receptor-like protein kinase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| GUB_WAK_bind | PF13947 | 37 - 101 | 6.9e-13 | Wall-associated receptor kinase galacturonan-binding |
| WAK_assoc | PF14380 | 166 - 243 | 3.1e-13 | Wall-associated receptor kinase C-terminal |
| Pkinase | PF00069 | 327 - 598 | 1.7e-43 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 327 - 599 | 7.3e-41 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 603, 1678 |
| AciI | CCGC | 3 cut(s) | 599, 926, 1634 |
| AclWI | GGATC | 4 cut(s) | 296, 1216, 1290, 1751 |
| AcoI | YGGCCR | 2 cut(s) | 1039, 1769 |
| AcsI | RAATTY | 6 cut(s) | 98, 258, 1091, 1193, 1287, 1344 |
| AcyI | GRCGYC | 1 cut(s) | 135 |
| AfaI | GTAC | 4 cut(s) | 520, 1319, 1477, 1547 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 161, 162, 912 |
| AflIII | ACRYGT | 2 cut(s) | 479, 743 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 495 |
| AhlI | ACTAGT | 2 cut(s) | 755, 814 |
| AjiI | CACGTC | 1 cut(s) | 482 |
| AjnI | CCWGG | 1 cut(s) | 193 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 12, 44 |
| Alw26I | GTCTC | 2 cut(s) | 1074, 1531 |
| AlwI | GGATC | 4 cut(s) | 296, 1216, 1290, 1751 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 554 |
| Ama87I | CYCGRG | 2 cut(s) | 1214, 1305 |
| AoxI | GGCC | 6 cut(s) | 570, 903, 923, 1039, 1417, 1769 |
| ApeKI | GCWGC | 5 cut(s) | 111, 114, 554, 824, 1109 |
| ApoI | RAATTY | 6 cut(s) | 98, 258, 1091, 1193, 1287, 1344 |
| AspS9I | GGNCC | 2 cut(s) | 205, 923 |
| AsuC2I | CCSGG | 1 cut(s) | 1865 |
| AsuHPI | GGTGA | 1 cut(s) | 499 |
| AsuII | TTCGAA | 1 cut(s) | 1172 |
| AvaI | CYCGRG | 2 cut(s) | 1214, 1305 |
| AvaII | GGWCC | 1 cut(s) | 205 |
| BaeI | ACNNNNGTAYC | 3 cut(s) | 862, 895, 1872 |
| BanII | GRGCYC | 1 cut(s) | 1183 |
| BbsI | GAAGAC | 2 cut(s) | 1707, 1839 |
| BbvI | GCAGC | 5 cut(s) | 123, 126, 541, 836, 1121 |
| BccI | CCATC | 3 cut(s) | 511, 1263, 1567 |
| BceAI | ACGGC | 2 cut(s) | 1026, 1054 |
| BciT130I | CCWGG | 1 cut(s) | 195 |
| BciVI | GTATCC | 2 cut(s) | 890, 1478 |
| BclI | TGATCA | 4 cut(s) | 91, 588, 1252, 1725 |
| BcnI | CCSGG | 1 cut(s) | 1865 |
| BcoDI | GTCTC | 2 cut(s) | 1074, 1531 |
| BcuI | ACTAGT | 2 cut(s) | 755, 814 |
| BfaI | CTAG | 9 cut(s) | 177, 215, 303, 756, 809, 815, 845, 1470, 1509 |
| BfmI | CTRYAG | 3 cut(s) | 109, 253, 1679 |
| BfuI | GTATCC | 2 cut(s) | 890, 1478 |
| BisI | GCNGC | 6 cut(s) | 112, 115, 555, 825, 926, 1110 |
| BlsI | GCNGC | 6 cut(s) | 113, 116, 556, 826, 927, 1111 |
| BmcAI | AGTACT | 1 cut(s) | 1319 |
| Bme1390I | CCNGG | 2 cut(s) | 195, 1865 |
| Bme18I | GGWCC | 1 cut(s) | 205 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 495 |
| BmeT110I | CYCGRG | 2 cut(s) | 1214, 1305 |
| BmgBI | CACGTC | 1 cut(s) | 482 |
| BmgT120I | GGNCC | 2 cut(s) | 205, 923 |
| BmiI | GGNNCC | 1 cut(s) | 917 |
| BmrFI | CCNGG | 2 cut(s) | 195, 1865 |
| BmrI | ACTGGG | 1 cut(s) | 325 |
| BmsI | GCATC | 4 cut(s) | 586, 635, 746, 1551 |
| BmuI | ACTGGG | 1 cut(s) | 325 |
| BoxI | GACNNNNGTC | 2 cut(s) | 341, 1041 |
| BpiI | GAAGAC | 2 cut(s) | 1707, 1839 |
| BpmI | CTGGAG | 1 cut(s) | 1479 |
| Bpu14I | TTCGAA | 1 cut(s) | 1172 |
| BpuMI | CCSGG | 1 cut(s) | 1865 |
| Bsa29I | ATCGAT | 2 cut(s) | 577, 643 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1257 |
| BsaHI | GRCGYC | 1 cut(s) | 135 |
| BsaI | GGTCTC | 1 cut(s) | 1531 |
| BsaJI | CCNNGG | 3 cut(s) | 284, 919, 1863 |
| BsaWI | WCCGGW | 2 cut(s) | 484, 538 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1127, 1157 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 161, 162, 912 |
| Bse118I | RCCGGY | 1 cut(s) | 1767 |
| Bse1I | ACTGG | 1 cut(s) | 320 |
| Bse3DI | GCAATG | 1 cut(s) | 1488 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1257 |
| BseBI | CCWGG | 1 cut(s) | 195 |
| BseCI | ATCGAT | 2 cut(s) | 577, 643 |
| BseDI | CCNNGG | 3 cut(s) | 284, 919, 1863 |
| BseGI | GGATG | 2 cut(s) | 737, 1274 |
| BseJI | GATNNNNATC | 1 cut(s) | 1257 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 161, 162, 912 |
| BseMI | GCAATG | 1 cut(s) | 1488 |
| BseMII | CTCAG | 1 cut(s) | 1422 |
| BseNI | ACTGG | 1 cut(s) | 320 |
| BseRI | GAGGAG | 1 cut(s) | 1842 |
| BseX3I | CGGCCG | 1 cut(s) | 1039 |
| BseXI | GCAGC | 5 cut(s) | 123, 126, 541, 836, 1121 |
| BsgI | GTGCAG | 2 cut(s) | 801, 843 |
| Bsh1285I | CGRYCG | 3 cut(s) | 577, 643, 1042 |
| BshFI | GGCC | 6 cut(s) | 572, 905, 925, 1041, 1419, 1771 |
| BshVI | ATCGAT | 2 cut(s) | 577, 643 |
| BsiEI | CGRYCG | 3 cut(s) | 577, 643, 1042 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1214, 1305 |
| BsiSI | CCGG | 4 cut(s) | 485, 539, 1768, 1865 |
| BslFI | GGGAC | 1 cut(s) | 209 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 161, 162, 912 |
| BsmAI | GTCTC | 2 cut(s) | 1074, 1531 |
| BsmBI | CGTCTC | 1 cut(s) | 1074 |
| BsmFI | GGGAC | 1 cut(s) | 209 |
| BsnI | GGCC | 6 cut(s) | 572, 905, 925, 1041, 1419, 1771 |
| Bso31I | GGTCTC | 1 cut(s) | 1531 |
| BsoBI | CYCGRG | 2 cut(s) | 1214, 1305 |
| Bsp119I | TTCGAA | 1 cut(s) | 1172 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1183 |
| Bsp1407I | TGTACA | 2 cut(s) | 518, 1545 |
| Bsp19I | CCATGG | 1 cut(s) | 919 |
| BspACI | CCGC | 3 cut(s) | 599, 926, 1634 |
| BspANI | GGCC | 6 cut(s) | 572, 905, 925, 1041, 1419, 1771 |
| BspCNI | CTCAG | 1 cut(s) | 1421 |
| BspDI | ATCGAT | 2 cut(s) | 577, 643 |
| BspLI | GGNNCC | 1 cut(s) | 917 |
| BspMAI | CTGCAG | 1 cut(s) | 113 |
| BspPI | GGATC | 4 cut(s) | 296, 1216, 1290, 1751 |
| BspQI | GCTCTTC | 1 cut(s) | 1662 |
| BspT104I | TTCGAA | 1 cut(s) | 1172 |
| BspTNI | GGTCTC | 1 cut(s) | 1531 |
| BsrDI | GCAATG | 1 cut(s) | 1488 |
| BsrFI | RCCGGY | 1 cut(s) | 1767 |
| BsrGI | TGTACA | 2 cut(s) | 518, 1545 |
| BsrI | ACTGG | 1 cut(s) | 320 |
| BssAI | RCCGGY | 1 cut(s) | 1767 |
| BssECI | CCNNGG | 3 cut(s) | 284, 919, 1863 |
| BssNI | GRCGYC | 1 cut(s) | 135 |
| BssT1I | CCWWGG | 1 cut(s) | 919 |
| Bst2UI | CCWGG | 1 cut(s) | 195 |
| Bst4CI | ACNGT | 7 cut(s) | 185, 493, 518, 586, 675, 1160, 1899 |
| Bst6I | CTCTTC | 2 cut(s) | 1169, 1662 |
| BstACI | GRCGYC | 1 cut(s) | 135 |
| BstAUI | TGTACA | 2 cut(s) | 518, 1545 |
| BstBI | TTCGAA | 1 cut(s) | 1172 |
| BstC8I | GCNNGC | 2 cut(s) | 250, 1773 |
| BstDEI | CTNAG | 2 cut(s) | 911, 1408 |
| BstDSI | CCRYGG | 1 cut(s) | 919 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 910 |
| BstF5I | GGATG | 2 cut(s) | 737, 1274 |
| BstMAI | GTCTC | 2 cut(s) | 1074, 1531 |
| BstMCI | CGRYCG | 3 cut(s) | 577, 643, 1042 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 141, 459, 560, 569 |
| BstNI | CCWGG | 1 cut(s) | 195 |
| BstNSI | RCATGY | 1 cut(s) | 747 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 341, 1041 |
| BstSCI | CCNGG | 2 cut(s) | 193, 1863 |
| BstSFI | CTRYAG | 3 cut(s) | 109, 253, 1679 |
| BstV1I | GCAGC | 5 cut(s) | 123, 126, 541, 836, 1121 |
| BstV2I | GAAGAC | 2 cut(s) | 1707, 1839 |
| BstZI | CGGCCG | 1 cut(s) | 1039 |
| Bsu15I | ATCGAT | 2 cut(s) | 577, 643 |
| BsuI | GTATCC | 2 cut(s) | 890, 1478 |
| BsuRI | GGCC | 6 cut(s) | 572, 905, 925, 1041, 1419, 1771 |
| BsuTUI | ATCGAT | 2 cut(s) | 577, 643 |
| BtgI | CCRYGG | 1 cut(s) | 919 |
| BtgZI | GCGATG | 2 cut(s) | 609, 1790 |
| BtrI | CACGTC | 1 cut(s) | 482 |
| BtsCI | GGATG | 2 cut(s) | 737, 1274 |
| BtsI | GCAGTG | 2 cut(s) | 617, 1059 |
| BtsIMutI | CAGTG | 3 cut(s) | 617, 680, 1059 |
| Cac8I | GCNNGC | 2 cut(s) | 250, 1773 |
| CaiI | CAGNNNCTG | 1 cut(s) | 554 |
| Cfr10I | RCCGGY | 1 cut(s) | 1767 |
| Cfr13I | GGNCC | 2 cut(s) | 205, 923 |
| ClaI | ATCGAT | 2 cut(s) | 577, 643 |
| CseI | GACGC | 2 cut(s) | 124, 1640 |
| Csp6I | GTAC | 4 cut(s) | 519, 1318, 1476, 1546 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 112, 147 |
| CviAII | CATG | 6 cut(s) | 238, 397, 744, 920, 1130, 1198 |
| CviQI | GTAC | 4 cut(s) | 519, 1318, 1476, 1546 |
| DdeI | CTNAG | 2 cut(s) | 911, 1408 |
| DriI | GACNNNNNGTC | 1 cut(s) | 495 |
| EaeI | YGGCCR | 2 cut(s) | 1039, 1769 |
| EagI | CGGCCG | 1 cut(s) | 1039 |
| Eam1104I | CTCTTC | 2 cut(s) | 1169, 1662 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 495 |
| EarI | CTCTTC | 2 cut(s) | 1169, 1662 |
| EclXI | CGGCCG | 1 cut(s) | 1039 |
| Eco130I | CCWWGG | 1 cut(s) | 919 |
| Eco147I | AGGCCT | 1 cut(s) | 905 |
| Eco24I | GRGCYC | 1 cut(s) | 1183 |
| Eco31I | GGTCTC | 1 cut(s) | 1531 |
| Eco47I | GGWCC | 1 cut(s) | 205 |
| Eco52I | CGGCCG | 1 cut(s) | 1039 |
| Eco88I | CYCGRG | 2 cut(s) | 1214, 1305 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 910 |
| EcoRI | GAATTC | 2 cut(s) | 258, 1193 |
| EcoRII | CCWGG | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 1 cut(s) | 919 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 739 |
| EcoT38I | GRGCYC | 1 cut(s) | 1183 |
| ErhI | CCWWGG | 1 cut(s) | 919 |
| Esp3I | CGTCTC | 1 cut(s) | 1074 |
| FaeI | CATG | 6 cut(s) | 241, 400, 747, 923, 1133, 1201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1826, 1858 |
| FaqI | GGGAC | 1 cut(s) | 209 |
| FatI | CATG | 6 cut(s) | 237, 396, 743, 919, 1129, 1197 |
| FbaI | TGATCA | 4 cut(s) | 91, 588, 1252, 1725 |
| FblI | GTMKAC | 2 cut(s) | 603, 1678 |
| Fnu4HI | GCNGC | 6 cut(s) | 112, 115, 555, 825, 926, 1110 |
| FokI | GGATG | 2 cut(s) | 724, 1281 |
| FriOI | GRGCYC | 1 cut(s) | 1183 |
| Fsp4HI | GCNGC | 6 cut(s) | 112, 115, 555, 825, 926, 1110 |
| FspBI | CTAG | 9 cut(s) | 177, 215, 303, 756, 809, 815, 845, 1470, 1509 |
| GluI | GCNGC | 6 cut(s) | 112, 115, 555, 825, 926, 1110 |
| GsuI | CTGGAG | 1 cut(s) | 1479 |
| HaeIII | GGCC | 6 cut(s) | 572, 905, 925, 1041, 1419, 1771 |
| HapII | CCGG | 4 cut(s) | 485, 539, 1768, 1865 |
| HgaI | GACGC | 2 cut(s) | 124, 1640 |
| Hin1I | GRCGYC | 1 cut(s) | 135 |
| Hin1II | CATG | 6 cut(s) | 241, 400, 747, 923, 1133, 1201 |
| HincII | GTYRAC | 3 cut(s) | 191, 346, 1135 |
| HindII | GTYRAC | 3 cut(s) | 191, 346, 1135 |
| HinfI | GANTC | 4 cut(s) | 662, 705, 1142, 1814 |
| HpaII | CCGG | 4 cut(s) | 485, 539, 1768, 1865 |
| HphI | GGTGA | 1 cut(s) | 499 |
| Hpy188I | TCNGA | 8 cut(s) | 140, 288, 336, 955, 1185, 1411, 1540, 1570 |
| Hpy188III | TCNNGA | 9 cut(s) | 666, 702, 961, 1063, 1216, 1280, 1496, 1509, 1655 |
| Hpy99I | CGWCG | 3 cut(s) | 71, 140, 842 |
| HpyAV | CCTTC | 6 cut(s) | 988, 1051, 1581, 1770, 1774, 1796 |
| HpyCH4III | ACNGT | 7 cut(s) | 185, 493, 518, 586, 675, 1160, 1899 |
| HpyCH4IV | ACGT | 4 cut(s) | 66, 222, 401, 481 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 141, 459, 560, 569 |
| HpyF3I | CTNAG | 2 cut(s) | 911, 1408 |
| HpySE526I | ACGT | 4 cut(s) | 66, 222, 401, 481 |
| Hsp92I | GRCGYC | 1 cut(s) | 135 |
| Hsp92II | CATG | 6 cut(s) | 241, 400, 747, 923, 1133, 1201 |
| Ksp22I | TGATCA | 4 cut(s) | 91, 588, 1252, 1725 |
| LguI | GCTCTTC | 1 cut(s) | 1662 |
| LmnI | GCTCC | 4 cut(s) | 21, 915, 1466, 1498 |
| Lsp1109I | GCAGC | 5 cut(s) | 123, 126, 541, 836, 1121 |
| LweI | GCATC | 4 cut(s) | 586, 635, 746, 1551 |
| MaeI | CTAG | 9 cut(s) | 177, 215, 303, 756, 809, 815, 845, 1470, 1509 |
| MaeII | ACGT | 4 cut(s) | 66, 222, 401, 481 |
| MaeIII | GTNAC | 3 cut(s) | 179, 487, 1687 |
| MfeI | CAATTG | 2 cut(s) | 124, 623 |
| MhlI | GDGCHC | 1 cut(s) | 1183 |
| MlyI | GAGTC | 1 cut(s) | 1136 |
| MmeI | TCCRAC | 4 cut(s) | 118, 359, 1558, 1779 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 739 |
| MseI | TTAA | 6 cut(s) | 74, 294, 684, 1031, 1074, 1230 |
| MslI | CAYNNNNRTG | 1 cut(s) | 742 |
| MspI | CCGG | 4 cut(s) | 485, 539, 1768, 1865 |
| MspR9I | CCNGG | 2 cut(s) | 195, 1865 |
| MunI | CAATTG | 2 cut(s) | 124, 623 |
| MvaI | CCWGG | 1 cut(s) | 195 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 141, 459, 560, 569 |
| NciI | CCSGG | 1 cut(s) | 1865 |
| NcoI | CCATGG | 1 cut(s) | 919 |
| NlaIII | CATG | 6 cut(s) | 241, 400, 747, 923, 1133, 1201 |
| NlaIV | GGNNCC | 1 cut(s) | 917 |
| NmuCI | GTSAC | 1 cut(s) | 487 |
| NsiI | ATGCAT | 2 cut(s) | 6, 739 |
| NspI | RCATGY | 1 cut(s) | 747 |
| NspV | TTCGAA | 1 cut(s) | 1172 |
| PaeR7I | CTCGAG | 2 cut(s) | 1214, 1305 |
| PceI | AGGCCT | 1 cut(s) | 905 |
| PciI | ACATGT | 1 cut(s) | 743 |
| PciSI | GCTCTTC | 1 cut(s) | 1662 |
| PfeI | GAWTC | 3 cut(s) | 662, 705, 1814 |
| PflFI | GACNNNGTC | 1 cut(s) | 221 |
| PkrI | GCNGC | 6 cut(s) | 113, 116, 556, 826, 927, 1111 |
| Ple19I | CGATCG | 2 cut(s) | 577, 643 |
| PleI | GAGTC | 1 cut(s) | 1136 |
| PpsI | GAGTC | 1 cut(s) | 1136 |
| PscI | ACATGT | 1 cut(s) | 743 |
| PshAI | GACNNNNGTC | 2 cut(s) | 341, 1041 |
| Psp6I | CCWGG | 1 cut(s) | 193 |
| PspGI | CCWGG | 1 cut(s) | 193 |
| PspN4I | GGNNCC | 1 cut(s) | 917 |
| PspPI | GGNCC | 2 cut(s) | 205, 923 |
| PspXI | VCTCGAGB | 1 cut(s) | 1305 |
| PstI | CTGCAG | 1 cut(s) | 113 |
| PstNI | CAGNNNCTG | 1 cut(s) | 554 |
| PsyI | GACNNNGTC | 1 cut(s) | 221 |
| PvuI | CGATCG | 2 cut(s) | 577, 643 |
| RsaI | GTAC | 4 cut(s) | 520, 1319, 1477, 1547 |
| RsaNI | GTAC | 4 cut(s) | 519, 1318, 1476, 1546 |
| RseI | CAYNNNNRTG | 1 cut(s) | 742 |
| SapI | GCTCTTC | 1 cut(s) | 1662 |
| SaqAI | TTAA | 6 cut(s) | 74, 294, 684, 1031, 1074, 1230 |
| SatI | GCNGC | 6 cut(s) | 112, 115, 555, 825, 926, 1110 |
| Sau96I | GGNCC | 2 cut(s) | 205, 923 |
| ScaI | AGTACT | 1 cut(s) | 1319 |
| SchI | GAGTC | 1 cut(s) | 1136 |
| ScrFI | CCNGG | 2 cut(s) | 195, 1865 |
| SduI | GDGCHC | 1 cut(s) | 1183 |
| SfaNI | GCATC | 4 cut(s) | 586, 635, 746, 1551 |
| SfcI | CTRYAG | 3 cut(s) | 109, 253, 1679 |
| Sfr274I | CTCGAG | 2 cut(s) | 1214, 1305 |
| SfuI | TTCGAA | 1 cut(s) | 1172 |
| SinI | GGWCC | 1 cut(s) | 205 |
| SlaI | CTCGAG | 2 cut(s) | 1214, 1305 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 742 |
| SmlI | CTYRAG | 2 cut(s) | 1214, 1305 |
| SmoI | CTYRAG | 2 cut(s) | 1214, 1305 |
| SpeI | ACTAGT | 2 cut(s) | 755, 814 |
| SseBI | AGGCCT | 1 cut(s) | 905 |
| SsiI | CCGC | 3 cut(s) | 599, 926, 1634 |
| SspMI | CTAG | 9 cut(s) | 177, 215, 303, 756, 809, 815, 845, 1470, 1509 |
| StuI | AGGCCT | 1 cut(s) | 905 |
| StyD4I | CCNGG | 2 cut(s) | 193, 1863 |
| StyI | CCWWGG | 1 cut(s) | 919 |
| TaaI | ACNGT | 7 cut(s) | 185, 493, 518, 586, 675, 1160, 1899 |
| TaiI | ACGT | 4 cut(s) | 69, 225, 404, 484 |
| TatI | WGTACW | 3 cut(s) | 518, 1317, 1545 |
| TauI | GCSGC | 1 cut(s) | 928 |
| TfiI | GAWTC | 3 cut(s) | 662, 705, 1814 |
| Tru1I | TTAA | 6 cut(s) | 74, 294, 684, 1031, 1074, 1230 |
| Tru9I | TTAA | 6 cut(s) | 74, 294, 684, 1031, 1074, 1230 |
| TscAI | CASTG | 3 cut(s) | 624, 680, 1059 |
| TseFI | GTSAC | 1 cut(s) | 487 |
| TseI | GCWGC | 5 cut(s) | 111, 114, 554, 824, 1109 |
| Tsp45I | GTSAC | 1 cut(s) | 487 |
| TspDTI | ATGAA | 8 cut(s) | 284, 1116, 1186, 1206, 1213, 1401, 1680, 1793 |
| TspGWI | ACGGA | 4 cut(s) | 789, 1098, 1569, 1616 |
| TspRI | CASTG | 3 cut(s) | 624, 680, 1059 |
| Tth111I | GACNNNGTC | 1 cut(s) | 221 |
| VpaK11BI | GGWCC | 1 cut(s) | 205 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 910 |
| XapI | RAATTY | 6 cut(s) | 98, 258, 1091, 1193, 1287, 1344 |
| XbaI | TCTAGA | 1 cut(s) | 1508 |
| XceI | RCATGY | 1 cut(s) | 747 |
| XhoI | CTCGAG | 2 cut(s) | 1214, 1305 |
| XmiI | GTMKAC | 2 cut(s) | 603, 1678 |
| XspI | CTAG | 9 cut(s) | 177, 215, 303, 756, 809, 815, 845, 1470, 1509 |
| ZrmI | AGTACT | 1 cut(s) | 1319 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 739 |