Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013879

Physical Location & Seq

Genomic Coordinates Forward (+)

35893302 .. 35894040

Gene Structure 739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47281.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGATGAAGTTGACAATGATTGCTCGTGTTACTGATGGTCTTTTACTGGCAGAAGGACTGGATAATATAAAAGACTCGCATGTATTCTATAAACAAGCCAAGGATCTATTCAATAACTTGTCAAGAGGCCAAAACAAGCCTTCAAGGATGTCACTTGAAACCGGACCTAATACTTTTCATTACATAATCGAAGGTCGTGTCTGTTACTTGACAATGTGTAACAGTGCATATCCAAGCAAATTTGCCTTTCGGTATCTGGAAGAGCTCAAGAACGAATTCGAGCGTCTTAATGGAGACGGAATCCACACGGCTGCAAGACCATACGCTTTCCTTAACTTCGATAAATTCATACAGAAGACCAAGAAGTTGTATCAGGACACTCGTACGCTACACAACATTTCAATGTTGAATGATGAAGTCTCTGAAGTCTACCAAACAATGAAAAGAAATGTTCTACAAGTTCTAGTCGTCGGTGATAACATGGACAAGCTCAGTGAAAAAACCAATTGCTTGGTATCAGAAACTCGTGCATATGCCAAGAAAGGGAGAGACTTGAATCGACAGGCTCTGCTTCGTGAATGGGCTCCTGCTGCTGTCATTGTTCTTGGAGTAGTTTTCCTCCTTTTCTGGCTCCAAACGAAGATTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

218

Amino Acids

25.08

Weight (kDa)

9.25

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	34 - 116	7.5e-21	Regulated-SNARE-like domain
Synaptobrevin	PF00957	134 - 210	3.3e-14	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52270 AT5G52270
fragaria_vesca	FvH4_6g47281
malus_domestica	MD01G1200300.v1.1 MD07G1268100.v1.1
prunus_persica	Prupe.2G293800_v2.0.a1
pyrus_communis	pycom07g24570
rosa_chinensis	RchiOBHm_Chr1g0333651 RchiOBHm_Chr5g0053861
rosa_roxburghii	Rroxscaffold_4G00317350
rosa_rugosa	Rorug02G0522400 Rorug06G0275000 Rorug07G0304600
rosa_samantha	Rh4AG111000 Rh6DG154600 Rh7AG307300 Rh7CG326300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	242, 278, 347
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	6 cut(s)	115, 147, 161, 405, 412, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	2 cut(s)	268, 493
AluI	AGCT	2 cut(s)	268, 493
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	3 cut(s)	291, 427, 546
AlwI	GGATC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	571
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	314, 593
ApoI	RAATTY	3 cut(s)	242, 278, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	167
BanII	GRGCYC	2 cut(s)	270, 589
BauI	CACGAG	2 cut(s)	27, 528
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	301, 580
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	291, 427, 546
BfaI	CTAG	1 cut(s)	467
BisI	GCNGC	2 cut(s)	315, 594
BlsI	GCNGC	2 cut(s)	316, 595
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	588, 635
BpiI	GAAGAC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	2 cut(s)	54, 66
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	508
BseNI	ACTGG	2 cut(s)	54, 66
BseXI	GCAGC	2 cut(s)	301, 580
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	165
BsiWI	CGTACG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	3 cut(s)	291, 427, 546
BsmBI	CGTCTC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	270, 589
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	588, 635
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	54, 66
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	106
BssSI	CACGAG	2 cut(s)	27, 528
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	2 cut(s)	27, 528
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	3 cut(s)	291, 427, 546
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	301, 580
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	232, 502
CaiI	CAGNNNCTG	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	2 cut(s)	83, 484
CviJI	RGCY	9 cut(s)	101, 132, 142, 268, 314, 493, 569, 587, 634
CviKI_1	RGCY	9 cut(s)	101, 132, 142, 268, 314, 493, 569, 587, 634
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	2 cut(s)	270, 589
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	270, 589
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	2 cut(s)	86, 487
FatI	CATG	2 cut(s)	82, 483
FauNDI	CATATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	315, 594
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	2 cut(s)	270, 589
Fsp4HI	GCNGC	2 cut(s)	315, 594
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	2 cut(s)	315, 594
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	86, 487
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	3 cut(s)	77, 303, 559
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	15, 433
Hpy188I	TCNGA	2 cut(s)	427, 523
Hpy188III	TCNNGA	5 cut(s)	126, 260, 271, 377, 578
Hpy8I	GTNNAC	2 cut(s)	15, 433
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	50, 153, 188
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	230, 317, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	86, 487
Kzo9I	GATC	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	592, 639
LpnPI	CCDG	8 cut(s)	35, 47, 178, 245, 362, 551, 603, 616
Lsp1109I	GCAGC	2 cut(s)	301, 580
MaeI	CTAG	1 cut(s)	467
MaeIII	GTNAC	4 cut(s)	31, 153, 206, 221
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	275, 370
MfeI	CAATTG	1 cut(s)	508
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	270, 589
MluCI	AATT	4 cut(s)	242, 278, 347, 508
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	2 cut(s)	122, 632
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	291, 336
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	86, 487
NlaIV	GGNNCC	2 cut(s)	588, 635
NmuCI	GTSAC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	303, 559
Pfl23II	CGTACG	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	316, 595
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	270
PspLI	CGTACG	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	588, 635
PspPI	GGNCC	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	291, 336
SatI	GCNGC	2 cut(s)	315, 594
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	270, 589
SetI	ASST	4 cut(s)	172, 199, 270, 495
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	242, 278, 347, 508
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	4 cut(s)	192, 282, 342, 562
TasI	AATT	4 cut(s)	242, 278, 347, 508
TfiI	GAWTC	2 cut(s)	303, 559
Tru1I	TTAA	2 cut(s)	291, 336
Tru9I	TTAA	2 cut(s)	291, 336
TscAI	CASTG	2 cut(s)	232, 502
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	2 cut(s)	314, 593
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	5 cut(s)	23, 170, 340, 432, 458
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	232, 502
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	3 cut(s)	242, 278, 347
XceI	RCATGY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.