MD12G1250700.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
32075971 .. 32078577
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1250700.v1.1.491

Sequence Viewer

Length: 2154 bp
ATGAGTTTTCCCTCTTTTTCTTCCTCCTCAATTCCGTTCATCTTATCGCTTCCTACAATGCTGAGAAGAATCCGGTTACTAGCATGTGTTATAGCTATCAGCTTTGTAGTGTGCCATGATGCTAAGGAAGAAGGAAACTGTCGGAGGCATGCTTCATGTGGAGATCTTCTAGACATTCAATACCCTTTTCGCCTGAGAACCGGTTCTGAAGTTAATTGCCCCGGCTATCCAGCTGAGCTATCGTGCGACCATAACCGCACCACCTTAAATCTCTTCAATGCTACATATTATGTCAAAGCGCCAATCAACTATGAGCATCATACAATCCATGTTGTGGATCCTGGTTTGCTAAACGATTCTTGCCCTTTCAGGCCTCTCAACTGGCTAACAAGCGAGAACTTTAGCCAAATTCCATATAGCTATTATTACGTTGATTACCGTTATCTATCCTTCTTCGATTGCTTGTTACCAGTTGAGTCTCCGGATTATGTAGAACTGAACTGCAGTAATACTAACTCATCATCTGCCACAACATCACATTCTTATATTTTGGTGAAAGATGGGGTGAACAATCTTCAACCCTCTTGTACTCTGACCGGAGTCGTTATGGCTTCTGATATTATCCCAGAAGATGGAAGTGGCCTTTCAGTTTCTTTCATCCGTGATCTTTTAATAAATGGTATGGAGCTTTCGTGGGGTGGAATTCTCCCCCACAACTACTGCGACACCCGATACCAATCCCTCTACTGTGAGTATGGTTGCATCAGTTTGGCGAACAGATGTTTTCTGATGGCGCGGATGATACTCGGCGTTGTTGTTTTGTTGGGTTTCTGTTGCTACAAACTGTACTGGAAAAAGTTCCCCAAGCATGAAGCAGTTGAAGAATACTTGCTTGCTTGCAAGAATCGAATAACAAGGTACTCGTATTCGGATATTAAGAAAATGACGATTGAGTTAAAAAATAAAGTCAGACAAAAGGGCTTCTGGAAAAAGTTCCTGAACGATGCAGTTCAAAAGTTATTGGATGCATGCAAGAATGTTAAGAGAAGAAAGTACTTTTATTCAGACGTCAAGATGATTGTAGTTTCTTTGAAACAACGGAGTCAAGGAGTGTATTCGAAAAAATTCCGAAAGGATGATGCAGTTGAAGAATTCTTGGATGCATACAAGAATCTTATGCCGAGAAGGTATTCGTATTCAGATATTAAGAAGATTACAATCGATTTCAAAGATAAACTCGGTCAGGGGGGCTTTGGTTCCGTCTTCAAAGGAGAGCTTTCGGGTGGTCATCTTGTTGCAGTCAAGATGTTGAGTGGCTCCAAAGGTGAAGGGCTAGATTTCATCAGTGAAGTTGCCACAATTGGAAGAATTCATCATGTCAATGTGGTGCAACTAATTGGATTTTGTTCTGAGAGATCCAAAAGAGCTCTTGTTTACGACTTCATGCCTAATGGTTCCCTCGAAAAACATATATTTTCGGAGAAGGAAACAGGCGTTGTTCTTGGTTGGGATAGAATGCATGAGATAGCTCTTGGGGTGGCTCGTGCGATCGAATATCTGCACCAGGGATGTGATATGCAAATCCTGCACTTCGACATCAAACCTCACAACATTCTTCTTGACGGAAACTACACTGCTAAAATTTCCGACTTTGGTCTTGCGAGATTTTACCCTAGAGATCATAACACTCTTTCTCTTACTGCTCCAAGAGGCACGATGGGATACATAGCTCCAGAAATGTTCTACAGAATCCTCGGAAGCGTTTCGTACAAAGCTGATGTTTATAGCTTCGGAATGCTGCTAATGGAAATGACCGGTCGGAGGAAGAACTTGAATGCACATGCACAAAATTCAAGCCAAATATACTTCCCTTCCTGGATTTATGATCAACTGGACAAAGGATTGAGTGTTGAAATTGTGGATGCCTGTGAGAACGATAAGAAAATAGCCAAGAAGATGATCATGGTTGCGTTGTGGTGCATACAATTGAAGCCGGCGGATCGCCCTTCCATGAGCAAAGTCGTAGAGATGCTTGAAGGGGAAGTCGAAGCCCTACAGATGCCTCCGAAACCTTTCTTCTGTCCCCAACAGATGCCGATGGAGGATCCGCATGGTGGCACGGACAGTGAAGAGGAAACGATCTCCATGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

718

Amino Acids

81.59

Weight (kDa)

8.05

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 47 - 113 3.7e-12 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 408 - 678 1e-41 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 409 - 676 5.6e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66910 AT1G66910 AT1G66920 AT1G66920 AT1G66920 AT1G66930 AT1G66930 AT1G66930 AT1G67000 AT1G70250 AT4G18250 AT5G38240 AT5G38240 AT5G38240 AT5G38250 AT5G38260 AT5G38280 AT5G38280
fragaria_vesca FvH4_1g03330 FvH4_4g26890 FvH4_4g26891 FvH4_4g26892 FvH4_4g26892 FvH4_4g26892 FvH4_4g26893 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26940 FvH4_4g26950 FvH4_4g26961 FvH4_4g26961 FvH4_4g34450 FvH4_4g34450 FvH4_4g34450 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g11780 FvH4_5g22251 FvH4_6g01490 FvH4_6g01490 FvH4_6g01490 FvH4_6g01502 FvH4_6g23830 FvH4_6g28430 FvH4_6g28450 FvH4_6g47250 FvH4_6g52670 FvH4_7g04150 FvH4_7g04150 FvH4_7g04160 FvH4_7g04170 FvH4_7g05990 FvH4_7g06001 FvH4_7g06010 FvH4_7g06010 FvH4_7g06060 FvH4_7g20630 FvH4_7g20630
malus_domestica MD01G1059700.v1.1 MD02G1233600.v1.1 MD02G1234400.v1.1 MD02G1234900.v1.1 MD02G1235600.v1.1 MD02G1245700.v1.1 MD02G1245800.v1.1 MD02G1246200.v1.1 MD02G1246300.v1.1 MD02G1246700.v1.1 MD02G1246800.v1.1 MD02G1247100.v1.1 MD02G1247300.v1.1 MD02G1247400.v1.1 MD02G1249300.v1.1 MD02G1249500.v1.1 MD02G1249700.v1.1 MD02G1250000.v1.1 MD02G1250200.v1.1 MD02G1250800.v1.1 MD02G1251800.v1.1 MD02G1252600.v1.1 MD02G1253600.v1.1 MD02G1273500.v1.1 MD02G1274000.v1.1 MD02G1274500.v1.1 MD04G1233100.v1.1 MD06G1136000.v1.1 MD06G1136200.v1.1 MD06G1136300.v1.1 MD06G1218300.v1.1 MD06G1218500.v1.1 MD06G1218600.v1.1 MD06G1219100.v1.1 MD07G1070000.v1.1 MD07G1070400.v1.1 MD07G1070700.v1.1 MD07G1071000.v1.1 MD07G1071100.v1.1 MD07G1137900.v1.1 MD07G1138000.v1.1 MD09G1255100.v1.1 MD12G1250700.v1.1 MD12G1251100.v1.1 MD12G1251500.v1.1 MD13G1036700.v1.1 MD13G1037900.v1.1 MD13G1038000.v1.1 MD16G1037900.v1.1 MD16G1038000.v1.1 MD16G1038600.v1.1 MD16G1038700.v1.1 MD16G1039200.v1.1 MD16G1039300.v1.1 MD16G1039500.v1.1
prunus_persica Prupe.1G315000_v2.0.a1 Prupe.1G315000_v2.0.a1 Prupe.1G315100_v2.0.a1 Prupe.1G315300_v2.0.a1 Prupe.1G315400_v2.0.a1 Prupe.1G496900_v2.0.a1 Prupe.2G033400_v2.0.a1 Prupe.2G047500_v2.0.a1 Prupe.2G048700_v2.0.a1 Prupe.2G067100_v2.0.a1 Prupe.2G087100_v2.0.a1 Prupe.2G087500_v2.0.a1 Prupe.2G087800_v2.0.a1 Prupe.2G088100_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088300_v2.0.a1 Prupe.2G088800_v2.0.a1 Prupe.2G092500_v2.0.a1 Prupe.2G092800_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093000_v2.0.a1 Prupe.2G093100_v2.0.a1 Prupe.2G093200_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093300_v2.0.a1 Prupe.2G093400_v2.0.a1 Prupe.2G093500_v2.0.a1 Prupe.2G093600_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G093700_v2.0.a1 Prupe.2G103300_v2.0.a1 Prupe.2G103900_v2.0.a1 Prupe.2G312200_v2.0.a1 Prupe.3G145200_v2.0.a1 Prupe.3G145600_v2.0.a1 Prupe.3G145700_v2.0.a1 Prupe.3G145800_v2.0.a1 Prupe.3G145900_v2.0.a1 Prupe.3G146000_v2.0.a1 Prupe.3G146100_v2.0.a1 Prupe.3G146200_v2.0.a1 Prupe.3G146600_v2.0.a1 Prupe.5G223800_v2.0.a1 Prupe.6G137800_v2.0.a1 Prupe.6G138000_v2.0.a1 Prupe.6G141600_v2.0.a1 Prupe.6G141900_v2.0.a1 Prupe.6G142000_v2.0.a1 Prupe.6G142100_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G142300_v2.0.a1 Prupe.6G352800_v2.0.a1 Prupe.6G352800_v2.0.a1
pyrus_communis pycom01g08840 pycom01g08860 pycom01g08920 pycom01g08960 pycom01g08990 pycom01g09000 pycom02g20230 pycom02g21120 pycom02g21140 pycom02g21350 pycom02g21360 pycom02g21400 pycom02g21510 pycom02g23440 pycom02g23450 pycom02g23480 pycom02g23490 pycom04g20650 pycom04g20690 pycom04g20710 pycom04g20730 pycom06g12760 pycom06g19500 pycom06g19510 pycom06g19530 pycom06g19540 pycom06g19570 pycom12g23070 pycom12g23080 pycom12g23100 pycom13g03140 pycom13g03250 pycom13g03290 pycom13g03300 pycom14g19010 pycom16g03300 pycom16g03320 pycom16g03370 pycom16g03380 pycom16g03400 pycom17g24970 pycom17g25020 pycom17g25150 pycom17g25180 pycom17g25240 pycom17g25250
rosa_chinensis RchiOBHm_Chr1g0325081 RchiOBHm_Chr1g0325091 RchiOBHm_Chr1g0325111 RchiOBHm_Chr1g0325131 RchiOBHm_Chr1g0328221 RchiOBHm_Chr1g0328241 RchiOBHm_Chr1g0328281 RchiOBHm_Chr1g0328331 RchiOBHm_Chr1g0328371 RchiOBHm_Chr1g0328401 RchiOBHm_Chr1g0328481 RchiOBHm_Chr1g0328501 RchiOBHm_Chr1g0328591 RchiOBHm_Chr1g0328601 RchiOBHm_Chr1g0328751 RchiOBHm_Chr1g0329621 RchiOBHm_Chr1g0329631 RchiOBHm_Chr1g0333261 RchiOBHm_Chr1g0333291 RchiOBHm_Chr1g0333331 RchiOBHm_Chr1g0333351 RchiOBHm_Chr1g0333441 RchiOBHm_Chr1g0333481 RchiOBHm_Chr1g0333571 RchiOBHm_Chr1g0333611 RchiOBHm_Chr1g0334191 RchiOBHm_Chr1g0334281 RchiOBHm_Chr1g0334791 RchiOBHm_Chr1g0334801 RchiOBHm_Chr1g0334831 RchiOBHm_Chr1g0334841 RchiOBHm_Chr1g0384001 RchiOBHm_Chr2g0138701 RchiOBHm_Chr2g0166291 RchiOBHm_Chr2g0166311 RchiOBHm_Chr2g0166321 RchiOBHm_Chr3g0449131 RchiOBHm_Chr3g0449161 RchiOBHm_Chr3g0449331 RchiOBHm_Chr3g0449361 RchiOBHm_Chr3g0449381 RchiOBHm_Chr3g0482511 RchiOBHm_Chr3g0482521 RchiOBHm_Chr3g0482701 RchiOBHm_Chr4g0405811 RchiOBHm_Chr4g0434521 RchiOBHm_Chr4g0434661 RchiOBHm_Chr4g0434681 RchiOBHm_Chr4g0434701 RchiOBHm_Chr4g0434711 RchiOBHm_Chr5g0047441 RchiOBHm_Chr5g0047581 RchiOBHm_Chr5g0047621 RchiOBHm_Chr5g0047671 RchiOBHm_Chr5g0047761 RchiOBHm_Chr5g0047851 RchiOBHm_Chr5g0047981 RchiOBHm_Chr5g0048071 RchiOBHm_Chr5g0059221 RchiOBHm_Chr5g0059231 RchiOBHm_Chr5g0078441 RchiOBHm_Chr6g0264171 RchiOBHm_Chr6g0264401 RchiOBHm_Chr6g0264411 RchiOBHm_Chr6g0273031 RchiOBHm_Chr6g0283331 RchiOBHm_Chr7g0185621 RchiOBHm_Chr7g0185831 RchiOBHm_Chr7g0185841 RchiOBHm_Chr7g0185851 RchiOBHm_Chr7g0185861 RchiOBHm_Chr7g0185871 RchiOBHm_Chr7g0185881 RchiOBHm_Chr7g0185901 RchiOBHm_Chr7g0185911 RchiOBHm_Chr7g0185931 RchiOBHm_Chr7g0185951 RchiOBHm_Chr7g0185991 RchiOBHm_Chr7g0186011 RchiOBHm_Chr7g0201241 RchiOBHm_Chr7g0209921
rosa_laevigata RLG00000004874 RLG00000004876 RLG00000004878 RLG00000004879 RLG00000004880 RLG00000004881 RLG00000006656 RLG00000006657 RLG00000006659 RLG00000006666 RLG00000008822 RLG00000008823 RLG00000014282 RLG00000019268 RLG00000020174 RLG00000021604 RLG00000021605 RLG00000021606 RLG00000023348 RLG00000024362 RLG00000025836 RLG00000025838 RLG00000025848 RLG00000025849 RLG00000025850 RLG00000029421 RLG00000029464 RLG00000029467 RLG00000029469 RLG00000029470 RLG00000029471 RLG00000029547 RLG00000029552 RLG00000029603 RLG00000029604 RLG00000029612 RLG00000029613 RLG00000029617 RLG00000029920 RLG00000029923 RLG00000029924 RLG00000029927 RLG00000029930 RLG00000029933 RLG00000029941 RLG00000030158 RLG00000030159 RLG00000034494 RLG00000035280 RLG00000035281
rosa_multiflora Rmu_co8033562.1_g000001 Rmu_co8168632.1_g000001 Rmu_co8248815.1_g000001 Rmu_co8346553.1_g000001 Rmu_co8352941.1_g000001 Rmu_co8372625.1_g000001 Rmu_co8486819.1_g000001 Rmu_sc0000148.1_g000013 Rmu_sc0000148.1_g000033 Rmu_sc0000148.1_g000045 Rmu_sc0000148.1_g000075 Rmu_sc0000194.1_g000011 Rmu_sc0000194.1_g000015 Rmu_sc0000194.1_g000018 Rmu_sc0000215.1_g000021 Rmu_sc0000494.1_g000001 Rmu_sc0000494.1_g000016 Rmu_sc0000574.1_g000038 Rmu_sc0000574.1_g000040 Rmu_sc0000580.1_g000027 Rmu_sc0000580.1_g000029 Rmu_sc0000725.1_g000001 Rmu_sc0000725.1_g000002 Rmu_sc0000725.1_g000005 Rmu_sc0000725.1_g000019 Rmu_sc0000895.1_g000001 Rmu_sc0000982.1_g000004 Rmu_sc0000982.1_g000034 Rmu_sc0000982.1_g000035 Rmu_sc0000982.1_g000087 Rmu_sc0000982.1_g000107 Rmu_sc0001009.1_g000033 Rmu_sc0001009.1_g000036 Rmu_sc0001129.1_g000001 Rmu_sc0001200.1_g000018 Rmu_sc0001234.1_g000006 Rmu_sc0001349.1_g000008 Rmu_sc0001563.1_g000027 Rmu_sc0001563.1_g000028 Rmu_sc0001563.1_g000038 Rmu_sc0001563.1_g000046 Rmu_sc0001654.1_g000006 Rmu_sc0001654.1_g000007 Rmu_sc0001829.1_g000005 Rmu_sc0002107.1_g000004 Rmu_sc0002107.1_g000007 Rmu_sc0002107.1_g000008 Rmu_sc0002548.1_g000036 Rmu_sc0002955.1_g000013 Rmu_sc0002955.1_g000029 Rmu_sc0002965.1_g000002 Rmu_sc0002965.1_g000003 Rmu_sc0002965.1_g000017 Rmu_sc0002965.1_g000027 Rmu_sc0002965.1_g000028 Rmu_sc0002969.1_g000010 Rmu_sc0002983.1_g000033 Rmu_sc0003166.1_g000001 Rmu_sc0003441.1_g000001 Rmu_sc0003441.1_g000010 Rmu_sc0003441.1_g000011 Rmu_sc0003776.1_g000034 Rmu_sc0003776.1_g000035 Rmu_sc0004178.1_g000005 Rmu_sc0004241.1_g000010 Rmu_sc0004356.1_g000003 Rmu_sc0004470.1_g000014 Rmu_sc0004470.1_g000018 Rmu_sc0004538.1_g000009 Rmu_sc0004646.1_g000041 Rmu_sc0004736.1_g000001 Rmu_sc0004736.1_g000016 Rmu_sc0004736.1_g000020 Rmu_sc0004753.1_g000001 Rmu_sc0004753.1_g000012 Rmu_sc0004805.1_g000025 Rmu_sc0004874.1_g000010 Rmu_sc0005613.1_g000002 Rmu_sc0005665.1_g000006 Rmu_sc0005665.1_g000022 Rmu_sc0005665.1_g000024 Rmu_sc0005665.1_g000030 Rmu_sc0005665.1_g000032 Rmu_sc0005665.1_g000034 Rmu_sc0005665.1_g000036 Rmu_sc0005665.1_g000037 Rmu_sc0005665.1_g000039 Rmu_sc0005783.1_g000007 Rmu_sc0005899.1_g000014 Rmu_sc0006031.1_g000005 Rmu_sc0006031.1_g000008 Rmu_sc0006661.1_g000006 Rmu_sc0006959.1_g000006 Rmu_sc0006959.1_g000008 Rmu_sc0006959.1_g000013 Rmu_sc0007214.1_g000004 Rmu_sc0007477.1_g000006 Rmu_sc0007681.1_g000001 Rmu_sc0007681.1_g000005 Rmu_sc0008439.1_g000002 Rmu_sc0008439.1_g000006 Rmu_sc0009205.1_g000009 Rmu_sc0009205.1_g000024 Rmu_sc0009869.1_g000001 Rmu_sc0009881.1_g000003 Rmu_sc0013038.1_g000007 Rmu_sc0013038.1_g000010 Rmu_sc0016170.1_g000010 Rmu_sc0016170.1_g000016 Rmu_sc0016751.1_g000005 Rmu_sc0017361.1_g000001 Rmu_sc0021068.1_g000001 Rmu_sc0021282.1_g000001 Rmu_sc0024214.1_g000002 Rmu_sc0025695.1_g000001 Rmu_sc0028145.1_g000002 Rmu_sc0036877.1_g000001 Rmu_sc0038968.1_g000001 Rmu_ssc0000047.1_g000006 Rmu_ssc0000047.1_g000007 Rmu_ssc0000388.1_g000041
rosa_roxburghii Rroxscaffold_176G00431510 Rroxscaffold_176G00431520 Rroxscaffold_1G00021210 Rroxscaffold_1G00033850 Rroxscaffold_1G00033940 Rroxscaffold_2G00085010 Rroxscaffold_3G00227760 Rroxscaffold_3G00248800 Rroxscaffold_3G00268520 Rroxscaffold_3G00268550 Rroxscaffold_3G00268590 Rroxscaffold_3G00268600 Rroxscaffold_4G00316560 Rroxscaffold_4G00316920 Rroxscaffold_4G00316930 Rroxscaffold_4G00317380 Rroxscaffold_4G00317420 Rroxscaffold_4G00317550 Rroxscaffold_4G00317560 Rroxscaffold_4G00317640 Rroxscaffold_4G00317660 Rroxscaffold_4G00320870 Rroxscaffold_4G00320880 Rroxscaffold_4G00321480 Rroxscaffold_4G00321690 Rroxscaffold_4G00321890 Rroxscaffold_5G00350290 Rroxscaffold_5G00375840 Rroxscaffold_5G00375890 Rroxscaffold_5G00375910 Rroxscaffold_5G00375920 Rroxscaffold_6G00398920 Rroxscaffold_6G00399010 Rroxscaffold_6G00399320 Rroxscaffold_6G00415790 Rroxscaffold_6G00427220 Rroxscaffold_6G00427340 Rroxscaffold_7G00203530
rosa_rugosa Rorug01G0049600 Rorug01G0073600.1 Rorug01G0074600 Rorug01G0074900 Rorug01G0075000 Rorug01G0075100 Rorug01G0075400 Rorug01G0081300 Rorug01G0081400 Rorug01G0103400 Rorug01G0103500 Rorug01G0108300 Rorug01G0108400 Rorug01G0108600 Rorug01G0108700 Rorug01G0109300 Rorug01G0110000 Rorug01G0110600 Rorug01G0111900 Rorug01G0116400 Rorug01G0116500 Rorug01G0116900 Rorug01G0117000 Rorug02G0305700 Rorug02G0305900 Rorug02G0521800 Rorug02G0521900 Rorug02G0522000 Rorug02G0522000 Rorug02G0522100 Rorug02G0618100 Rorug02G0618200 Rorug02G0618500 Rorug02G0619900 Rorug02G0620000 Rorug02G0620100 Rorug02G0620200 Rorug03G0100200 Rorug03G0197900 Rorug04G0062400 Rorug04G0277100 Rorug04G0277500 Rorug04G0277500 Rorug04G0277600 Rorug04G0277600 Rorug04G0277700 Rorug05G0156000.1 Rorug05G0236300 Rorug05G0236300 Rorug05G0236300 Rorug05G0236500 Rorug05G0236600 Rorug06G0008000 Rorug06G0008100 Rorug06G0008400 Rorug06G0008500 Rorug06G0008600 Rorug06G0008700 Rorug06G0009400 Rorug06G0009500 Rorug06G0009600 Rorug06G0030300 Rorug06G0087000 Rorug06G0099800 Rorug06G0471600 Rorug06G0471600 Rorug06G0471700 Rorug07G0117400
rosa_samantha Rh1AG090600 Rh1AG092700 Rh1AG093100 Rh1AG093800 Rh1AG131300 Rh1AG131600 Rh1AG132000 Rh1AG133000 Rh1AG140900 Rh1AG165100 Rh1BG072500 Rh1BG074100 Rh1BG074300 Rh1BG074800 Rh1BG074900 Rh1BG100800 Rh1BG101000 Rh1BG101400 Rh1BG108200 Rh1CG095600 Rh1CG125200 Rh1CG125500 Rh1CG125800 Rh1CG132800 Rh1DG095200 Rh1DG095600 Rh1DG095700 Rh1DG096400 Rh1DG096900 Rh1DG097000 Rh1DG136700 Rh1DG137000 Rh1DG137200 Rh1DG137900 Rh1DG138200 Rh1DG138400 Rh1DG138800 Rh1DG139200 Rh1DG142400 Rh1DG145000 Rh2AG588100 Rh2BG460400 Rh2BG600100 Rh2CG571000 Rh2DG469800 Rh2DG610300 Rh3AG016800 Rh3AG249300 Rh3BG016900 Rh3BG017900 Rh3BG018000 Rh3CG016000 Rh3CG016900 Rh3CG017100 Rh3CG282700 Rh3DG017200 Rh3DG018200 Rh3DG018600 Rh3DG276000 Rh3DG278500 Rh4AG133800 Rh4AG332900 Rh4AG333100 Rh4AG334100 Rh4BG340600 Rh4BG340900 Rh4BG341800 Rh4CG355800 Rh4DG335900 Rh5CG351100 Rh5CG351300 Rh5CG351400 Rh5CG351700 Rh5CG351900 Rh5CG352200 Rh5CG421500 Rh6AG131900 Rh6AG265700 Rh6BG129100 Rh6CG124600 Rh6CG127100 Rh6CG267800 Rh6DG111300 Rh6DG114600 Rh7AG070800 Rh7AG251300 Rh7CG077200 Rh7CG077300 Rh7CG077500 Rh7CG268100 Rh7DG076900 Rh7DG077200 Rh7DG077300 Rh7DG077700 Rh7DG257700
rosa_wichuraiana Rw0G013150 Rw0G018000 Rw0G019300 Rw0G022850 Rw1G007090 Rw1G007130 Rw1G007160 Rw1G007210 Rw1G007770 Rw1G007850 Rw1G010720 Rw1G010780 Rw1G010860 Rw1G010890 Rw1G010900 Rw1G010950 Rw1G010960 Rw1G011020 Rw1G011060 Rw1G011100 Rw1G011420 Rw2G029200 Rw2G049010 Rw3G001260 Rw3G001370 Rw3G001400 Rw3G001430 Rw3G022340 Rw3G022510 Rw4G010890 Rw4G028850 Rw4G028930 Rw4G028950 Rw4G028970 Rw4G029040 Rw4G029060 Rw4G029080 Rw4G029100 Rw4G029110 Rw4G029120 Rw5G029450 Rw5G029480 Rw5G029570 Rw5G036350 Rw6G011290 Rw6G011310 Rw6G011530 Rw7G006420 Rw7G006430 Rw7G006460 Rw7G021320

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1071
AccB7I CCANNNNNTGG 2 cut(s) 334, 632
AccII CGCG 1 cut(s) 796
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 4 cut(s) 256, 796, 1997, 2108
AclWI GGATC 6 cut(s) 332, 345, 1410, 2007, 2099, 2112
AcsI RAATTY 7 cut(s) 408, 702, 1124, 1151, 1368, 1641, 1849
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 1068
AfaI GTAC 5 cut(s) 589, 848, 920, 1055, 1769
AfiI CCNNNNNNNGG 4 cut(s) 334, 632, 1821, 2114
AgeI ACCGGT 2 cut(s) 200, 1814
AjnI CCWGG 3 cut(s) 340, 1563, 1874
Alw21I GWGCWC 1 cut(s) 1429
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 6 cut(s) 332, 345, 1410, 2007, 2099, 2112
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 2 cut(s) 371, 640
ApeKI GCWGC 1 cut(s) 1798
ApoI RAATTY 7 cut(s) 408, 702, 1124, 1151, 1368, 1641, 1849
AsiGI ACCGGT 2 cut(s) 200, 1814
Asp700I GAANNNNTTC 7 cut(s) 202, 857, 992, 1124, 1189, 1762, 2072
AspLEI GCGC 2 cut(s) 301, 796
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 565, 577, 1337
AsuII TTCGAA 1 cut(s) 1118
BamHI GGATCC 2 cut(s) 337, 2104
BanII GRGCYC 1 cut(s) 1429
BauI CACGAG 1 cut(s) 1542
BbsI GAAGAC 1 cut(s) 1255
Bbv12I GWGCWC 1 cut(s) 1429
BbvI GCAGC 1 cut(s) 1785
BccI CCATC 5 cut(s) 554, 626, 784, 1711, 2092
BciT130I CCWGG 3 cut(s) 342, 1565, 1876
BciVI GTATCC 1 cut(s) 1715
BclI TGATCA 2 cut(s) 1885, 1959
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 4 cut(s) 80, 170, 1334, 1674
BfmI CTRYAG 3 cut(s) 502, 1744, 2054
BfoI RGCGCY 1 cut(s) 302
BfuI GTATCC 1 cut(s) 1715
BglII AGATCT 1 cut(s) 163
BisI GCNGC 1 cut(s) 1799
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 1800
BmcAI AGTACT 1 cut(s) 1055
Bme1390I CCNGG 4 cut(s) 222, 342, 1565, 1876
BmiI GGNNCC 5 cut(s) 339, 1258, 1318, 1456, 2106
BmrFI CCNGG 4 cut(s) 222, 342, 1565, 1876
BoxI GACNNNNGTC 2 cut(s) 599, 1653
BpiI GAAGAC 1 cut(s) 1255
BpmI CTGGAG 1 cut(s) 1716
Bpu10I CCTNAGC 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 1118
BpuMI CCSGG 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 1221
BsaBI GATNNNNATC 2 cut(s) 736, 1217
BsaHI GRCGYC 1 cut(s) 1068
BsaJI CCNNGG 4 cut(s) 220, 1564, 1753, 2145
BsaWI WCCGGW 5 cut(s) 72, 200, 481, 596, 1814
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 632, 1821, 2114
Bse118I RCCGGY 3 cut(s) 200, 1814, 1993
Bse1I ACTGG 4 cut(s) 386, 470, 854, 1896
Bse8I GATNNNNATC 2 cut(s) 736, 1217
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 3 cut(s) 342, 1565, 1876
BseCI ATCGAT 1 cut(s) 1221
BseDI CCNNGG 4 cut(s) 220, 1564, 1753, 2145
BseGI GGATG 7 cut(s) 657, 804, 1030, 1141, 1165, 1574, 1927
BseJI GATNNNNATC 2 cut(s) 736, 1217
BseLI CCNNNNNNNGG 4 cut(s) 334, 632, 1821, 2114
BseMII CTCAG 4 cut(s) 53, 185, 225, 1401
BseNI ACTGG 4 cut(s) 386, 470, 854, 1896
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 1785
BsgI GTGCAG 2 cut(s) 1544, 1571
Bsh1236I CGCG 1 cut(s) 796
Bsh1285I CGRYCG 2 cut(s) 1551, 1819
BshFI GGCC 2 cut(s) 373, 642
BshTI ACCGGT 2 cut(s) 200, 1814
BshVI ATCGAT 1 cut(s) 1221
BsiEI CGRYCG 2 cut(s) 1551, 1819
BsiHKAI GWGCWC 1 cut(s) 1429
BsiSI CCGG 7 cut(s) 73, 201, 222, 482, 597, 1815, 1994
BslFI GGGAC 1 cut(s) 2067
BslI CCNNNNNNNGG 4 cut(s) 334, 632, 1821, 2114
BsmAI GTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 2067
BsmI GAATGC 3 cut(s) 1521, 1800, 1840
BsnI GGCC 2 cut(s) 373, 642
Bsp119I TTCGAA 1 cut(s) 1118
Bsp1286I GDGCHC 1 cut(s) 1429
Bsp13I TCCGGA 1 cut(s) 481
Bsp1720I GCTNAGC 1 cut(s) 234
Bsp19I CCATGG 1 cut(s) 2145
BspACI CCGC 4 cut(s) 256, 796, 1997, 2108
BspANI GGCC 2 cut(s) 373, 642
BspCNI CTCAG 4 cut(s) 54, 186, 226, 1402
BspDI ATCGAT 1 cut(s) 1221
BspEI TCCGGA 1 cut(s) 481
BspFNI CGCG 1 cut(s) 796
BspLI GGNNCC 5 cut(s) 339, 1258, 1318, 1456, 2106
BspMAI CTGCAG 1 cut(s) 506
BspPI GGATC 6 cut(s) 332, 345, 1410, 2007, 2099, 2112
BspT104I TTCGAA 1 cut(s) 1118
BsrFI RCCGGY 3 cut(s) 200, 1814, 1993
BsrI ACTGG 4 cut(s) 386, 470, 854, 1896
BssAI RCCGGY 3 cut(s) 200, 1814, 1993
BssECI CCNNGG 4 cut(s) 220, 1564, 1753, 2145
BssNI GRCGYC 1 cut(s) 1068
BssSI CACGAG 1 cut(s) 1542
BssT1I CCWWGG 1 cut(s) 2145
Bst2BI CACGAG 1 cut(s) 1542
Bst2UI CCWGG 3 cut(s) 342, 1565, 1876
Bst4CI ACNGT 5 cut(s) 140, 440, 749, 846, 2126
Bst6I CTCTTC 2 cut(s) 278, 2124
BstACI GRCGYC 1 cut(s) 1068
BstAPI GCANNNNNTGC 1 cut(s) 1585
BstBI TTCGAA 1 cut(s) 1118
BstC8I GCNNGC 5 cut(s) 150, 894, 898, 1030, 1995
BstDEI CTNAG 5 cut(s) 62, 123, 194, 234, 1410
BstDSI CCRYGG 1 cut(s) 2145
BstF5I GGATG 7 cut(s) 657, 804, 1030, 1141, 1165, 1574, 1927
BstFNI CGCG 1 cut(s) 796
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 301, 796
BstMAI GTCTC 1 cut(s) 483
BstMCI CGRYCG 2 cut(s) 1551, 1819
BstMWI GCNNNNNNNGC 1 cut(s) 1585
BstNI CCWGG 3 cut(s) 342, 1565, 1876
BstNSI RCATGY 4 cut(s) 87, 152, 1032, 1844
BstPAI GACNNNNGTC 2 cut(s) 599, 1653
BstSCI CCNGG 4 cut(s) 220, 340, 1563, 1874
BstSFI CTRYAG 3 cut(s) 502, 1744, 2054
BstUI CGCG 1 cut(s) 796
BstV1I GCAGC 1 cut(s) 1785
BstV2I GAAGAC 1 cut(s) 1255
BstX2I RGATCY 4 cut(s) 163, 337, 1415, 2104
BstYI RGATCY 4 cut(s) 163, 337, 1415, 2104
Bsu15I ATCGAT 1 cut(s) 1221
BsuI GTATCC 1 cut(s) 1715
BsuRI GGCC 2 cut(s) 373, 642
BsuTUI ATCGAT 1 cut(s) 1221
BtgI CCRYGG 1 cut(s) 2145
BtsCI GGATG 7 cut(s) 657, 804, 1030, 1141, 1165, 1574, 1927
BtsI GCAGTG 1 cut(s) 1632
BtsIMutI CAGTG 3 cut(s) 1351, 1632, 2131
Cac8I GCNNGC 5 cut(s) 150, 894, 898, 1030, 1995
CfoI GCGC 2 cut(s) 301, 796
Cfr10I RCCGGY 3 cut(s) 200, 1814, 1993
ClaI ATCGAT 1 cut(s) 1221
Csp6I GTAC 5 cut(s) 588, 847, 919, 1054, 1768
CspAI ACCGGT 2 cut(s) 200, 1814
CviQI GTAC 5 cut(s) 588, 847, 919, 1054, 1768
DdeI CTNAG 5 cut(s) 62, 123, 194, 234, 1410
Eam1104I CTCTTC 2 cut(s) 278, 2124
EarI CTCTTC 2 cut(s) 278, 2124
EciI GGCGGA 1 cut(s) 2012
Ecl136II GAGCTC 1 cut(s) 1427
Eco130I CCWWGG 1 cut(s) 2145
Eco147I AGGCCT 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 1429
Eco53kI GAGCTC 1 cut(s) 1427
Eco57I CTGAAG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 1427
EcoRI GAATTC 3 cut(s) 702, 1151, 1368
EcoRII CCWGG 3 cut(s) 340, 1563, 1874
EcoT14I CCWWGG 1 cut(s) 2145
EcoT22I ATGCAT 3 cut(s) 1030, 1165, 1521
EcoT38I GRGCYC 1 cut(s) 1429
ErhI CCWWGG 1 cut(s) 2145
FalI AAGNNNNNCTT 2 cut(s) 1260, 1292
FaqI GGGAC 1 cut(s) 2067
FbaI TGATCA 2 cut(s) 1885, 1959
Fnu4HI GCNGC 1 cut(s) 1799
FokI GGATG 7 cut(s) 644, 811, 1037, 1148, 1172, 1581, 1934
FriOI GRGCYC 1 cut(s) 1429
Fsp4HI GCNGC 1 cut(s) 1799
FspBI CTAG 4 cut(s) 80, 170, 1334, 1674
GlaI GCGC 2 cut(s) 300, 795
GluI GCNGC 1 cut(s) 1799
GsuI CTGGAG 1 cut(s) 1716
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 2 cut(s) 373, 642
HapII CCGG 7 cut(s) 73, 201, 222, 482, 597, 1815, 1994
HhaI GCGC 2 cut(s) 301, 796
Hin1I GRCGYC 1 cut(s) 1068
Hin6I GCGC 2 cut(s) 299, 794
HinP1I GCGC 2 cut(s) 299, 794
HinfI GANTC 8 cut(s) 69, 356, 476, 600, 904, 1102, 1171, 1749
HpaII CCGG 7 cut(s) 73, 201, 222, 482, 597, 1815, 1994
HphI GGTGA 3 cut(s) 565, 577, 1337
Hpy166II GTNNAC 2 cut(s) 568, 1435
Hpy188III TCNNGA 8 cut(s) 170, 482, 985, 997, 1072, 1303, 1619, 1733
Hpy8I GTNNAC 2 cut(s) 568, 1435
HpyAV CCTTC 8 cut(s) 125, 460, 1179, 1322, 1477, 1881, 2016, 2030
HpyCH4III ACNGT 5 cut(s) 140, 440, 749, 846, 2126
HpyCH4IV ACGT 2 cut(s) 429, 1068
HpyF10VI GCNNNNNNNGC 1 cut(s) 1585
HpyF3I CTNAG 5 cut(s) 62, 123, 194, 234, 1410
HpySE526I ACGT 2 cut(s) 429, 1068
Hsp92I GRCGYC 1 cut(s) 1068
HspAI GCGC 2 cut(s) 299, 794
Kpn2I TCCGGA 1 cut(s) 481
KroI GCCGGC 1 cut(s) 1993
KroNI GCCGGC 1 cut(s) 1995
Ksp22I TGATCA 2 cut(s) 1885, 1959
LmnI GCTCC 4 cut(s) 685, 1322, 1708, 1735
Lsp1109I GCAGC 1 cut(s) 1785
MaeI CTAG 4 cut(s) 80, 170, 1334, 1674
MaeII ACGT 2 cut(s) 429, 1068
MaeIII GTNAC 2 cut(s) 75, 465
MfeI CAATTG 2 cut(s) 1359, 1985
MflI RGATCY 4 cut(s) 163, 337, 1415, 2104
MhlI GDGCHC 1 cut(s) 1429
MlyI GAGTC 3 cut(s) 485, 609, 1111
MmeI TCCRAC 3 cut(s) 122, 1671, 1799
Mph1103I ATGCAT 3 cut(s) 1030, 1165, 1521
MroI TCCGGA 1 cut(s) 481
MroNI GCCGGC 1 cut(s) 1993
MroXI GAANNNNTTC 7 cut(s) 202, 857, 992, 1124, 1189, 1762, 2072
MseI TTAA 7 cut(s) 213, 266, 671, 936, 956, 1041, 1206
MslI CAYNNNNRTG 1 cut(s) 1380
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 7 cut(s) 73, 201, 222, 482, 597, 1815, 1994
MspR9I CCNGG 4 cut(s) 222, 342, 1565, 1876
MunI CAATTG 2 cut(s) 1359, 1985
Mva1269I GAATGC 3 cut(s) 1521, 1800, 1840
MvaI CCWGG 3 cut(s) 342, 1565, 1876
MvnI CGCG 1 cut(s) 796
MwoI GCNNNNNNNGC 1 cut(s) 1585
NaeI GCCGGC 1 cut(s) 1995
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 2145
NgoMIV GCCGGC 1 cut(s) 1993
NlaIV GGNNCC 5 cut(s) 339, 1258, 1318, 1456, 2106
NmeAIII GCCGAG 2 cut(s) 786, 1206
NsiI ATGCAT 3 cut(s) 1030, 1165, 1521
NspI RCATGY 4 cut(s) 87, 152, 1032, 1844
NspV TTCGAA 1 cut(s) 1118
PaeI GCATGC 2 cut(s) 152, 1032
PceI AGGCCT 1 cut(s) 373
PctI GAATGC 3 cut(s) 1521, 1800, 1840
PdiI GCCGGC 1 cut(s) 1995
PdmI GAANNNNTTC 7 cut(s) 202, 857, 992, 1124, 1189, 1762, 2072
PfeI GAWTC 5 cut(s) 69, 356, 904, 1171, 1749
PflMI CCANNNNNTGG 2 cut(s) 334, 632
PfoI TCCNGGA 1 cut(s) 1874
PinAI ACCGGT 2 cut(s) 200, 1814
PkrI GCNGC 1 cut(s) 1800
Ple19I CGATCG 1 cut(s) 1551
PleI GAGTC 3 cut(s) 484, 608, 1110
PpsI GAGTC 3 cut(s) 484, 608, 1110
PshAI GACNNNNGTC 2 cut(s) 599, 1653
Psp124BI GAGCTC 1 cut(s) 1429
Psp6I CCWGG 3 cut(s) 340, 1563, 1874
PspGI CCWGG 3 cut(s) 340, 1563, 1874
PspN4I GGNNCC 5 cut(s) 339, 1258, 1318, 1456, 2106
PstI CTGCAG 1 cut(s) 506
PsuI RGATCY 4 cut(s) 163, 337, 1415, 2104
PvuI CGATCG 1 cut(s) 1551
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 5 cut(s) 589, 848, 920, 1055, 1769
RsaNI GTAC 5 cut(s) 588, 847, 919, 1054, 1768
RseI CAYNNNNRTG 1 cut(s) 1380
SacI GAGCTC 1 cut(s) 1429
SaqAI TTAA 7 cut(s) 213, 266, 671, 936, 956, 1041, 1206
SatI GCNGC 1 cut(s) 1799
ScaI AGTACT 1 cut(s) 1055
SchI GAGTC 3 cut(s) 485, 609, 1111
ScrFI CCNGG 4 cut(s) 222, 342, 1565, 1876
SduI GDGCHC 1 cut(s) 1429
SfcI CTRYAG 3 cut(s) 502, 1744, 2054
SfuI TTCGAA 1 cut(s) 1118
SmiMI CAYNNNNRTG 1 cut(s) 1380
SphI GCATGC 2 cut(s) 152, 1032
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 4 cut(s) 256, 796, 1997, 2108
SspMI CTAG 4 cut(s) 80, 170, 1334, 1674
SstI GAGCTC 1 cut(s) 1429
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 4 cut(s) 220, 340, 1563, 1874
StyI CCWWGG 1 cut(s) 2145
TaaI ACNGT 5 cut(s) 140, 440, 749, 846, 2126
TaiI ACGT 2 cut(s) 432, 1071
TaqI TCGA 8 cut(s) 456, 907, 1118, 1221, 1461, 1551, 1593, 2046
TaqII GACCGA 1 cut(s) 1229
TatI WGTACW 3 cut(s) 587, 846, 1053
TfiI GAWTC 5 cut(s) 69, 356, 904, 1171, 1749
Tru1I TTAA 7 cut(s) 213, 266, 671, 936, 956, 1041, 1206
Tru9I TTAA 7 cut(s) 213, 266, 671, 936, 956, 1041, 1206
TscAI CASTG 3 cut(s) 1351, 1639, 2131
TseI GCWGC 1 cut(s) 1798
TspDTI ATGAA 7 cut(s) 28, 144, 646, 885, 1330, 1361, 1432
TspGWI ACGGA 6 cut(s) 24, 650, 1114, 1249, 1638, 2135
TspRI CASTG 3 cut(s) 1351, 1639, 2131
Van91I CCANNNNNTGG 2 cut(s) 334, 632
XapI RAATTY 7 cut(s) 408, 702, 1124, 1151, 1368, 1641, 1849
XbaI TCTAGA 1 cut(s) 169
XceI RCATGY 4 cut(s) 87, 152, 1032, 1844
XmnI GAANNNNTTC 7 cut(s) 202, 857, 992, 1124, 1189, 1762, 2072
XspI CTAG 4 cut(s) 80, 170, 1334, 1674
ZraI GACGTC 1 cut(s) 1069
ZrmI AGTACT 1 cut(s) 1055
Zsp2I ATGCAT 3 cut(s) 1030, 1165, 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.