052, 1146, 1203
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 1 cut(s) 1512
AspS9I GGNCC 2 cut(s) 529, 782
AsuHPI GGTGA 2 cut(s) 32, 644
AvaI CYCGRG 1 cut(s) 1073
AvaII GGWCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 1042
BbsI GAAGAC 3 cut(s) 323, 1566, 1698
BbvI GCAGC 5 cut(s) 105, 287, 428, 695, 980
BccI CCATC 2 cut(s) 935, 1122
BceAI ACGGC 2 cut(s) 885, 913
BciT130I CCWGG 3 cut(s) 337, 590, 641
BciVI GTATCC 2 cut(s) 206, 749
BclI TGATCA 2 cut(s) 1111, 1584
BcoDI GTCTC 4 cut(s) 264, 549, 1006, 1390
BcuI ACTAGT 1 cut(s) 673
BfaI CTAG 4 cut(s) 668, 674, 704, 1329
BfmI CTRYAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 1513
BfuAI ACCTGC 1 cut(s) 1331
BfuI GTATCC 2 cut(s) 206, 749
BisI GCNGC 6 cut(s) 94, 301, 442, 684, 785, 969
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 6 cut(s) 95, 302, 443, 685, 786, 970
BmcAI AGTACT 2 cut(s) 1099, 1178
Bme1390I CCNGG 3 cut(s) 337, 590, 641
Bme18I GGWCC 1 cut(s) 529
BmeT110I CYCGRG 1 cut(s) 1073
BmgT120I GGNCC 2 cut(s) 529, 782
BmiI GGNNCC 3 cut(s) 6, 531, 1134
BmrFI CCNGG 3 cut(s) 337, 590, 641
BmsI GCATC 2 cut(s) 1410, 1614
BoxI GACNNNNGTC 2 cut(s) 327, 900
BpiI GAAGAC 3 cut(s) 323, 1566, 1698
BpmI CTGGAG 3 cut(s) 572, 662, 1338
Bpu1102I GCTNAGC 1 cut(s) 97
BpuEI CTTGAG 2 cut(s) 346, 1149
BsaBI GATNNNNATC 2 cut(s) 257, 1116
BsaI GGTCTC 2 cut(s) 264, 1390
BsaJI CCNNGG 3 cut(s) 335, 336, 509
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 986, 1016
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 771, 1519
Bse118I RCCGGY 1 cut(s) 1626
Bse1I ACTGG 3 cut(s) 80, 85, 221
Bse3DI GCAATG 1 cut(s) 1347
Bse8I GATNNNNATC 2 cut(s) 257, 1116
BseBI CCWGG 3 cut(s) 337, 590, 641
BseDI CCNNGG 3 cut(s) 335, 336, 509
BseGI GGATG 3 cut(s) 1133, 1528, 1605
BseJI GATNNNNATC 2 cut(s) 257, 1116
BseLI CCNNNNNNNGG 3 cut(s) 149, 771, 1519
BseMI GCAATG 1 cut(s) 1347
BseMII CTCAG 3 cut(s) 111, 567, 1281
BseNI ACTGG 3 cut(s) 80, 85, 221
BseRI GAGGAG 1 cut(s) 1701
BseX3I CGGCCG 1 cut(s) 898
BseXI GCAGC 5 cut(s) 105, 287, 428, 695, 980
BsgI GTGCAG 3 cut(s) 38, 702, 1559
Bsh1285I CGRYCG 3 cut(s) 184, 283, 901
BshFI GGCC 6 cut(s) 187, 764, 784, 900, 1278, 1630
BsiEI CGRYCG 3 cut(s) 184, 283, 901
BsiHKCI CYCGRG 1 cut(s) 1073
BsiSI CCGG 2 cut(s) 8, 1627
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 3 cut(s) 149, 771, 1519
BsmAI GTCTC 4 cut(s) 264, 549, 1006, 1390
BsmBI CGTCTC 2 cut(s) 549, 1006
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 3 cut(s) 152, 641, 1027
BsnI GGCC 6 cut(s) 187, 764, 784, 900, 1278, 1630
Bso31I GGTCTC 2 cut(s) 264, 1390
BsoBI CYCGRG 1 cut(s) 1073
Bsp1286I GDGCHC 1 cut(s) 1042
Bsp1407I TGTACA 1 cut(s) 1404
Bsp143I GATC 8 cut(s) 181, 258, 295, 1044, 1067, 1111, 1584, 1615
Bsp1720I GCTNAGC 1 cut(s) 97
BspACI CCGC 5 cut(s) 150, 283, 444, 785, 1493
BspANI GGCC 6 cut(s) 187, 764, 784, 900, 1278, 1630
BspCNI CTCAG 3 cut(s) 110, 568, 1280
BspLI GGNNCC 3 cut(s) 6, 531, 1134
BspMAI CTGCAG 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 1331
BspPI GGATC 4 cut(s) 266, 303, 1075, 1610
BspQI GCTCTTC 1 cut(s) 1521
BspTNI GGTCTC 2 cut(s) 264, 1390
BsrDI GCAATG 1 cut(s) 1347
BsrFI RCCGGY 1 cut(s) 1626
BsrGI TGTACA 1 cut(s) 1404
BsrI ACTGG 3 cut(s) 80, 85, 221
BssAI RCCGGY 1 cut(s) 1626
BssECI CCNNGG 3 cut(s) 335, 336, 509
BssMI GATC 8 cut(s) 181, 258, 295, 1044, 1067, 1111, 1584, 1615
BssT1I CCWWGG 1 cut(s) 509
Bst2UI CCWGG 3 cut(s) 337, 590, 641
Bst4CI ACNGT 4 cut(s) 163, 485, 1019, 1758
Bst6I CTCTTC 3 cut(s) 198, 568, 1521
BstAUI TGTACA 1 cut(s) 1404
BstC8I GCNNGC 2 cut(s) 103, 1632
BstDEI CTNAG 7 cut(s) 97, 286, 406, 576, 770, 1032, 1267
BstENI CCTNNNNNAGG 1 cut(s) 769
BstF5I GGATG 3 cut(s) 1133, 1528, 1605
BstH2I RGCGCY 1 cut(s) 1513
BstHHI GCGC 1 cut(s) 1512
BstKTI GATC 8 cut(s) 184, 261, 298, 1047, 1070, 1114, 1587, 1618
BstMAI GTCTC 4 cut(s) 264, 549, 1006, 1390
BstMBI GATC 8 cut(s) 181, 258, 295, 1044, 1067, 1111, 1584, 1615
BstMCI CGRYCG 3 cut(s) 184, 283, 901
BstMWI GCNNNNNNNGC 7 cut(s) 11, 35, 102, 111, 624, 1537, 1602
BstNI CCWGG 3 cut(s) 337, 590, 641
BstPAI GACNNNNGTC 2 cut(s) 327, 900
BstSCI CCNGG 3 cut(s) 335, 588, 639
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 5 cut(s) 105, 287, 428, 695, 980
BstV2I GAAGAC 3 cut(s) 323, 1566, 1698
BstZI CGGCCG 1 cut(s) 898
BsuI GTATCC 2 cut(s) 206, 749
BsuRI GGCC 6 cut(s) 187, 764, 784, 900, 1278, 1630
BtgZI GCGATG 1 cut(s) 1649
BtsCI GGATG 3 cut(s) 1133, 1528, 1605
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 1 cut(s) 918
BveI ACCTGC 1 cut(s) 1331
Cac8I GCNNGC 2 cut(s) 103, 1632
CaiI CAGNNNCTG 1 cut(s) 689
CfoI GCGC 1 cut(s) 1512
Cfr10I RCCGGY 1 cut(s) 1626
Cfr13I GGNCC 2 cut(s) 529, 782
CseI GACGC 1 cut(s) 527
Csp6I GTAC 4 cut(s) 1098, 1177, 1335, 1405
CviAII CATG 6 cut(s) 130, 221, 535, 556, 989, 1057
CviQI GTAC 4 cut(s) 1098, 1177, 1335, 1405
DdeI CTNAG 7 cut(s) 97, 286, 406, 576, 770, 1032, 1267
DpnI GATC 8 cut(s) 183, 260, 297, 1046, 1069, 1113, 1586, 1617
DpnII GATC 8 cut(s) 181, 258, 295, 1044, 1067, 1111, 1584, 1615
DraIII CACNNNGTG 1 cut(s) 46
EaeI YGGCCR 3 cut(s) 185, 898, 1628
EagI CGGCCG 1 cut(s) 898
Eam1104I CTCTTC 3 cut(s) 198, 568, 1521
EarI CTCTTC 3 cut(s) 198, 568, 1521
EclXI CGGCCG 1 cut(s) 898
Eco130I CCWWGG 1 cut(s) 509
Eco147I AGGCCT 1 cut(s) 764
Eco24I GRGCYC 1 cut(s) 1042
Eco31I GGTCTC 2 cut(s) 264, 1390
Eco32I GATATC 2 cut(s) 137, 1749
Eco47I GGWCC 1 cut(s) 529
Eco52I CGGCCG 1 cut(s) 898
Eco57I CTGAAG 3 cut(s) 84, 375, 1237
Eco88I CYCGRG 1 cut(s) 1073
EcoNI CCTNNNNNAGG 1 cut(s) 769
EcoO109I RGGNCCY 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 1052
EcoRII CCWGG 3 cut(s) 335, 588, 639
EcoRV GATATC 2 cut(s) 137, 1749
EcoT14I CCWWGG 1 cut(s) 509
EcoT22I ATGCAT 1 cut(s) 620
EcoT38I GRGCYC 1 cut(s) 1042
ErhI CCWWGG 1 cut(s) 509
Esp3I CGTCTC 2 cut(s) 549, 1006
FaeI CATG 6 cut(s) 133, 224, 538, 559, 992, 1060
FalI AAGNNNNNCTT 2 cut(s) 1685, 1717
FaqI GGGAC 1 cut(s) 515
FatI CATG 6 cut(s) 129, 220, 534, 555, 988, 1056
FbaI TGATCA 2 cut(s) 1111, 1584
Fnu4HI GCNGC 6 cut(s) 94, 301, 442, 684, 785, 969
FokI GGATG 3 cut(s) 1140, 1535, 1592
FriOI GRGCYC 1 cut(s) 1042
Fsp4HI GCNGC 6 cut(s) 94, 301, 442, 684, 785, 969
FspBI CTAG 4 cut(s) 668, 674, 704, 1329
GlaI GCGC 1 cut(s) 1511
GluI GCNGC 6 cut(s) 94, 301, 442, 684, 785, 969
GsuI CTGGAG 3 cut(s) 572, 662, 1338
HaeII RGCGCY 1 cut(s) 1513
HaeIII GGCC 6 cut(s) 187, 764, 784, 900, 1278, 1630
HapII CCGG 2 cut(s) 8, 1627
HgaI GACGC 1 cut(s) 527
HhaI GCGC 1 cut(s) 1512
Hin1II CATG 6 cut(s) 133, 224, 538, 559, 992, 1060
Hin6I GCGC 1 cut(s) 1510
HinP1I GCGC 1 cut(s) 1510
HincII GTYRAC 2 cut(s) 994, 1672
HindII GTYRAC 2 cut(s) 994, 1672
HinfI GANTC 3 cut(s) 328, 1673, 1730
HpaII CCGG 2 cut(s) 8, 1627
HphI GGTGA 2 cut(s) 32, 644
Hpy166II GTNNAC 4 cut(s) 159, 994, 1405, 1672
Hpy188I TCNGA 6 cut(s) 175, 814, 1044, 1270, 1399, 1429
Hpy188III TCNNGA 6 cut(s) 143, 820, 922, 1075, 1241, 1355
Hpy8I GTNNAC 4 cut(s) 159, 994, 1405, 1672
Hpy99I CGWCG 4 cut(s) 311, 323, 701, 1460
HpyAV CCTTC 6 cut(s) 130, 847, 910, 1440, 1629, 1655
HpyCH4III ACNGT 4 cut(s) 163, 485, 1019, 1758
HpyCH4IV ACGT 1 cut(s) 1458
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 35, 102, 111, 624, 1537, 1602
HpyF3I CTNAG 7 cut(s) 97, 286, 406, 576, 770, 1032, 1267
HpySE526I ACGT 1 cut(s) 1458
Hsp92II CATG 6 cut(s) 133, 224, 538, 559, 992, 1060
HspAI GCGC 1 cut(s) 1510
Ksp22I TGATCA 2 cut(s) 1111, 1584
Kzo9I GATC 8 cut(s) 181, 258, 295, 1044, 1067, 1111, 1584, 1615
LguI GCTCTTC 1 cut(s) 1521
LmnI GCTCC 4 cut(s) 10, 774, 1325, 1357
Lsp1109I GCAGC 5 cut(s) 105, 287, 428, 695, 980
LweI GCATC 2 cut(s) 1410, 1614
MaeI CTAG 4 cut(s) 668, 674, 704, 1329
MaeII ACGT 1 cut(s) 1458
MaeIII GTNAC 1 cut(s) 1343
MalI GATC 8 cut(s) 183, 260, 297, 1046, 1069, 1113, 1586, 1617
MboI GATC 8 cut(s) 181, 258, 295, 1044, 1067, 1111, 1584, 1615
MfeI CAATTG 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 1042
MlyI GAGTC 2 cut(s) 337, 1667
MmeI TCCRAC 1 cut(s) 1638
Mph1103I ATGCAT 1 cut(s) 620
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 3 cut(s) 890, 933, 1089
MslI CAYNNNNRTG 2 cut(s) 511, 604
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 2 cut(s) 8, 1627
MspR9I CCNGG 3 cut(s) 337, 590, 641
MunI CAATTG 1 cut(s) 197
Mva1269I GAATGC 3 cut(s) 152, 641, 1027
MvaI CCWGG 3 cut(s) 337, 590, 641
MwoI GCNNNNNNNGC 7 cut(s) 11, 35, 102, 111, 624, 1537, 1602
NdeII GATC 8 cut(s) 181, 258, 295, 1044, 1067, 1111, 1584, 1615
NlaIII CATG 6 cut(s) 133, 224, 538, 559, 992, 1060
NlaIV GGNNCC 3 cut(s) 6, 531, 1134
NsiI ATGCAT 1 cut(s) 620
OliI CACNNNNGTG 1 cut(s) 511
PaeR7I CTCGAG 1 cut(s) 1073
PasI CCCWGGG 1 cut(s) 336
PceI AGGCCT 1 cut(s) 764
PciSI GCTCTTC 1 cut(s) 1521
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 3 cut(s) 152, 641, 1027
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 1 cut(s) 1730
PflFI GACNNNGTC 1 cut(s) 556
PkrI GCNGC 6 cut(s) 95, 302, 443, 685, 786, 970
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 2 cut(s) 336, 1667
PpsI GAGTC 2 cut(s) 336, 1667
PpuMI RGGWCCY 1 cut(s) 529
PshAI GACNNNNGTC 2 cut(s) 327, 900
PsiI TTATAA 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 335, 588, 639
PspGI CCWGG 3 cut(s) 335, 588, 639
PspN4I GGNNCC 3 cut(s) 6, 531, 1134
PspPI GGNCC 2 cut(s) 529, 782
PspPPI RGGWCCY 1 cut(s) 529
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 689
PsyI GACNNNGTC 1 cut(s) 556
PvuI CGATCG 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 4 cut(s) 1099, 1178, 1336, 1406
RsaNI GTAC 4 cut(s) 1098, 1177, 1335, 1405
RseI CAYNNNNRTG 2 cut(s) 511, 604
SapI GCTCTTC 1 cut(s) 1521
SaqAI TTAA 3 cut(s) 890, 933, 1089
SatI GCNGC 6 cut(s) 94, 301, 442, 684, 785, 969
Sau3AI GATC 8 cut(s) 181, 258, 295, 1044, 1067, 1111, 1584, 1615
Sau96I GGNCC 2 cut(s) 529, 782
ScaI AGTACT 2 cut(s) 1099, 1178
SchI GAGTC 2 cut(s) 337, 1667
ScrFI CCNGG 3 cut(s) 337, 590, 641
SduI GDGCHC 1 cut(s) 1042
SfaNI GCATC 2 cut(s) 1410, 1614
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 1073
SinI GGWCC 1 cut(s) 529
SlaI CTCGAG 1 cut(s) 1073
SmiMI CAYNNNNRTG 2 cut(s) 511, 604
SmlI CTYRAG 3 cut(s) 325, 1073, 1164
SmoI CTYRAG 3 cut(s) 325, 1073, 1164
SpeI ACTAGT 1 cut(s) 673
SseBI AGGCCT 1 cut(s) 764
SsiI CCGC 5 cut(s) 150, 283, 444, 785, 1493
SspMI CTAG 4 cut(s) 668, 674, 704, 1329
StuI AGGCCT 1 cut(s) 764
StyD4I CCNGG 3 cut(s) 335, 588, 639
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 4 cut(s) 163, 485, 1019, 1758
TaiI ACGT 1 cut(s) 1461
TaqI TCGA 8 cut(s) 251, 261, 318, 979, 1074, 1215, 1316, 1455
TatI WGTACW 3 cut(s) 1097, 1176, 1404
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 1 cut(s) 1730
Tru1I TTAA 3 cut(s) 890, 933, 1089
Tru9I TTAA 3 cut(s) 890, 933, 1089
TscAI CASTG 1 cut(s) 918
TseI GCWGC 5 cut(s) 93, 300, 441, 683, 968
TspGWI ACGGA 3 cut(s) 324, 531, 1428
TspRI CASTG 1 cut(s) 918
Tth111I GACNNNGTC 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 529
XagI CCTNNNNNAGG 1 cut(s) 769
XapI RAATTY 6 cut(s) 224, 415, 950, 1052, 1146, 1203
XhoI CTCGAG 1 cut(s) 1073
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 4 cut(s) 668, 674, 704, 1329
ZrmI AGTACT 2 cut(s) 1099, 1178
Zsp2I ATGCAT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.