Rh7AG307300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013879
Physical Location & Seq
Forward (+)
34332149 .. 34359834
27686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG307300.1

Sequence Viewer

Length: 327 bp
ATGAAACATTCTCAGAATCTCTCCAGATATGTACAACATTCTAGTAGTTTATTACAAGGCTCACATACAATTAAGACAAAAGGAACAGATTCTTTGTTGGTCTTTAATTACTTGCAGATTACAAATAACATGCTTTGTTGGTCAGTAGCACATTTCAGTACCCATTTCACTTTCCTGATCGACACGAATGAAGAAGAAACTCAAATTTTCAATGGTTGCAAATTTCAGAGGCCTACTGGAGCCATACCTTCTTCAAAGCAGGTATTCCAACTCATATATGTTGGAATTCTCACAATACACCCTGGTCCACAGAGCAGCACCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.2

Weight (kDa)

9.06

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AcsI RAATTY 3 cut(s) 204, 221, 285
AfaI GTAC 2 cut(s) 33, 160
AgsI TTSAA 2 cut(s) 211, 255
AjnI CCWGG 1 cut(s) 301
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 3 cut(s) 204, 221, 285
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 303
BfaI CTAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 303
BpmI CTGGAG 2 cut(s) 7, 258
BsaJI CCNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 241
BshFI GGCC 1 cut(s) 232
BsnI GGCC 1 cut(s) 232
Bsp1407I TGTACA 1 cut(s) 31
Bsp143I GATC 1 cut(s) 177
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 31
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 301
BsuRI GGCC 1 cut(s) 232
BveI ACCTGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 32, 159
CviAII CATG 1 cut(s) 130
CviJI RGCY 3 cut(s) 60, 232, 242
CviKI_1 RGCY 3 cut(s) 60, 232, 242
CviQI GTAC 2 cut(s) 32, 159
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 133
FaiI YATR 7 cut(s) 30, 66, 131, 245, 275, 277, 279
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 316
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 316
GsuI CTGGAG 2 cut(s) 7, 258
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 1 cut(s) 133
HinfI GANTC 2 cut(s) 16, 89
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 2 cut(s) 15, 228
Hpy188III TCNNGA 2 cut(s) 24, 175
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 115, 219
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 6 cut(s) 37, 188, 222, 245, 288, 315
MaeI CTAG 1 cut(s) 42
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 3 cut(s) 203, 206, 243
MluCI AATT 5 cut(s) 69, 106, 204, 221, 285
MmeI TCCRAC 2 cut(s) 262, 292
MnlI CCTC 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 88
MseI TTAA 2 cut(s) 72, 105
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 241
NspI RCATGY 1 cut(s) 133
PceI AGGCCT 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 16, 89
PkrI GCNGC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 305
RsaI GTAC 2 cut(s) 33, 160
RsaNI GTAC 2 cut(s) 32, 159
SaqAI TTAA 2 cut(s) 72, 105
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 303
SetI ASST 2 cut(s) 250, 264
SinI GGWCC 1 cut(s) 305
Sse9I AATT 5 cut(s) 69, 106, 204, 221, 285
SseBI AGGCCT 1 cut(s) 232
SspMI CTAG 1 cut(s) 42
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 301
TaqI TCGA 1 cut(s) 180
TasI AATT 5 cut(s) 69, 106, 204, 221, 285
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 2 cut(s) 16, 89
Tru1I TTAA 2 cut(s) 72, 105
Tru9I TTAA 2 cut(s) 72, 105
TseI GCWGC 1 cut(s) 315
TspDTI ATGAA 2 cut(s) 17, 204
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 3 cut(s) 204, 221, 285
XceI RCATGY 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.