MD07G1070400.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
6662745 .. 6666592
3848 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1070400.v1.1.491

Sequence Viewer

Length: 2013 bp
ATGGGAATAAGGGGAAGCAGGTCCTTCACTTGGTCTGCTTGGCTATTGATTATAGCTTTTCTTGTCGTTGGCTTATCCTGTGAAACTTGTAGAGCAAAGGATGATAGTACAAACTGTACCTTCTCCTGCGGAAATATTCACAACATAAGCTACCCTTTTCGACTAAAAGATGGTCCAAAGCACTGCGGCCACGTTCTGTATACGCTGTCTTGTGAGAACAACATTACTGTAGTAGACCTACCTTCCTCCGGAAAATACCATGTCCAGGCAATCAACTATGATAACCAAACAATCCGCATCATAGATCCTGGTCTTCAGAACAACAATTGCTCCTCCATGTCTCGAAATTTTCCGCTTTTGCCTTTTACGTCTACTCCATATAATTTTCATGGTAATTACACAGCGGATTCACAGCTTTCAACAGTTATATTTTACTTGAAGTGTTCGAATCCAATGAATTCTTCTGTGTATGTGGACACTGCTCCATGCTTCGATGCAAGTGCTTCTTCTTCGAGCCAACCAAAAACGTATAGCTACGTCAAGGTCGGTTGGATGGAAGTAGGGGATTTGGATGAGGGTTGCAGTGCAGAGTGGATGACTTTCGCGCTCTCGAGCTACGTCAAGGACTACAACACCTCTTATGAAAACATACACAAGGCGCTCATGTATGGATTTGAGCTTCGAGTATATAGTGTTGATGAAATGGGTCCAATGTGTCAATGGTGGATTAATCTTAAATGTTTCCCACACAGCATCCCAGGTTTCTTTCGATTTCTGGGGGAGGCGACTTACGTTTTCTTTGCTCGTGGAAGCTTCTACATTGATAAGTTTCTTTGGTTTCGGGCGATATCCTTCAAAAATGGATGGTTGCCATTGATTTGCCTCGGTTTATTTTTAGCAGTAAGACTACTTTTAGGGGTTCCATTTGTGATTGCATTTCTGATCTATAGATGGCGAAGAAGACATTTGTCAGGGTTTAGCATCATCGAAGATTTTCTGCAAACCGAAAACAACTTCATGCCAATAAGGTACTCTTACTCGGACGTTAAGAGAATGACTAATAAATTTAAGGACAAGTTGGGCCAAGGCGGTTACGGTTCTGTATTTAAAGGAAAGTTACGCAGCAGTCGTTTTGTGGCGATTAAACTTTTGGGCAAGCCTAAAAACAATGGGCAGGACTTCACTAGTGAGGTAGCTACTATTGGAAGGATTCACCATGTTAATGTGGTGCAACTTGTTGGTTATTGTGTTGAAGGATCAAAGCGAGCTCTAGTGTATGATTTCATGCCTAATAGCTCTCTTGATAAATACATTTATTCCAAAGAAGGAAGTATCCCCTTAAGTTGCAAGAAGATGTATGAGATTGCTTTTGGAGTTGCTCGAGGGATCGAATATCTACATCAAGGTTGTGACATGCAAATTCTACATTTTGATATCAAGCCTCATAACATTCTTCTTGACGAGAACTTTAACCCGAAGATCTCCGATTTTGGGCTTGCAAAATTATATCCCGTAGACAATAGCATTGTTACTTTGACGGCAGCAAGAGGGACGATGGGATATATTGCTCCAGAGTTGTTCTACAAAAATATTGGAGGGGTCTCATACAAAGCTGATGTCTATAGTTTTGGAATGTTGTTGATGGAAATGGCAAGTAGAAGGAAAAATTTTAGTAGAATCGCAGAGCATTCGAGCCAAGATTACTTCCCGTTATGGGCTTACGATCAATATAGTGAGGGAAATGATCTCTTGGAGATGGGCAATGTTACAGAGGAGGAAAAGATAATGATAAAAAAGATGGTTATGACTGCTTTTTGGTGTATTCAAATGAAGCCAAGTGATCGCCCTTCGATGGACAAAGTCATACAAATGCTTGGAGGAGATGTTGAAAACCTAAAATTGCCCCCCAAACCTTTTCTTAACCAACAAGAAATGCCTGGAGTCGATATTCAAGGTAGTTTGAACCCAAAATCTTCTAACGGCGAGATAACGTGGAGTTTGTCAGCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

671

Amino Acids

76.14

Weight (kDa)

8.47

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 39 - 102 3.4e-19 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 355 - 625 5.6e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 356 - 623 8.6e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66910 AT1G66910 AT1G66920 AT1G66920 AT1G66920 AT1G66930 AT1G66930 AT1G66930 AT1G67000 AT1G70250 AT4G18250 AT5G38240 AT5G38240 AT5G38240 AT5G38250 AT5G38260 AT5G38280 AT5G38280
fragaria_vesca FvH4_1g03330 FvH4_4g26890 FvH4_4g26891 FvH4_4g26892 FvH4_4g26892 FvH4_4g26892 FvH4_4g26893 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26950 FvH4_4g26961 FvH4_4g26961 FvH4_4g34450 FvH4_4g34450 FvH4_4g34450 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g22251 FvH4_6g01490 FvH4_6g01490 FvH4_6g01490 FvH4_6g01502 FvH4_6g23830 FvH4_6g28430 FvH4_6g28450 FvH4_6g47250 FvH4_6g52670 FvH4_7g04150 FvH4_7g04150 FvH4_7g04160 FvH4_7g04170 FvH4_7g05990 FvH4_7g06001 FvH4_7g06010 FvH4_7g06010 FvH4_7g06060 FvH4_7g20630 FvH4_7g20630
malus_domestica MD01G1059700.v1.1 MD02G1233600.v1.1 MD02G1234400.v1.1 MD02G1234900.v1.1 MD02G1235600.v1.1 MD02G1245700.v1.1 MD02G1245800.v1.1 MD02G1246200.v1.1 MD02G1246300.v1.1 MD02G1246700.v1.1 MD02G1246800.v1.1 MD02G1247100.v1.1 MD02G1247300.v1.1 MD02G1247400.v1.1 MD02G1249300.v1.1 MD02G1249500.v1.1 MD02G1249700.v1.1 MD02G1250000.v1.1 MD02G1250200.v1.1 MD02G1250800.v1.1 MD02G1251800.v1.1 MD02G1252600.v1.1 MD02G1253600.v1.1 MD02G1273500.v1.1 MD02G1274000.v1.1 MD02G1274500.v1.1 MD04G1233100.v1.1 MD06G1136000.v1.1 MD06G1136200.v1.1 MD06G1136300.v1.1 MD06G1218300.v1.1 MD06G1218500.v1.1 MD06G1218600.v1.1 MD06G1219100.v1.1 MD07G1070000.v1.1 MD07G1070400.v1.1 MD07G1070700.v1.1 MD07G1071000.v1.1 MD07G1071100.v1.1 MD07G1137900.v1.1 MD07G1138000.v1.1 MD09G1255100.v1.1 MD12G1250700.v1.1 MD12G1251100.v1.1 MD12G1251500.v1.1 MD13G1036700.v1.1 MD13G1037900.v1.1 MD13G1038000.v1.1 MD16G1037900.v1.1 MD16G1038000.v1.1 MD16G1038600.v1.1 MD16G1038700.v1.1 MD16G1039200.v1.1 MD16G1039300.v1.1 MD16G1039500.v1.1
prunus_persica Prupe.1G315000_v2.0.a1 Prupe.1G315000_v2.0.a1 Prupe.1G315100_v2.0.a1 Prupe.1G315300_v2.0.a1 Prupe.1G315400_v2.0.a1 Prupe.1G496900_v2.0.a1 Prupe.2G033400_v2.0.a1 Prupe.2G047500_v2.0.a1 Prupe.2G048700_v2.0.a1 Prupe.2G067100_v2.0.a1 Prupe.2G087100_v2.0.a1 Prupe.2G087500_v2.0.a1 Prupe.2G087800_v2.0.a1 Prupe.2G088100_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088800_v2.0.a1 Prupe.2G092500_v2.0.a1 Prupe.2G092800_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093100_v2.0.a1 Prupe.2G093200_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093400_v2.0.a1 Prupe.2G093500_v2.0.a1 Prupe.2G093600_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G103300_v2.0.a1 Prupe.2G103900_v2.0.a1 Prupe.2G312200_v2.0.a1 Prupe.3G145200_v2.0.a1 Prupe.3G145600_v2.0.a1 Prupe.3G145700_v2.0.a1 Prupe.3G145800_v2.0.a1 Prupe.3G145900_v2.0.a1 Prupe.3G146000_v2.0.a1 Prupe.3G146100_v2.0.a1 Prupe.3G146200_v2.0.a1 Prupe.3G146600_v2.0.a1 Prupe.5G223800_v2.0.a1 Prupe.6G137800_v2.0.a1 Prupe.6G138000_v2.0.a1 Prupe.6G141600_v2.0.a1 Prupe.6G141900_v2.0.a1 Prupe.6G142000_v2.0.a1 Prupe.6G142100_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G352800_v2.0.a1 Prupe.6G352800_v2.0.a1
pyrus_communis pycom01g08840 pycom01g08860 pycom01g08920 pycom01g08960 pycom01g08990 pycom01g09000 pycom02g20230 pycom02g21120 pycom02g21140 pycom02g21350 pycom02g21360 pycom02g21400 pycom02g21510 pycom02g23440 pycom02g23450 pycom02g23480 pycom02g23490 pycom04g20650 pycom04g20690 pycom04g20710 pycom04g20730 pycom06g12760 pycom06g19500 pycom06g19510 pycom06g19530 pycom06g19540 pycom06g19570 pycom12g23070 pycom12g23080 pycom12g23100 pycom13g03140 pycom13g03250 pycom13g03290 pycom13g03300 pycom14g19010 pycom16g03300 pycom16g03320 pycom16g03370 pycom16g03380 pycom16g03400 pycom17g24970 pycom17g25020 pycom17g25150 pycom17g25180 pycom17g25240 pycom17g25250
rosa_chinensis RchiOBHm_Chr1g0325081 RchiOBHm_Chr1g0325091 RchiOBHm_Chr1g0325111 RchiOBHm_Chr1g0325131 RchiOBHm_Chr1g0328221 RchiOBHm_Chr1g0328241 RchiOBHm_Chr1g0328281 RchiOBHm_Chr1g0328331 RchiOBHm_Chr1g0328371 RchiOBHm_Chr1g0328401 RchiOBHm_Chr1g0328481 RchiOBHm_Chr1g0328501 RchiOBHm_Chr1g0328591 RchiOBHm_Chr1g0328601 RchiOBHm_Chr1g0328751 RchiOBHm_Chr1g0329621 RchiOBHm_Chr1g0329631 RchiOBHm_Chr1g0333261 RchiOBHm_Chr1g0333291 RchiOBHm_Chr1g0333331 RchiOBHm_Chr1g0333351 RchiOBHm_Chr1g0333441 RchiOBHm_Chr1g0333481 RchiOBHm_Chr1g0333571 RchiOBHm_Chr1g0333611 RchiOBHm_Chr1g0334191 RchiOBHm_Chr1g0334281 RchiOBHm_Chr1g0334791 RchiOBHm_Chr1g0334801 RchiOBHm_Chr1g0334831 RchiOBHm_Chr1g0334841 RchiOBHm_Chr1g0384001 RchiOBHm_Chr2g0138701 RchiOBHm_Chr2g0166291 RchiOBHm_Chr2g0166311 RchiOBHm_Chr2g0166321 RchiOBHm_Chr3g0449131 RchiOBHm_Chr3g0449161 RchiOBHm_Chr3g0449331 RchiOBHm_Chr3g0449361 RchiOBHm_Chr3g0449381 RchiOBHm_Chr3g0482511 RchiOBHm_Chr3g0482521 RchiOBHm_Chr3g0482701 RchiOBHm_Chr4g0405811 RchiOBHm_Chr4g0434521 RchiOBHm_Chr4g0434661 RchiOBHm_Chr4g0434681 RchiOBHm_Chr4g0434701 RchiOBHm_Chr4g0434711 RchiOBHm_Chr5g0047441 RchiOBHm_Chr5g0047581 RchiOBHm_Chr5g0047621 RchiOBHm_Chr5g0047671 RchiOBHm_Chr5g0047761 RchiOBHm_Chr5g0047851 RchiOBHm_Chr5g0047981 RchiOBHm_Chr5g0048071 RchiOBHm_Chr5g0059221 RchiOBHm_Chr5g0059231 RchiOBHm_Chr5g0078441 RchiOBHm_Chr6g0264171 RchiOBHm_Chr6g0264401 RchiOBHm_Chr6g0264411 RchiOBHm_Chr6g0273031 RchiOBHm_Chr6g0283331 RchiOBHm_Chr7g0185621 RchiOBHm_Chr7g0185831 RchiOBHm_Chr7g0185841 RchiOBHm_Chr7g0185851 RchiOBHm_Chr7g0185861 RchiOBHm_Chr7g0185871 RchiOBHm_Chr7g0185881 RchiOBHm_Chr7g0185901 RchiOBHm_Chr7g0185911 RchiOBHm_Chr7g0185931 RchiOBHm_Chr7g0185951 RchiOBHm_Chr7g0185991 RchiOBHm_Chr7g0186011 RchiOBHm_Chr7g0201241 RchiOBHm_Chr7g0209921
rosa_laevigata RLG00000004874 RLG00000004876 RLG00000004878 RLG00000004879 RLG00000004880 RLG00000004881 RLG00000006656 RLG00000006657 RLG00000006659 RLG00000006666 RLG00000008822 RLG00000008823 RLG00000014282 RLG00000019268 RLG00000020174 RLG00000021604 RLG00000021605 RLG00000021606 RLG00000023348 RLG00000024362 RLG00000025836 RLG00000025838 RLG00000025848 RLG00000025849 RLG00000025850 RLG00000029421 RLG00000029464 RLG00000029467 RLG00000029469 RLG00000029470 RLG00000029471 RLG00000029547 RLG00000029552 RLG00000029603 RLG00000029604 RLG00000029612 RLG00000029613 RLG00000029617 RLG00000029920 RLG00000029923 RLG00000029924 RLG00000029927 RLG00000029930 RLG00000029933 RLG00000029941 RLG00000030158 RLG00000030159 RLG00000034494 RLG00000035280 RLG00000035281
rosa_multiflora Rmu_co8033562.1_g000001 Rmu_co8168632.1_g000001 Rmu_co8248815.1_g000001 Rmu_co8346553.1_g000001 Rmu_co8352941.1_g000001 Rmu_co8372625.1_g000001 Rmu_co8486819.1_g000001 Rmu_sc0000148.1_g000013 Rmu_sc0000148.1_g000033 Rmu_sc0000148.1_g000045 Rmu_sc0000148.1_g000075 Rmu_sc0000194.1_g000011 Rmu_sc0000194.1_g000015 Rmu_sc0000194.1_g000018 Rmu_sc0000215.1_g000021 Rmu_sc0000494.1_g000001 Rmu_sc0000494.1_g000016 Rmu_sc0000574.1_g000038 Rmu_sc0000574.1_g000040 Rmu_sc0000580.1_g000027 Rmu_sc0000580.1_g000029 Rmu_sc0000725.1_g000001 Rmu_sc0000725.1_g000002 Rmu_sc0000725.1_g000005 Rmu_sc0000725.1_g000019 Rmu_sc0000895.1_g000001 Rmu_sc0000982.1_g000004 Rmu_sc0000982.1_g000034 Rmu_sc0000982.1_g000035 Rmu_sc0000982.1_g000087 Rmu_sc0000982.1_g000107 Rmu_sc0001009.1_g000033 Rmu_sc0001009.1_g000036 Rmu_sc0001129.1_g000001 Rmu_sc0001200.1_g000018 Rmu_sc0001234.1_g000006 Rmu_sc0001349.1_g000008 Rmu_sc0001563.1_g000027 Rmu_sc0001563.1_g000028 Rmu_sc0001563.1_g000038 Rmu_sc0001563.1_g000046 Rmu_sc0001654.1_g000006 Rmu_sc0001654.1_g000007 Rmu_sc0001829.1_g000005 Rmu_sc0002107.1_g000004 Rmu_sc0002107.1_g000007 Rmu_sc0002107.1_g000008 Rmu_sc0002548.1_g000036 Rmu_sc0002955.1_g000013 Rmu_sc0002955.1_g000029 Rmu_sc0002965.1_g000002 Rmu_sc0002965.1_g000003 Rmu_sc0002965.1_g000017 Rmu_sc0002965.1_g000027 Rmu_sc0002965.1_g000028 Rmu_sc0002969.1_g000010 Rmu_sc0002983.1_g000033 Rmu_sc0003166.1_g000001 Rmu_sc0003441.1_g000001 Rmu_sc0003441.1_g000010 Rmu_sc0003441.1_g000011 Rmu_sc0003776.1_g000034 Rmu_sc0003776.1_g000035 Rmu_sc0004178.1_g000005 Rmu_sc0004241.1_g000010 Rmu_sc0004356.1_g000003 Rmu_sc0004470.1_g000014 Rmu_sc0004470.1_g000018 Rmu_sc0004538.1_g000009 Rmu_sc0004646.1_g000041 Rmu_sc0004736.1_g000001 Rmu_sc0004736.1_g000016 Rmu_sc0004736.1_g000020 Rmu_sc0004753.1_g000001 Rmu_sc0004753.1_g000012 Rmu_sc0004805.1_g000025 Rmu_sc0004874.1_g000010 Rmu_sc0005613.1_g000002 Rmu_sc0005665.1_g000006 Rmu_sc0005665.1_g000022 Rmu_sc0005665.1_g000024 Rmu_sc0005665.1_g000030 Rmu_sc0005665.1_g000032 Rmu_sc0005665.1_g000034 Rmu_sc0005665.1_g000036 Rmu_sc0005665.1_g000037 Rmu_sc0005665.1_g000039 Rmu_sc0005783.1_g000007 Rmu_sc0005899.1_g000014 Rmu_sc0006031.1_g000005 Rmu_sc0006031.1_g000008 Rmu_sc0006661.1_g000006 Rmu_sc0006959.1_g000006 Rmu_sc0006959.1_g000008 Rmu_sc0006959.1_g000013 Rmu_sc0007214.1_g000004 Rmu_sc0007477.1_g000006 Rmu_sc0007681.1_g000001 Rmu_sc0007681.1_g000005 Rmu_sc0008439.1_g000002 Rmu_sc0008439.1_g000006 Rmu_sc0009205.1_g000009 Rmu_sc0009205.1_g000024 Rmu_sc0009869.1_g000001 Rmu_sc0009881.1_g000003 Rmu_sc0013038.1_g000007 Rmu_sc0013038.1_g000010 Rmu_sc0016170.1_g000010 Rmu_sc0016170.1_g000016 Rmu_sc0016751.1_g000005 Rmu_sc0017361.1_g000001 Rmu_sc0021068.1_g000001 Rmu_sc0021282.1_g000001 Rmu_sc0024214.1_g000002 Rmu_sc0025695.1_g000001 Rmu_sc0028145.1_g000002 Rmu_sc0036877.1_g000001 Rmu_sc0038968.1_g000001 Rmu_ssc0000047.1_g000006 Rmu_ssc0000047.1_g000007 Rmu_ssc0000388.1_g000041
rosa_roxburghii Rroxscaffold_176G00431510 Rroxscaffold_176G00431520 Rroxscaffold_1G00021210 Rroxscaffold_1G00033850 Rroxscaffold_1G00033940 Rroxscaffold_2G00085010 Rroxscaffold_3G00227760 Rroxscaffold_3G00248800 Rroxscaffold_3G00268520 Rroxscaffold_3G00268550 Rroxscaffold_3G00268590 Rroxscaffold_3G00268600 Rroxscaffold_4G00316560 Rroxscaffold_4G00316920 Rroxscaffold_4G00316930 Rroxscaffold_4G00317380 Rroxscaffold_4G00317420 Rroxscaffold_4G00317550 Rroxscaffold_4G00317560 Rroxscaffold_4G00317640 Rroxscaffold_4G00317660 Rroxscaffold_4G00320870 Rroxscaffold_4G00320880 Rroxscaffold_4G00321480 Rroxscaffold_4G00321690 Rroxscaffold_4G00321890 Rroxscaffold_5G00350290 Rroxscaffold_5G00375840 Rroxscaffold_5G00375890 Rroxscaffold_5G00375910 Rroxscaffold_5G00375920 Rroxscaffold_6G00398920 Rroxscaffold_6G00399010 Rroxscaffold_6G00399320 Rroxscaffold_6G00415790 Rroxscaffold_6G00427220 Rroxscaffold_6G00427340 Rroxscaffold_7G00203530
rosa_rugosa Rorug01G0049600 Rorug01G0073600.1 Rorug01G0074600 Rorug01G0074900 Rorug01G0075000 Rorug01G0075100 Rorug01G0075400 Rorug01G0081300 Rorug01G0081400 Rorug01G0103400 Rorug01G0103500 Rorug01G0108300 Rorug01G0108400 Rorug01G0108600 Rorug01G0108700 Rorug01G0109300 Rorug01G0110000 Rorug01G0110600 Rorug01G0111900 Rorug01G0116400 Rorug01G0116500 Rorug01G0116900 Rorug01G0117000 Rorug02G0305700 Rorug02G0305900 Rorug02G0521800 Rorug02G0521900 Rorug02G0522000 Rorug02G0522000 Rorug02G0522100 Rorug02G0618100 Rorug02G0618200 Rorug02G0618500 Rorug02G0619900 Rorug02G0620000 Rorug02G0620100 Rorug02G0620200 Rorug03G0100200 Rorug03G0197900 Rorug04G0062400 Rorug04G0277100 Rorug04G0277500 Rorug04G0277500 Rorug04G0277600 Rorug04G0277600 Rorug04G0277700 Rorug05G0156000.1 Rorug05G0236300 Rorug05G0236300 Rorug05G0236300 Rorug05G0236500 Rorug05G0236600 Rorug06G0008000 Rorug06G0008100 Rorug06G0008400 Rorug06G0008500 Rorug06G0008600 Rorug06G0008700 Rorug06G0009400 Rorug06G0009500 Rorug06G0009600 Rorug06G0030300 Rorug06G0087000 Rorug06G0099800 Rorug06G0471600 Rorug06G0471600 Rorug06G0471700 Rorug07G0117400
rosa_samantha Rh1AG090600 Rh1AG092700 Rh1AG093100 Rh1AG093800 Rh1AG131300 Rh1AG131600 Rh1AG132000 Rh1AG133000 Rh1AG140900 Rh1AG165100 Rh1BG072500 Rh1BG074100 Rh1BG074300 Rh1BG074800 Rh1BG074900 Rh1BG100800 Rh1BG101000 Rh1BG101400 Rh1BG108200 Rh1CG095600 Rh1CG125200 Rh1CG125500 Rh1CG125800 Rh1CG132800 Rh1DG095200 Rh1DG095600 Rh1DG095700 Rh1DG096400 Rh1DG096900 Rh1DG097000 Rh1DG136700 Rh1DG137000 Rh1DG137200 Rh1DG137900 Rh1DG138200 Rh1DG138400 Rh1DG138800 Rh1DG139200 Rh1DG142400 Rh1DG145000 Rh2AG588100 Rh2BG460400 Rh2BG600100 Rh2CG571000 Rh2DG469800 Rh2DG610300 Rh3AG016800 Rh3AG249300 Rh3BG016900 Rh3BG017900 Rh3BG018000 Rh3CG016000 Rh3CG016900 Rh3CG017100 Rh3CG282700 Rh3DG017200 Rh3DG018200 Rh3DG018600 Rh3DG276000 Rh3DG278500 Rh4AG133800 Rh4AG332900 Rh4AG333100 Rh4AG334100 Rh4BG340600 Rh4BG340900 Rh4BG341800 Rh4CG355800 Rh4DG335900 Rh5CG351100 Rh5CG351300 Rh5CG351400 Rh5CG351700 Rh5CG351900 Rh5CG352200 Rh5CG421500 Rh6AG131900 Rh6AG265700 Rh6BG129100 Rh6CG124600 Rh6CG127100 Rh6CG267800 Rh6DG111300 Rh6DG114600 Rh7AG070800 Rh7AG251300 Rh7CG077200 Rh7CG077300 Rh7CG077500 Rh7CG268100 Rh7DG076900 Rh7DG077200 Rh7DG077300 Rh7DG077700 Rh7DG257700
rosa_wichuraiana Rw0G013150 Rw0G018000 Rw0G019300 Rw0G022850 Rw1G007090 Rw1G007130 Rw1G007160 Rw1G007210 Rw1G007770 Rw1G007850 Rw1G010720 Rw1G010780 Rw1G010860 Rw1G010890 Rw1G010900 Rw1G010950 Rw1G010960 Rw1G011020 Rw1G011060 Rw1G011100 Rw1G011420 Rw2G029200 Rw2G049010 Rw3G001260 Rw3G001370 Rw3G001400 Rw3G001430 Rw3G022340 Rw3G022510 Rw4G010890 Rw4G028850 Rw4G028930 Rw4G028950 Rw4G028970 Rw4G029040 Rw4G029060 Rw4G029080 Rw4G029100 Rw4G029110 Rw4G029120 Rw5G029450 Rw5G029480 Rw5G029570 Rw5G036350 Rw6G011290 Rw6G011310 Rw6G011530 Rw7G006420 Rw7G006430 Rw7G006460 Rw7G021320

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 9
AccI GTMKAC 4 cut(s) 200, 234, 371, 1515
AccII CGCG 1 cut(s) 605
AccIII TCCGGA 1 cut(s) 248
AciI CCGC 6 cut(s) 129, 186, 295, 353, 404, 1089
AclWI GGATC 3 cut(s) 299, 1264, 1394
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 5 cut(s) 346, 457, 1064, 1419, 1666
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 3 cut(s) 109, 118, 1031
AfiI CCNNNNNNNGG 6 cut(s) 30, 248, 265, 1491, 1714, 1852
AflII CTTAAG 1 cut(s) 1339
AgsI TTSAA 8 cut(s) 420, 439, 856, 1253, 1826, 1889, 1952, 1963
AhlI ACTAGT 1 cut(s) 1184
AjnI CCWGG 4 cut(s) 264, 307, 757, 1936
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
Alw21I GWGCWC 1 cut(s) 1270
Alw26I GTCTC 2 cut(s) 345, 1606
AlwI GGATC 3 cut(s) 299, 1264, 1394
Ama87I CYCGRG 2 cut(s) 610, 1380
Aor13HI TCCGGA 1 cut(s) 248
AoxI GGCC 2 cut(s) 187, 1081
ApeKI GCWGC 2 cut(s) 1122, 1541
ApoI RAATTY 5 cut(s) 346, 457, 1064, 1419, 1666
ArsI GACNNNNNNTTYG 2 cut(s) 1602, 1634
AseI ATTAAT 1 cut(s) 729
Asp700I GAANNNNTTC 1 cut(s) 993
AspLEI GCGC 2 cut(s) 607, 661
AspS9I GGNCC 4 cut(s) 21, 173, 707, 1081
AsuHPI GGTGA 1 cut(s) 1205
AsuII TTCGAA 1 cut(s) 446
AvaI CYCGRG 2 cut(s) 610, 1380
AvaII GGWCC 3 cut(s) 21, 173, 707
BanII GRGCYC 1 cut(s) 1270
BauI CACGAG 1 cut(s) 804
BbsI GAAGAC 2 cut(s) 305, 967
Bbv12I GWGCWC 1 cut(s) 1270
BbvI GCAGC 2 cut(s) 1134, 1553
BccI CCATC 9 cut(s) 164, 547, 858, 945, 1549, 1636, 1750, 1792, 1846
BceAI ACGGC 2 cut(s) 1554, 1996
BcgI CGANNNNNNTGC 4 cut(s) 482, 516, 1671, 1705
BciT130I CCWGG 4 cut(s) 266, 309, 759, 1938
BciVI GTATCC 1 cut(s) 1343
BcoDI GTCTC 2 cut(s) 345, 1606
BcuI ACTAGT 1 cut(s) 1184
BfaI CTAG 3 cut(s) 1185, 1271, 2007
BfmI CTRYAG 3 cut(s) 228, 946, 1621
BfoI RGCGCY 1 cut(s) 662
BfrI CTTAAG 1 cut(s) 1339
BfuAI ACCTGC 1 cut(s) 9
BfuI GTATCC 1 cut(s) 1343
BglII AGATCT 1 cut(s) 1479
BisI GCNGC 3 cut(s) 187, 1123, 1542
BlsI GCNGC 3 cut(s) 188, 1124, 1543
Bme1390I CCNGG 4 cut(s) 266, 309, 759, 1938
Bme18I GGWCC 3 cut(s) 21, 173, 707
BmeT110I CYCGRG 2 cut(s) 610, 1380
BmgT120I GGNCC 4 cut(s) 21, 173, 707, 1081
BmiI GGNNCC 2 cut(s) 708, 921
BmrFI CCNGG 4 cut(s) 266, 309, 759, 1938
BmsI GCATC 4 cut(s) 306, 484, 762, 990
BoxI GACNNNNGTC 1 cut(s) 967
BpiI GAAGAC 2 cut(s) 305, 967
BpmI CTGGAG 2 cut(s) 1554, 1959
Bpu14I TTCGAA 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 1606
BsaJI CCNNGG 3 cut(s) 757, 883, 1084
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 6 cut(s) 314, 344, 358, 388, 1869, 1899
Bsc4I CCNNNNNNNGG 6 cut(s) 30, 248, 265, 1491, 1714, 1852
Bse3DI GCAATG 1 cut(s) 1768
BseAI TCCGGA 1 cut(s) 248
BseBI CCWGG 4 cut(s) 266, 309, 759, 1938
BseDI CCNNGG 3 cut(s) 757, 883, 1084
BseGI GGATG 6 cut(s) 106, 558, 577, 600, 753, 869
BseLI CCNNNNNNNGG 6 cut(s) 30, 248, 265, 1491, 1714, 1852
BseMI GCAATG 1 cut(s) 1768
BseRI GAGGAG 3 cut(s) 322, 1787, 1893
BseXI GCAGC 2 cut(s) 1134, 1553
BsgI GTGCAG 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 2 cut(s) 189, 1083
BsiHKAI GWGCWC 1 cut(s) 1270
BsiHKCI CYCGRG 2 cut(s) 610, 1380
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 1564
BslI CCNNNNNNNGG 6 cut(s) 30, 248, 265, 1491, 1714, 1852
BsmAI GTCTC 2 cut(s) 345, 1606
BsmFI GGGAC 1 cut(s) 1564
BsmI GAATGC 1 cut(s) 1687
BsnI GGCC 2 cut(s) 189, 1083
Bso31I GGTCTC 1 cut(s) 1606
BsoBI CYCGRG 2 cut(s) 610, 1380
Bsp119I TTCGAA 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 1270
Bsp13I TCCGGA 1 cut(s) 248
Bsp143I GATC 8 cut(s) 304, 942, 1256, 1386, 1479, 1723, 1744, 1840
BspACI CCGC 6 cut(s) 129, 186, 295, 353, 404, 1089
BspANI GGCC 2 cut(s) 189, 1083
BspEI TCCGGA 1 cut(s) 248
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 2 cut(s) 708, 921
BspMI ACCTGC 1 cut(s) 9
BspPI GGATC 3 cut(s) 299, 1264, 1394
BspT104I TTCGAA 1 cut(s) 446
BspTI CTTAAG 1 cut(s) 1339
BspTNI GGTCTC 1 cut(s) 1606
BsrDI GCAATG 1 cut(s) 1768
BssECI CCNNGG 3 cut(s) 757, 883, 1084
BssMI GATC 8 cut(s) 304, 942, 1256, 1386, 1479, 1723, 1744, 1840
BssNAI GTATAC 1 cut(s) 201
BssSI CACGAG 1 cut(s) 804
BssT1I CCWWGG 1 cut(s) 1084
Bst1107I GTATAC 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 804
Bst2UI CCWGG 4 cut(s) 266, 309, 759, 1938
Bst4CI ACNGT 4 cut(s) 116, 229, 424, 1097
BstAFI CTTAAG 1 cut(s) 1339
BstBI TTCGAA 1 cut(s) 446
BstC8I GCNNGC 3 cut(s) 1157, 1266, 1497
BstF5I GGATG 6 cut(s) 106, 558, 577, 600, 753, 869
BstFNI CGCG 1 cut(s) 605
BstH2I RGCGCY 1 cut(s) 662
BstHHI GCGC 2 cut(s) 607, 661
BstKTI GATC 8 cut(s) 307, 945, 1259, 1389, 1482, 1726, 1747, 1843
BstMAI GTCTC 2 cut(s) 345, 1606
BstMBI GATC 8 cut(s) 304, 942, 1256, 1386, 1479, 1723, 1744, 1840
BstNI CCWGG 4 cut(s) 266, 309, 759, 1938
BstNSI RCATGY 1 cut(s) 1417
BstPAI GACNNNNGTC 1 cut(s) 967
BstSCI CCNGG 4 cut(s) 264, 307, 757, 1936
BstSFI CTRYAG 3 cut(s) 228, 946, 1621
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 2 cut(s) 1134, 1553
BstV2I GAAGAC 2 cut(s) 305, 967
BstX2I RGATCY 2 cut(s) 304, 1479
BstYI RGATCY 2 cut(s) 304, 1479
BstZ17I GTATAC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 1343
BsuRI GGCC 2 cut(s) 189, 1083
BtsCI GGATG 6 cut(s) 106, 558, 577, 600, 753, 869
BtsI GCAGTG 3 cut(s) 181, 477, 589
BtsIMutI CAGTG 3 cut(s) 181, 477, 589
BveI ACCTGC 1 cut(s) 9
Cac8I GCNNGC 3 cut(s) 1157, 1266, 1497
CfoI GCGC 2 cut(s) 607, 661
Cfr13I GGNCC 4 cut(s) 21, 173, 707, 1081
Csp6I GTAC 3 cut(s) 108, 117, 1030
CviAII CATG 9 cut(s) 260, 337, 389, 486, 664, 1018, 1217, 1285, 1414
CviQI GTAC 3 cut(s) 108, 117, 1030
DpnI GATC 8 cut(s) 306, 944, 1258, 1388, 1481, 1725, 1746, 1842
DpnII GATC 8 cut(s) 304, 942, 1256, 1386, 1479, 1723, 1744, 1840
DraI TTTAAA 1 cut(s) 1108
EaeI YGGCCR 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 1268
Eco130I CCWWGG 1 cut(s) 1084
Eco24I GRGCYC 1 cut(s) 1270
Eco31I GGTCTC 1 cut(s) 1606
Eco32I GATATC 2 cut(s) 849, 1435
Eco47I GGWCC 3 cut(s) 21, 173, 707
Eco53kI GAGCTC 1 cut(s) 1268
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 2 cut(s) 610, 1380
EcoICRI GAGCTC 1 cut(s) 1268
EcoO109I RGGNCCY 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 4 cut(s) 264, 307, 757, 1936
EcoRV GATATC 2 cut(s) 849, 1435
EcoT14I CCWWGG 1 cut(s) 1084
EcoT38I GRGCYC 1 cut(s) 1270
ErhI CCWWGG 1 cut(s) 1084
FaeI CATG 9 cut(s) 263, 340, 392, 489, 667, 1021, 1220, 1288, 1417
FalI AAGNNNNNCTT 6 cut(s) 139, 171, 490, 522, 1018, 1050
FaqI GGGAC 1 cut(s) 1564
FatI CATG 9 cut(s) 259, 336, 388, 485, 663, 1017, 1216, 1284, 1413
FblI GTMKAC 4 cut(s) 200, 234, 371, 1515
Fnu4HI GCNGC 3 cut(s) 187, 1123, 1542
FokI GGATG 6 cut(s) 113, 565, 584, 607, 740, 876
FriOI GRGCYC 1 cut(s) 1270
Fsp4HI GCNGC 3 cut(s) 187, 1123, 1542
FspBI CTAG 3 cut(s) 1185, 1271, 2007
GlaI GCGC 2 cut(s) 606, 660
GluI GCNGC 3 cut(s) 187, 1123, 1542
GsuI CTGGAG 2 cut(s) 1554, 1959
HaeII RGCGCY 1 cut(s) 662
HaeIII GGCC 2 cut(s) 189, 1083
HapII CCGG 1 cut(s) 249
HhaI GCGC 2 cut(s) 607, 661
Hin1II CATG 9 cut(s) 263, 340, 392, 489, 667, 1021, 1220, 1288, 1417
Hin6I GCGC 2 cut(s) 605, 659
HinP1I GCGC 2 cut(s) 605, 659
HindIII AAGCTT 1 cut(s) 811
HinfI GANTC 5 cut(s) 407, 448, 1210, 1677, 1941
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 1205
Hpy166II GTNNAC 5 cut(s) 201, 235, 372, 475, 1516
Hpy188I TCNGA 4 cut(s) 318, 942, 1042, 1486
Hpy188III TCNNGA 6 cut(s) 249, 342, 610, 1301, 1457, 1571
Hpy8I GTNNAC 5 cut(s) 201, 235, 372, 475, 1516
HpyAV CCTTC 9 cut(s) 34, 130, 252, 862, 1200, 1247, 1319, 1653, 1857
HpyCH4III ACNGT 4 cut(s) 116, 229, 424, 1097
HpyCH4IV ACGT 8 cut(s) 192, 368, 527, 537, 618, 792, 1044, 1991
HpyCH4V TGCA 9 cut(s) 497, 582, 587, 935, 1000, 1231, 1347, 1417, 1499
HpySE526I ACGT 8 cut(s) 192, 368, 527, 537, 618, 792, 1044, 1991
Hsp92II CATG 9 cut(s) 263, 340, 392, 489, 667, 1021, 1220, 1288, 1417
HspAI GCGC 2 cut(s) 605, 659
Kpn2I TCCGGA 1 cut(s) 248
Kzo9I GATC 8 cut(s) 304, 942, 1256, 1386, 1479, 1723, 1744, 1840
LmnI GCTCC 3 cut(s) 335, 487, 1573
Lsp1109I GCAGC 2 cut(s) 1134, 1553
LweI GCATC 4 cut(s) 306, 484, 762, 990
MaeI CTAG 3 cut(s) 1185, 1271, 2007
MaeII ACGT 8 cut(s) 192, 368, 527, 537, 618, 792, 1044, 1991
MaeIII GTNAC 5 cut(s) 1091, 1116, 1409, 1528, 1765
MalI GATC 8 cut(s) 306, 944, 1258, 1388, 1481, 1725, 1746, 1842
MboI GATC 8 cut(s) 304, 942, 1256, 1386, 1479, 1723, 1744, 1840
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 2 cut(s) 304, 1479
MhlI GDGCHC 1 cut(s) 1270
MlyI GAGTC 1 cut(s) 1950
MmeI TCCRAC 1 cut(s) 530
MroI TCCGGA 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 993
MslI CAYNNNNRTG 2 cut(s) 1221, 1868
MspA1I CMGCKG 1 cut(s) 404
MspCI CTTAAG 1 cut(s) 1339
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 4 cut(s) 266, 309, 759, 1938
MunI CAATTG 1 cut(s) 325
Mva1269I GAATGC 1 cut(s) 1687
MvaI CCWGG 4 cut(s) 266, 309, 759, 1938
MvnI CGCG 1 cut(s) 605
NdeII GATC 8 cut(s) 304, 942, 1256, 1386, 1479, 1723, 1744, 1840
NlaIII CATG 9 cut(s) 263, 340, 392, 489, 667, 1021, 1220, 1288, 1417
NlaIV GGNNCC 2 cut(s) 708, 921
NmuCI GTSAC 1 cut(s) 1409
NspI RCATGY 1 cut(s) 1417
NspV TTCGAA 1 cut(s) 446
PaeR7I CTCGAG 2 cut(s) 610, 1380
PcsI WCGNNNNNNNCGW 1 cut(s) 1126
PctI GAATGC 1 cut(s) 1687
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 4 cut(s) 407, 448, 1210, 1677
PflFI GACNNNGTC 1 cut(s) 1859
PkrI GCNGC 3 cut(s) 188, 1124, 1543
PleI GAGTC 1 cut(s) 1949
PpsI GAGTC 1 cut(s) 1949
PpuMI RGGWCCY 1 cut(s) 21
PshAI GACNNNNGTC 1 cut(s) 967
PshBI ATTAAT 1 cut(s) 729
Psp124BI GAGCTC 1 cut(s) 1270
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 4 cut(s) 264, 307, 757, 1936
PspGI CCWGG 4 cut(s) 264, 307, 757, 1936
PspN4I GGNNCC 2 cut(s) 708, 921
PspPI GGNCC 4 cut(s) 21, 173, 707, 1081
PspPPI RGGWCCY 1 cut(s) 21
PspXI VCTCGAGB 1 cut(s) 1380
PsuI RGATCY 2 cut(s) 304, 1479
PsyI GACNNNGTC 1 cut(s) 1859
RsaI GTAC 3 cut(s) 109, 118, 1031
RsaNI GTAC 3 cut(s) 108, 117, 1030
RseI CAYNNNNRTG 2 cut(s) 1221, 1868
SacI GAGCTC 1 cut(s) 1270
SatI GCNGC 3 cut(s) 187, 1123, 1542
Sau3AI GATC 8 cut(s) 304, 942, 1256, 1386, 1479, 1723, 1744, 1840
Sau96I GGNCC 4 cut(s) 21, 173, 707, 1081
SchI GAGTC 1 cut(s) 1950
ScrFI CCNGG 4 cut(s) 266, 309, 759, 1938
SduI GDGCHC 1 cut(s) 1270
SfaNI GCATC 4 cut(s) 306, 484, 762, 990
SfcI CTRYAG 3 cut(s) 228, 946, 1621
Sfr274I CTCGAG 2 cut(s) 610, 1380
SfuI TTCGAA 1 cut(s) 446
SinI GGWCC 3 cut(s) 21, 173, 707
SlaI CTCGAG 2 cut(s) 610, 1380
SmiMI CAYNNNNRTG 2 cut(s) 1221, 1868
SmlI CTYRAG 3 cut(s) 610, 1339, 1380
SmoI CTYRAG 3 cut(s) 610, 1339, 1380
SpeI ACTAGT 1 cut(s) 1184
SsiI CCGC 6 cut(s) 129, 186, 295, 353, 404, 1089
SspI AATATT 2 cut(s) 136, 1591
SspMI CTAG 3 cut(s) 1185, 1271, 2007
SstI GAGCTC 1 cut(s) 1270
StyD4I CCNGG 4 cut(s) 264, 307, 757, 1936
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 4 cut(s) 116, 229, 424, 1097
TaiI ACGT 8 cut(s) 195, 371, 530, 540, 621, 795, 1047, 1994
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 4 cut(s) 407, 448, 1210, 1677
TscAI CASTG 3 cut(s) 188, 484, 589
TseFI GTSAC 1 cut(s) 1409
TseI GCWGC 2 cut(s) 1122, 1541
Tsp45I GTSAC 1 cut(s) 1409
TspDTI ATGAA 7 cut(s) 377, 470, 657, 714, 1006, 1273, 1844
TspRI CASTG 3 cut(s) 188, 484, 589
Tth111I GACNNNGTC 1 cut(s) 1859
Vha464I CTTAAG 1 cut(s) 1339
VpaK11BI GGWCC 3 cut(s) 21, 173, 707
VspI ATTAAT 1 cut(s) 729
XapI RAATTY 5 cut(s) 346, 457, 1064, 1419, 1666
XceI RCATGY 1 cut(s) 1417
XcmI CCANNNNNNNNNTGG 1 cut(s) 717
XhoI CTCGAG 2 cut(s) 610, 1380
XmiI GTMKAC 4 cut(s) 200, 234, 371, 1515
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 3 cut(s) 1185, 1271, 2007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.